si:ch211-252f13.5 (LOC106598121)


Basic Information

Item Value
gene id si:ch211-252f13.5
gene name LOC106598121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34898527 ~ 34903418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590036.2
ATCTTCAGATCGGCTGGAAGGATCAGTACATACCATATccactcagggagagagaggctggcagTTCATTCATTTGAAAAGGTTCCACTCACTCCAAAAGGCTACATTAATTGAGAAGGTGTGGATGATCTGAAAGCAGTCTTTCCTTCGTGGGGAAACGCTACGATTTAAAACGCGAAGTGAACCAGGCAGCTTATTCCCCTGGATTCCGGAATGCGTAAAAGCACCTGATGGGATGCGCAATAAAATAGGCACAATTCTACGTTGGCTAAATAACTCTTCTTCTACATCGTGGATAATATGAAAATGACTATCATAACTCCATTGTTTCTGCTCTGCTTGACATTGTTGGTCGGCACAACCGAGAGTGTGGCAGAGATATGCAGGGGGACGCACTGTTTCAGCTCAGAGGACTGGACCAGACCTTGTACAGGGGCGCATTGCCAGCGGCGAACGGACGCAGCACCCCAACACTTAAACCCCGTAATGCAAGACAGGCAGGCGTTTGTTAAGCCCCTTTACCAGGATGCCCATACTAAACATCAGACCAGAAGTGCACAGGTACCATACACTGTCATCCAACCACATCGTGGTGGCACGGCCACAAGCGACACGCAGAAAGAAAACCCAAGATCCATTACCGCGGAGGTGTACCACCCCGGGTGCAAAGGAGGGAATTGTCAAGCTTCCCAGCCGCGACCAACGAGAACTGAGAGTGTCCCCCGGGAATGCAAAGGGATTGAATGTAAACTGCCACTCAGGATGCGACCCAAGCCGAAGCCTCAACCGTGCATTGGCGACAGCTGTGTCACTGGTGGTGGCGAAGACCCGAGAGGGCAGCAGCCCCCCCTGGTTCATGACAGAGCGGCGCAATTTCTTGGAGAATTTCCGGAGTTTGGATCAGAACGTGGTTCATCGCCTCTTGGAATACAGTTGACATGCGACATCAAACCAGGCAACAATGAGGTGCCCTCGGAGGACACCCTGGTGCTGCAGCTGCGTCTGGCCAAGGGCCAGGAGAAGCTGGTGGAGGCACTGAAGGGCCAGCAGGAAGAGATCAGGGAGCTGCAGAGCAGACTGAGCCAACAGCAGGGGACGCTGGTCAGCCAGCAGAGAGAGATcctggaggagcagagcagaCTGAGCCAACAGATGGACCAGGTCAAGGCCCAGTATGGCCTACTCCTAGAGAATGTCAAGCAGATGTCCTTCCAGGGCATGCAGGAGGAGCTAGAGAGCCACATGGTGGCCCTCAGAGGCCAGGCCAGGGCCCATCACACCCAGGCCTACGCTGTGCACAAGGTGGACATGGAGGCCAGAGTGATGGATGTAGACCTCCCCGTGTTGGCCTGCAGGTCCTGTGGAGCGGAGGAGTACTGCGACTTCAGGACAGGTCGGCCGCAATGTGAGAGGTGCACCATCTGTCCAGCGGGCTTCTTCCTGGTGTCCCAGTGCTCCATCCATGCTGACAGGATATGCCAGgACAGAGATGAATGCCTTGAAGTAGCAAACCTGTGTTCAGAACAGAAGAAATGTCTAAACACGCCAGGTGGATTCAGGTGCCAGGGCTTGTCTGACAGAGAGGCCAGCACAGGCTTGTGTGGACATGCCTACTTCTACAACTCGGAGATGGAGGAGTGTCAGGCCTGTCAGGAGTGTGAGGTGGAGCAAGTGGCCACACCCTGCACTTTCACGAGTGACACCATCtgctccaccccctcctccactgACAGCAGCAGACTGTCCCTGTCCTGGGCTGGGGTTGTGACCCTGCCTCCTACCAAGAGCCACGCCCCTGGTCACGCCTTCCCCAACCTGCAGCTCCACATCCATGGGCGGGGCGACAGCAATCTGCTGGCCACCGAAGACGGCCATCTGGTGCTGCGACAGCACGGCCTTGTTTGGGCAGACGAGAACTTGGCCCTGAGCCATGGATGCCGCAGTTTCGTCCAGGTGTGTCTGCAGCTTAACACCAGTGACCTGACCGAGGGGCGGGACCTTAGTGGGGTCAGGGTGGAGCAGCGGGAAGTTAAGTCGCTCCAGAGTGCCAGTGTCAGTGGGGTGGCAGAAGTTGCTCCAGGAAGTATGCTCTCCCTGCTCCTCAGGAGTGCCAGCCACCATTGCAACCACACAAGCGATGGCCTGCACCTCCATGACCCATCTGTGGCCCCTCTCAGTCTCTTCTGGCTGTCCCACGATACCGGTGCCGTCGCCATGACTGCGCAGGCAGTGTCATCGGCGCACTACCACACCAACTACCGGCCCGCCTTCAAGACCACGTCCACCTCTGACCCGTACGTTGTGGGGCTGACTCATGATGGGCGTGGAGTGCGCTTCACCGAAAGTGGCACAGTGCGCTTTGTGTTCCAACAGGCACTCTACTCCATGGGCCAGGCGTGCGTGACGGAAGGCTTTCACCTGCTGGCCTACCTCAACCACAATGGTAGCAGCATGGAGCTGGCTCGAACATATAAGACTGGTGTCCACTATCGCGACACGTCCATCTCCCTGTCGGCTGCTACCATGGTCGGCCCCGGCGATACTCTGGGCTTTGAGATCCTCTCCCCGGGGCAGTGCAACATTCGCTACTTCGGTGACGACTCCGGCATCAGTGCCCTCAGTTTGGTGTGGATCCCCACTGCCATCTCCTCCGCCCTCTCCGCCTCCCTGGCACGCACAGGCTTGCCCTCCGGAGCGGTGCGCAACAAGCCCTTGTATTTCCGCCAGGTGAGCCCCCACATGCCGCAGATGCAGGTCGGGCTTCCAGGGAAGGGTCGCGCTGAACAAGGACGTGAGTTTGTCTTCACGGAGAGCGGGACAGCCAGCTTTGCACTGGACCTGAAGCTGATCCACTCCTGCAACCCGGTTAAAATCACCCTGCTCCGACATAGAGGCGAGGGGGCAGGGGAGGAGGGCAAGCCAGTGCCCCTGGCCCAGCAATTCGGGGGCCAGATGCCAGAGGGCAGTGGGTGGGCAAGTGTGGGGCTGCGGGCCTCCTTCCAGGTCCACAATGGCACGGCGGTTTTTGTCACATTGGACTGCGTGCGAGGACGCATCAATCAGATCAGTCATCAGGCGGGGAGCGGCGTCTCCATACTgtgggtggcagcgtagcctagtggttagagcgttagttcgaatccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaaggcagttaatccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggta

Function

NR:

description
uncharacterized protein LOC110509079

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590036.2 True 3266 mRNA 0.57 5 34898527 34903418

Neighbor

gene id symbol gene type direction distance location
LOC110509073 LOC106568697 coding upstream 31204 34824969 ~ 34867323 (+)
LOC110509077 NA coding upstream 83808 34811894 ~ 34814719 (+)
LOC110509069 NA coding upstream 94942 34796732 ~ 34803585 (+)
LOC110509070 LOC106598580 coding upstream 129199 34766774 ~ 34769328 (+)
LOC110509067 grk7 coding upstream 198296 34692295 ~ 34700231 (+)
LOC110509083 LOC106598110 coding downstream 33108 34936526 ~ 34939328 (+)
LOC110509084 rab18 coding downstream 176080 35079498 ~ 35088111 (+)
trnak-uuu-132 NA coding downstream 229370 35132788 ~ 35132860 (+)
trnak-uuu-133 NA coding downstream 230685 35134103 ~ 35134175 (+)
trnak-uuu-134 NA coding downstream 232244 35135662 ~ 35135734 (+)
G2131510 NA non-coding upstream 52118 34845298 ~ 34846409 (+)
G2131461 NA non-coding upstream 56305 34769657 ~ 34842222 (+)
G2131472 LOC106598156 non-coding upstream 112211 34785005 ~ 34786316 (+)
G2131462 NA non-coding upstream 124391 34770922 ~ 34774136 (+)
G2131536 NA non-coding downstream 377 34903795 ~ 34904100 (+)
G2131538 NA non-coding downstream 7692 34911110 ~ 34912582 (+)
G2131540 NA non-coding downstream 10018 34913436 ~ 34945186 (+)
G2131551 NA non-coding downstream 30986 34934404 ~ 35018056 (+)
G2131587 NA non-coding downstream 92920 34996338 ~ 35033590 (+)
G2131426 NA other upstream 115109 34702206 ~ 34783418 (+)
G2131416 NA other upstream 210887 34687271 ~ 34687640 (+)
G2131383 NA other upstream 293574 34603485 ~ 34604953 (+)
LOC110508236 LOC106598267 other upstream 524517 34352592 ~ 34409491 (+)
G2130749 LOC106598333 other upstream 829433 34038792 ~ 34069094 (+)
G2131933 NA other downstream 188281 35091699 ~ 35093034 (+)
G2132291 NA other downstream 796428 35699846 ~ 35700235 (+)
LOC110508289 LOC106597230 other downstream 1070021 35973386 ~ 35975132 (+)
G2132519 LOC100380659 other downstream 1435676 36339094 ~ 36364994 (+)
G2132611 LOC100380659 other downstream 1462138 36365556 ~ 36369967 (+)

Expression


Co-expression Network