LOC110508238 (LOC106598127)


Basic Information

Item Value
gene id LOC110508238
gene name LOC106598127
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34868513 ~ 34888930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966925.1
CCCACTGATCAGACAAGTGTCAGTATTCATACCAGTTCCAGATCAACCCCACGTGTGCAAGGTGCACATGTACTTTAAGACACAAGAACTACAGATACAATATCTACCGTTGACTCTATGACTGGAGAGTAACCCGGGAGATCGTTCAACTCCAAAGATGGAGGACATAGACGCCATGTTCACTGACCTGCTGGGAGAGATGGACCTCCTAACACAGAGTCTTGGGTATGAAACGGACTCCTCAGAAATATCATCCAGCAGTTCACAGATAGAAAACAACTTCTCTATTGGGTTCACAGATTTGAAAGAATCTCTAAATGAGCTAGAGGATCACGACCTTGACGCTCTGATGGCTGATCTGGGGTCAGATTTgacggagacagaggagacactgAATGCAGCCAAGACGGGACATGTCCACACACAACAGCACAAGTCTGGCCTCTACACCCCGCAACAAAATGTCCAAGCAcctatcccctcctcctcctcctctctccctcctgaacCCTCTGAACCACTGCTAGCGGGAGAGGCTGAAGCACAAGCCAAAGCCGACAAAATCAAGCTGGCTCTGGAGAAGCTAAAAGAAGCCAAAGTTAAGAAGTTGGTGGTCAAGGTGATGATGAGCGATGGCAGCTCCAAGACACTGATGGTGGACGAGAGACAGACGGTGAGGGACGTGCTGGATAATCTGTTTGAGAAGACCCACTGCGACTGCAGCATGGACTGGAGCCTATGTGAGACCAACCCTGAGCTGCAGGCTGAAAGGGGGTTTGAAGACCATGAATATCTGGTGGAGTCTCTTTCTGCATGGACACGAGACAGTGAAAACAAAATCCTTTTCCTTCTGAGACCCAACAAATATCTCCTCTTCAAAGACCCCCAGATATTCTACCTATGGAAGAAACATAAACAATTTATGAATGAGATAAAAGAATGCCATAAGGAACTTCTGCTAAAGGAACATTTTGAGGGTCCGTCTGTCATCGTCCCAGACCTGGAGGGGCCGCTGTATCTGAGGGAGGACAGGAAGAAATCGTGGAAACGTCGCTACTTCCTGCTCAGAGCTTCTGGGATATACTACGTGCCTAAAGGAAAGACAAAGACATCCAGGGACCTGGCGTGCTTCATTCAGTTTGACAAAGTCAACATCTACACCACCACTGATTACAAACAGAAGTACAAAGCACCCACTAACTTCTGCTTCATCCTCAAGCATCCTCAGATCCAGAAGGAGTCCCAGTACATCAGGTTCCTGTGTTGTGACGATGagcacactctctccctctgggtCAACTCCATCAGAGTAGCCAAGTATGGGGCCACCCTGTATCACAACTATCAGAAGGCAGTGAGGAGAGCCTTAACCACCACCTCCACTCTGCATGTGACCAGTCTGCCTGTCTCCAGCCCTCCCACACATTCTACTGGGCACatagCAACAGTGAGGGCCAATGGACATCCTGATCAGGACGACTTCTCTGAACCGCCCCCAGACTTTATTCCCCCGCCCCCTCCTGGGTGGAGCTCTGGGGTCTAGGGATGGAGCTCCGCCCACTCACCCATGACTTCTGTAGAGGACGTtctcaacctacctacctacagacAGACAAGCCCAGTGTTCATGAACCAGAGCGATGCTTTTAAAAAATAGCATCTCGGGAGGTGACAGGCCCTGCTCCAATAATTCAAAATGCATTCTTCCTTTCTTCCCTCCTTCTTTAAGTAACTGATCTGACAAGATATGATTGGACAACGCAATGCAGTGGAGACATTTCCAAACCAGTGACTGatgggaaaggggggatacctagtcagttgaatagggaaaggggggatacctagtcagttgaatagggaaaggggggatacctagtcagttgtatagggaa

Function

NR:

description
PREDICTED: amyloid beta A4 precursor protein-binding family B member 1-interacting protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966925.1 True 1895 mRNA 0.49 13 34868513 34888930

Neighbor

gene id symbol gene type direction distance location
LOC110509075 LOC106598143 coding downstream 43978 34812717 ~ 34824535 (-)
LOC110509071 LOC106598156 coding downstream 61699 34773755 ~ 34806814 (-)
gk5 gk5 coding downstream 107090 34737462 ~ 34761423 (-)
LOC110509072 atp1b3 coding downstream 140316 34713267 ~ 34728197 (-)
LOC110508232 NA coding downstream 264381 34572033 ~ 34604132 (-)
anxa13l anxa13 coding upstream 22165 34911095 ~ 34921612 (-)
LOC110509081 LOC106598107 coding upstream 36456 34925386 ~ 35056378 (-)
LOC110509086 LOC106598057 coding upstream 203292 35092222 ~ 35105019 (-)
trnaw-cca-62 NA coding upstream 243625 35132555 ~ 35132626 (-)
trnaw-cca-63 NA coding upstream 244933 35133863 ~ 35133934 (-)
G2131816 NA non-coding downstream 1270 34866665 ~ 34867243 (-)
G2131809 NA non-coding downstream 13976 34853560 ~ 34854537 (-)
G2131736 NA non-coding downstream 183245 34684981 ~ 34685268 (-)
G2131735 NA non-coding downstream 186031 34682278 ~ 34682482 (-)
G2131702 NA non-coding downstream 248589 34619644 ~ 34619924 (-)
G2131836 NA non-coding upstream 2955 34891885 ~ 34892090 (-)
G2131851 LOC106598110 non-coding upstream 47578 34936508 ~ 34945229 (-)
G2131873 NA non-coding upstream 88375 34977305 ~ 34977703 (-)
G2131880 NA non-coding upstream 102080 34991010 ~ 34991812 (-)
G2131641 NA other downstream 350384 34516522 ~ 34518129 (-)
G2131621 NA other downstream 382337 34485869 ~ 34486176 (-)
G2130780 LOC106598333 other downstream 800440 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 801848 34040206 ~ 34066665 (-)
lyrm4 lyrm4 other upstream 1116559 36005489 ~ 36017873 (-)
LOC118944844 riok1 other upstream 1134850 36023714 ~ 36025735 (-)
G2132971 NA other upstream 1335283 36224213 ~ 36225379 (-)
G2132966 NA other upstream 1346585 36235515 ~ 36249775 (-)
G2133007 NA other upstream 1374072 36263002 ~ 36263330 (-)

Expression


Co-expression Network