LOC110509077


Basic Information

Item Value
gene id LOC110509077
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34811894 ~ 34814719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471398.2
GAATGGGGACTTTTAATTTGAAAACGTGCAGGATACCTCTTTCCGGTTTCCCTGACTTCTGTTTTTTTAATACTGTGTTATTCTTGTTTGGGTAGCACCCCTCACAGGCCGTTTGGTGTACGTTTTTTTTTTGATGCTATCAGGATCCATAGTGGAGAGACGCAGCGCAGCTTCTCTCCAACAGCACCATGGGGAGGCGTGCTGGGCATCGACATAATACATATTTTGGGCCTGTGACTTTCGCAAAGTGGGCGCTGCTTATCAAGGGGCGACATCAGCGCTCTGCTTAATAGCTCATATGCAACTGGGTAAATATGAACCAGGAAATGAGAAATCAAAGGCCAGACTGTAGCAAACACCACGGTGGTAGGAGACAGGTGCAAAGGCCACCACGAAGGACTCTGGAAAACCAAAAAAAGACAACTCTCTCAACCATGCTGATATTAAAGAGTAAATCTCTTGTTAAAGAGACTTCTCTTGTTTAGCATTGCACATGTTTAAACGACTCCTCTTTCGTGTATACGTTTTAAGATAttcaatgaaaaaaaaaacgGTATGATTCTGGCATTGTGAAtcctattttttttactattattTAATAGTTAGACAGAAGATTGAAAACCTTacatagacttgtttctactgtattattgactgtatgtttgttttactccatgtgtaactctgtgttgttgtatgtgagtcgaactgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctc
>XR_002471397.2
AATGGGGACTTTTAATTTGAAAACGTGCAGGATACCTCTTTCCGGTTTCCCTGACTTCTGTTTTTTTAATACTGTGTTATTCTTGTTTGGGTAGCACCCCTCACAGGCCGTTTGGTGTACGTTTTTTTTTTGATGGTATATTCAACCTTTTGGCAGCTATCAGGATCCATAGTGGAGAGACGCAGCGCAGCTTCTCTCCAACAGCACCATGGGGAGGCGTGCTGGGCATCGACATAATACATATTTTGGGCCTGTGACTTTCGCAAAGTGGGCGCTGCTTATCAAGGGGCGACATCAGCGCTCTGCTTAATAGCTCATATGCAACTGGGTAAATATGAACCAGGAAATGAGAAATCAAAGGCCAGACTGTAGCAAACACCACGGTGGTAGGAGACAGGTGCAAAGGCCACCACGAAGGACTCTGGAAAACCAAAAAAAGACAACTCTCTCAACCATGCTGATATTAAAGAGTAAATCTCTTGTTAAAGAGACTTCTCTTGTTTAGCATTGCACATGTTTAAACGACTCCTCTTTCGTGTATACGTTTTAAGATAttcaatgaaaaaaaaaacgGTATGATTCTGGCATTGTGAAtcctattttttttactattattTAATAGTTAGACAGAAGATTGAAAACCTTacatagacttgtttctactgtattattgactgtatgtttgttttactccatgtgtaactctgtgttgttgtatgtgagtcgaactgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctc
>TU2437177
TTGTTTGGGTAGCACCCCTCACAGGCCGTTTGGTGTACGTTTTTTTTTTGATGCTATCAGGATCCATAGTGGAGAGACGCAGCGCAGCTTCTCTCCAACAGCACCATGGGGAGGCGTGCTGGGCATCGACATAATACATATTTTGGGCCTGTGACTTTCGCAAAGTGGGCGCTGCTTATCAAGGGGCGACATCAGCGCTCTGCTTAATAGCTCATATGCAACTGGGTAAATATGAACCAGGAAATGAGAAATCAAAGGCCAGACTGTAGCAAACACCACGGTGGTAGGAGACAGGTGCAAAGGCCACCACGAAGGACTCTGGAAAACCAAAAAAAGACAACTCTCTCAACCATGCTGATATTAAAGAGTAAATCTCTTGTTAAAGAGACTTCTCTTGTTTAGCATTGCACATGTTTAAACGACTCCTCTTTCGTGTATACGTTTTAAGATAttcaatgaaaaaaaaaacgGTATGATTCTGGCATTGTGAAtcctattttttttactattattTAATAGTTAGACAGAAGATTGAAAACCTTacatagacttgtttctactgtattattgactgtatgtttgttttactccatgtgtaactctgtgttgttgtatgtgagtcgaactgctttgctttatcttggcca
>TU2437178
TTGTTTGGGTAGCACCCCTCACAGGCCGTTTGGTGTACGTTTTTTTTTTGATGGTATATTCAACCTTTTGGCAGCTATCAGGATCCATAGTGGAGAGACGCAGCGCAGCTTCTCTCCAACAGCACCATGGGGAGGCGTGCTGGGCATCGACATAATACATATTTTGGGCCTGTGACTTTCGCAAAGTGGGCGCTGCTTATCAAGGGGCGACATCAGCGCTCTGCTTAATAGCTCATATGCAACTGGGTAAATATGAACCAGGAAATGAGAAATCAAAGGCCAGACTGTAGCAAACACCACGGTGGTAGGAGACAGGTGCAAAGGCCACCACGAAGGACTCTGGAAAACCAAAAAAAGACAACTCTCTCAACCATGCTGATATTAAAGAGTAAATCTCTTGTTAAAGAGACTTCTCTTGTTTAGCATTGCACATGTTTAAACGACTCCTCTTTCGTGTATACGTTTTAAGATAttcaatgaaaaaaaaaacgGTATGATTCTGGCATTGTGAAtcctattttttttactattattTAATAGTTAGACAGAAGATTGAAAACCTTacatagacttgtttctactgtattattgactgtatgtttgttttactccatgtgtaactctgtgttgttgtatgtgagtcgaactgctttgctttatcttggcca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471398.2 False 760 mRNA 0.41 3 34811894 34814719
XR_002471397.2 False 780 mRNA 0.41 3 34811895 34814719
TU2437177 False 647 lncRNA 0.41 3 34811977 34814689
TU2437178 True 668 lncRNA 0.41 3 34811977 34814689

Neighbor

gene id symbol gene type direction distance location
LOC110509069 NA coding upstream 8309 34796732 ~ 34803585 (+)
LOC110509070 LOC106598580 coding upstream 42566 34766774 ~ 34769328 (+)
LOC110509067 grk7 coding upstream 111663 34692295 ~ 34700231 (+)
LOC110508234 NA coding upstream 157545 34653129 ~ 34654349 (+)
fbxo36b LOC106598179 coding upstream 159372 34648851 ~ 34652522 (+)
LOC110509073 LOC106568697 coding downstream 10250 34824969 ~ 34867323 (+)
si:ch211-252f13.5 LOC106598121 coding downstream 83808 34898527 ~ 34903418 (+)
LOC110509083 LOC106598110 coding downstream 121807 34936526 ~ 34939328 (+)
LOC110509084 rab18 coding downstream 264779 35079498 ~ 35088111 (+)
trnak-uuu-132 NA coding downstream 318069 35132788 ~ 35132860 (+)
G2131472 LOC106598156 non-coding upstream 25578 34785005 ~ 34786316 (+)
G2131462 NA non-coding upstream 37758 34770922 ~ 34774136 (+)
G2131387 NA non-coding upstream 62806 34742654 ~ 34749088 (+)
G2131427 NA non-coding upstream 72705 34735325 ~ 34739189 (+)
G2131435 NA non-coding upstream 87681 34723922 ~ 34724213 (+)
G2131510 NA non-coding downstream 30579 34845298 ~ 34846409 (+)
G2131536 NA non-coding downstream 89076 34903795 ~ 34904100 (+)
G2131538 NA non-coding downstream 96391 34911110 ~ 34912582 (+)
G2131540 NA non-coding downstream 98717 34913436 ~ 34945186 (+)
G2131551 NA non-coding downstream 119685 34934404 ~ 35018056 (+)
G2131426 NA other upstream 28476 34702206 ~ 34783418 (+)
G2131416 NA other upstream 124254 34687271 ~ 34687640 (+)
G2131383 NA other upstream 206941 34603485 ~ 34604953 (+)
LOC110508236 LOC106598267 other upstream 437884 34352592 ~ 34409491 (+)
G2130749 LOC106598333 other upstream 742800 34038792 ~ 34069094 (+)
G2131933 NA other downstream 276980 35091699 ~ 35093034 (+)
G2132291 NA other downstream 885127 35699846 ~ 35700235 (+)
LOC110508289 LOC106597230 other downstream 1158720 35973386 ~ 35975132 (+)
G2132519 LOC100380659 other downstream 1524375 36339094 ~ 36364994 (+)
G2132611 LOC100380659 other downstream 1550837 36365556 ~ 36369967 (+)

Expression


Co-expression Network