LOC110509081 (LOC106598107)


Basic Information

Item Value
gene id LOC110509081
gene name LOC106598107
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34925386 ~ 35056378 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966584.1
acgaaGCCAAAGACACCTCAGGTGCCCTATGCGATATTGGGAGGGATGGGAATTTGAAAGCAATTTGCTCCAGCCTCCCCTCTGTTTTCACTCTAATTCTACAGCCTGCACTAGGAGGATTGAAACTGGCGGCTTGAGTGTTAACTCACCCATGTAAAGCGACCACCGGAGCTCACCGCTGCAATAACTAAGCCTGTCTTGGCAGTAAGAGGATTGGTTGACTGTAAAAACATCTGCCTGACGCTTGGTTGCAGAGCGTAAACGGGTGTTGAGGAAGCGTCTCTCTATCACGGACGAGCATGTGAGCAAGTAGCCTACAGCTTTTGATAGTATCGTTTAATGGCACTTTACGCTATTGAATTGGGATGATACTAATTCATCTCCTAGTAGGTGTCCATTAGCCTATCAAATTTAGTCACTGCGCGCAAGTGGTTGGTTTCTGTTATGCTCAATGGAGAGCAAACGGATTCTTCACTCTGTCGGTAAAAGCAGTCACGGTATGGCTTTTTTTCTTATTCATCTGCTTCTGCAAATGGGATTCGTTTTCGGATCTAATTATGGGTATGTGGAATGGTCGGATAACGACAAAGACGCTGAAATACGATCGAAGAACCCCACTATGTACAGCACTCAAAATATCAACAAGGAATCGATGCACCATCCAACTTCTTACCCAGGACCCTTCACGGAGCGCACCATTGTGGCGCACAAAATCGAAGAGGACCTGCCTAGGGTGGTAACAGCTTTCCTGCACACGGGAGACTCGTCGGCTCTTGAACAAGTCAACTGTTCTCGGAGGTATGAGTTGAGTAGCCTCCGCGGTGGAACCAATGTGGCCTCACACTATTTTCTCCATAGCGTGCTGGACACCATGGCGCACGCAACCAACTTTCTGAACATGATTTTACAAGCCAACAGGTCAAGAGAGCACAGCCTTCGGAGGGATATTAACTGGTACCACGCACTGGTTCGGAGTATTCTCGAGGGGGACCCCAAAATTCACAGGGCAGTGGTTACATTCCATTCTGATGCTCCGACGCGGGGTCCCCATGTTTTCCTTCAAGCGACAAGAACTGAAGGGGAAGTGGTTCTCCAGGACCTTTCCAACTCCGCTCACCACCATCTCAAGAGCAGGAGCCCGGATTCTGAGTGGTTTAACGAGTTCAGGGACCGAAAAAAACCGTACATGCAGAGAAGGGCGTCGAGCCGAGACCCAGTAGCCACTCAAAATGGCTACATTCTCGACAAAAGTCAAATCAAGTGGTCTGCGCCTTACCTGGAATGCGAGCATGGGAATTTCGTACCACACTGGCTACTCACCTTGTCTGCGGGGTTCTATGGTCTGAAGACAAATTCCGCGCCCGAGTTCAGGGGTGTGGTTCGAGTGGACATCAACCTCCAGGATGTGGACATTGACCAGTGCTCCAGCAGTGGCTGGTTTGCTGGAACTCACCGCTGTAATCTGACCAGCATGGATTGCAATCCCATTGTCGGACATGGATTCGTGCTAGACAACTACAAGTGCCAATGCCGGAGAGGCTTCTACCATCCTAGCAGAGTGGCACTCAACGGCTTTACAAAGAGCGGTGGTCACGCTCACGGTGAGGACCCCTCGGAGGGGTCCAGTAGGTGTCTGCCATGCCATGAGGGCTGCCCCTACTGCCGGGATGACACGCCCTGCTTGGCTCAGGAGGACGGAGCCCTTCGGCTTTCCGTAGCCTCCTTCCAGGGCCTCTGTATGCTGCTGGACTTAGTGGCCATGGTGCTGGTCTACCACTTCCGCAGGAACAAGAGGATCCGAGCGTCTGGTCTCGTCCTCCTGGAGGCCATCTTGTTTGGAGCCTTGCTTCTCTACTTTCCCGTGATGATACTGTACTTCAGCCCCAGCGTGTTGCGCTGTATCCTCCTGAGATGGGTGCGTCTCCTGGGCTTTGCCACGGCCTACGGAACAGTGATACTGAAGCTTTACAGggTGCTGAAGGTGTTCCTGTCCCGTACGGCACAGCGGACGCCCTACATCACCAGCTGGCGGGTGCTGCGTCTGCTGGGGGTCATCCTGCTGGTGGTGCTGTGGTTTCTGGTGGCCTGGACCTCGGCCGTGTGTCAGACACCTGACCGGACGTCGGCCCTCATCGATGTGGGCCTCACCCCCGACGGGCTGCAGTTCAGCATGTGCCTGCTGGACCGCTGGGATTACATGATGGCAGTTGCCGAGTTCCTGTTTCTTCTGTGGGGAGTGTACCTGTGCTATGCTGTCCGGACCGTACCGTCAGCCTTCCATGAACCACGCTACATGACTGTTGCCATATACAATGAACTCCTCATATCGGCAGTATTCCACACCATTAGGTTCACTCTGGCTCCTCAGTGGCACCCTGACTGGATGCTCATGTTGGTCTTCACTCACACACAGCTCACCGTGACTGTGTCTTTGGGGCTGCTGTTTGTACCAAAGTGTCTGTCCACAGTGACCCAGGCGAGTGATGACATTGCCACTGAAACCTATGAAGAGGAGCTGGACATGGGCCGGTCCGGGTCCTACCTCAACAGCAGCATCACCTCAGCCTGGAGCGAACACAGCCTGGACCCCGAAGACATACGGGACGAGCTCAAGAAGCTTTACGCCCAACTGGAAGTCTACAAGCGCAAGAAGATGCTGGCCAACAACCCACACCTGCAGAAGAAGCGCAGCTCCAAGAAGGGCCTGGGCCGCTCTCTCATGAGGCGCCTCACTGAGATCCCGGAGACCTTGCACCGACATGGCAGCTATGGCAGCCGTGAGGAACGTGACGGTAGCGAGCACGGGAGCAACCGCAGCACCCTTCGACGGAATCCCTTCGACTCGTCCCATTCAGGTCACAAGTCCAGGGAAGACTCTTTGAAGAACAAAGTTCTGGGCCTGAATAAGTCACACAGCTACGACCACGTTTGTGACCAAGCTAAGGAAACTACCGGCGGAGAAGGCTTGGGTGGGGACAAAATGGCCACCGGCGATGGTTCCTTGCTGGGATCTCTCATTAGGAGGCAGGTTAAGAAGTCACCGGAGCCTGCCCCAAAGGTGGAACCGGCCGAGTCAGTGCCCTTGGTCTGCAAGTCGGCCAGCGCGCACAACTTCACAGCGGACAAAAAGCCCATTCAGCTGAGGACGTCCATCATGCAGAAGTCACTGAGTGTCATCACCAGTGCCAAAGAGAAGATGCCCGGGCTCACCAGCAAGACCCATAGCGCAGAGGATGCCAGCAAGAAGGGACTCAAGGGTCGCGATGGGAGGATGCTGTCTGAGGTGGACGAGATGGAGTGTTATCCTAAGATGATCATCAGCCAGTCGGTAGAGTACTCCAGGACACCCATGGCCAAGATGGGCATCATGAAGCAGCAGGTGAGTGGCAGCCAGCCGTCCATCAATACAGAGCCGGGGAGAAACCTGTATGACCTCTCCGAGGTGTGCTCTTGGGATGTGGAGGACCCCCCAACCCCGTCGGATGGAAGGTCCCAGAAGCATGTGTCCATTGCTCCGGGAGAGACTACCACGGTCcacaggggtgatggtggtggtggcacgGGTACCACCAAGGGCAGTCGCTCCCAACAGAAGCAGCAGAGAACCGCAGGGCAATCGCCTGCAGGCCGACAGCGCTCCAAAGACAAGGGGTGTGAACGAGACGAGGCCAAAGAAACAAGGAAGCCCAGGTCTCCCAGATCTCCACTCCTGCTCAAACCGGAGGTGTGCCCCTGGGCCTTTGAGGTGCAGCCAATGTTGGGAGGCGATTCAGACTCCATCTCTCCAGAGAGGATCAGACGTAAGAGGAGCGTCACACCAACTGATGGGAAGCCCAAGATCCTCCACTCAGACTACTCCAAATCCACAGGGAGTCTGCTGCAGCCGCCCACCCTGATGTTGGACATCTGTCCCTGGGACTACAATGAAGCCCCAGCCTCGCCTTCCCCCAGCCAGGAGAAGACCTGCTCCAGTCCCACGGCTCACTCCAAGCGGAAACGAAAAGGTTCGTGCTCCTCcaaagaaaggggagagaggggtgagagagagaaaggagggagggacaaggaggaggagaagcagcaCAGGTCAAAGAACAAGGAGAGCTCCTCCAGCAGGCCCTCGGAAAGACCACGTGTCAGCCAATCATCAGAGGGTGTTCCGGTCACCGTGCCAACATCTGGGAGACGGAGGAGCTCAACGAGAAACCCGGAGGCGTCGGAGAACAAGAGGGTAGAGGTGTGCCCGTGGGAGGTAGAAGACGCGCATGCCAGCGTAGCACAGACAAAGCCTTCTCCAGCGAAAGAGAACTCTTTGAGTTCTCATAACAAACAACCCGTTAGCACTGCTAAAAGGGTTGACGTTTGCCCCTGGGATTTTGAAGACAATGGGTCAGAGAAAAGTGCATGATAATCAAAATGATAGACAATGTGTTTTGTATTCACGACACAAATGCCTTGCAAACTGGGTTTTAAAGATAAGGGTGGGAAAAACAGTTGTACTGTGGTTATGACTAAATCATTTTGTGAAGTAAAACATGCAATACGGTCTGTTAGAGCATTCCCAACAAAAGTATTTGTTCGAATACAAAGTCCTGTTGTTAGTTGTGCAGCTTAAAGTCACTATCCGCAATGTAGAGAAATGTTTAGTCAGCACTATTTGCTTGTACATTTGCTCAGTTTGCAGTTTTGAGCCATTTGTCACACTCTTTAATACATGAAACACGTCCTTACTACCTGTGAGGGAATTTACACTGAATGAATTACAGACAACAATCTGATTTTAGACAGGTTTGTACAAGAACGTGGGACTGATTTAACCAGTCCATTTTTGTAAACAACTAATTGATGATGTTGCCACATGTTCCATTATACTGGACTGGAGTTCTCTTTTGTCTGTTTCCTGCACCTGGGTCATTCCAATATTCTAGACTGGAGTTCTCTTTTGTCTGTTTCCTGCACCTGGGTCATTCCAATATTCTAGACTGGAGTTCTCTTTTGTCTGTTTCCTGCACCTGGGTCATTCCAATATTCTAGACTGGAGTTCTCTTTTGTCTGTTTCCTGCACCTGGGTCATTCCAATATTCTAGACTGGAGTTCTCTTTTGTCTGTTTCCTGCACCTGGGTCATTCTTGTCAAGTAGTGGGCCAAGTATGAATTCAGAGTGTTGGTCATCGGGAAGTGTATAATATAACTTCCATATGAAGCACAGTGCACAGATAAGTATACTGTTAATTCTGGGGCCTTATAGATTATACAATTTGAAGTGTTGAGTAGGAGAAATAGCTACATTGGTGCACCATACATAGTTACCACTTGCGTAGCAACACGAGGATGCATCCCCTTAAGGAAGTGTATCTATTTGGTCTCCTTCCAGTCAAACATGCGTTGTGTTCGTACAAAAAAACAAACTAAAGTTTATCTTTGATGCATACATTTTGTAAAACTGCTATAGAATGTGACAGAGCACTTCCAGAAATTGCTTTGTTGTCAATTCATCAATTTACATCCAAAATGCTACAGCATTTGGTAATGGACATTTTTTGcaacagaaacaaacatttcttattggacaagttcaacTTAGTCCAtcccctgtttcagtctgtttttctCCAATTGGCTTCCTAGTGAGTAAAACCCAGCTAATCCGTAACACAGTTCttctcagtggtggaaaaagtacccaattgtcataattGAGTAAATGTAAAGATACCTTATTGGAAAATGACTcgtgtaaaagtgaaagtcacccagtaaaacactacttgagtaaaagtctaaaagtatttggttttaaatatacttaagtatcaaaagtaaaaaatataaataatttcaaattgcttatattaagcaaGCCAAACGACACAAtatcttgtttttatttatttacggatagccaggagAACACTccgacactcagacataatttacaaatgaaacatttatgtttagtgagtccaccagatcagaggaagtagggatgaccagggagattttcttgataagtgtgtgattggaccattttcctgttccTGCTAAGTATTCAAATGTAACAAGTATTTGTGGGGTTTCTGgataaatgtatggagtaaaaaaagtaaattattgtctttaggaatatagtgaagtaaaagtacaaattgtcaaaaacataaatagtaaagtatagatatccccccaaaaaatgacttaagtagtactttatgAAGTATTTGTACtttaagtacttcacaccactgatTCCGCTGTATCCATTAATGCTACAGTGACTTCTGCATGACAGTAAACATATTGGCCCAACGTCTCACTGCTCTTAGCAAACTCTGCTCCGTTATAACCTGTTTGTTGAGTGAACTTGTACCACCGTCGTCTTATCACTATAATGCTTGGTAACACTGCTGTTGCATCCCACATAGGAATATTTATATTGTACATTTATATTGTGTTCTGTTGTAATCGCATGTACATAACTCCCCCCCTTAAACCTGCAATAAATATTTATAATAAAA
>TU2437623
TTTCTGGTGGCCTGGACCTCGGCCGTGTGTCAGACACCTGACCGGACGTCGGCCCTCATCGATGTGGGCCTCACCCCCGACGGGCTGCAGTTCAGCATGTGCCTGCTGGACCGCTGGGATTACATGATGGCAGTTGCCGAGTTCCTGTTTCTTCTGTGGGGAGTGTACCTGTGCTATGCTGTCCGGACCGTACCGTCAGCCTTCCATGAACCACGCTACATGACTGTTGCCATATACAATGAACTCCTCATATCGGCAGTATTCCACACCATTAGGTAAGTAATATGGTCAacttgcacagtcttcacatttagcTGCCATAAAATGTAATCTATCAAGAGATTACATTCCCAAAAGAATCCTAACGACCTACACACCCTACTCCACATTTTTAAAGTTAAAGAAAGATTATAGAAAAATGTCCTAAAT

Function

NR:

description
probable G-protein coupled receptor 158

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966584.1 False 6515 mRNA 0.49 11 34925386 35056378
TU2437623 True 429 lncRNA 0.48 2 34956659 34967039

Neighbor

gene id symbol gene type direction distance location
anxa13l anxa13 coding downstream 3774 34911095 ~ 34921612 (-)
LOC110508238 LOC106598127 coding downstream 36456 34868513 ~ 34888930 (-)
LOC110509075 LOC106598143 coding downstream 100851 34812717 ~ 34824535 (-)
LOC110509071 LOC106598156 coding downstream 118572 34773755 ~ 34806814 (-)
gk5 gk5 coding downstream 163963 34737462 ~ 34761423 (-)
LOC110509086 LOC106598057 coding upstream 35844 35092222 ~ 35105019 (-)
trnaw-cca-62 NA coding upstream 76177 35132555 ~ 35132626 (-)
trnaw-cca-63 NA coding upstream 77485 35133863 ~ 35133934 (-)
trnaw-cca-64 NA coding upstream 79044 35135422 ~ 35135493 (-)
trnaw-cca-65 NA coding upstream 80603 35136981 ~ 35137052 (-)
G2131836 NA non-coding downstream 33296 34891885 ~ 34892090 (-)
G2131824 NA non-coding downstream 49696 34875054 ~ 34875690 (-)
G2131816 NA non-coding downstream 58143 34866665 ~ 34867243 (-)
G2131809 NA non-coding downstream 70849 34853560 ~ 34854537 (-)
G2131736 NA non-coding downstream 240118 34684981 ~ 34685268 (-)
G2131950 NA non-coding upstream 12140 35068518 ~ 35069139 (-)
G2131974 NA non-coding upstream 55618 35111996 ~ 35112449 (-)
G2131976 NA non-coding upstream 57315 35113693 ~ 35113937 (-)
G2131990 NA non-coding upstream 67022 35123400 ~ 35125723 (-)
G2132010 NA non-coding upstream 200309 35256687 ~ 35257074 (-)
G2131641 NA other downstream 407257 34516522 ~ 34518129 (-)
G2131621 NA other downstream 439210 34485869 ~ 34486176 (-)
G2130780 LOC106598333 other downstream 857313 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 858721 34040206 ~ 34066665 (-)
lyrm4 lyrm4 other upstream 949111 36005489 ~ 36017873 (-)
LOC118944844 riok1 other upstream 967402 36023714 ~ 36025735 (-)
G2132971 NA other upstream 1167835 36224213 ~ 36225379 (-)
G2132966 NA other upstream 1179137 36235515 ~ 36249775 (-)
G2133007 NA other upstream 1206624 36263002 ~ 36263330 (-)
G2131851 LOC106598110 non-coding downstream 11430 34936508 ~ 34945229 (-)
G2131873 NA non-coding upstream 10266 34977305 ~ 34977703 (-)
G2131880 NA non-coding upstream 23971 34991010 ~ 34991812 (-)
G2131906 NA non-coding upstream 74927 35041966 ~ 35042678 (-)

Expression


Co-expression Network