LOC110508240 (LOC106568781)


Basic Information

Item Value
gene id LOC110508240
gene name LOC106568781
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35391006 ~ 35429299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110508240
ATGATCTTCGAACACATTCCAGGAGTGGAGACTATGATGGATGACATCATCATCTGGGGGTCCACAAAAGAAGAACACGATGTGAGAGTGAGACAAGTGCTGGACCTGACACGGAAAGTCAACCTAAAACTAAACAAGGACAAATGCGAGTTTGGTGTGAAAACACTTACCTTCGTGGGAGATGTACTTTCAGAGGACGGAGTCAAACCAGACCCGAGGAAAACATCAGCCATCAACAACATGGAGCGCCCGAAGAACAAGGACGATGTGAGACGCTTCATGGATTATAGGTTGAGCGGTTATatagaaagagccataatactgCTGGGGAGCCTTCTTCTGGGCCTGTTGCTGGCCGGGGACTTGAGCCTGGCTCAGGAGGAAGATGGGAGTAGAGGAACCAGCCGAGGAGGCGGCTGCAGAAGATGACGAGGCTGCAGCGGAGGTGGCAGAGCCCGAGAGACAGAAGTTGGACCACCTAACAACCGGCAACCTTGTGCCATGTGGATGGGAGGAGTGCCAGGCACTTCAGGGCACAGTGGGAAACAAGGGTGAGACGGGAGAGATGGGCATGATAGCCTAcgaggagagaaaggagatacAGGAAACGGATACGGTGAACCAGGTGAGAATGGAGAGCCTGGCGACAACGGCCCTCTGGGTCCTTGTGGTTTCCCGAGCAACCCTGGTCTGAAGGGGGCGTAGGGCGACAGTGTCCTGCCGTATCACTCTTCCTTCAGCGTGGGCCTGACAGATCCCGTCCCTGCCTCCAACGTGCCCATCCACTTCAACAAATTCTTTCACAACGAGCAGCGCCACTACGATGACGTGAGCAGGAAGTTCCACTGCTCCCTCCTTGGGGTCTACTTCTTCACGTACCACCTCACCGTCTACACCAAGAACGACAAGCCCATCATGTTCACCTATAACCAGTACTACAAGGGCAATGTTGACCATGCCTCTGGGGCTATCACACTGAGGCTGGAGTCTGGGGACGAGGTGTGGCTGCAGATCTATGGAGGAGtttggagggggggggtgtatgcAGACAACACCAACGACTCCACCTTCTCCGGGTTTCTTTTGCATCCCGACATGGGAGCGTCGAAGGCTAGGAGGAGACTTCGCTCTGTTGAACTTAGATACTGA

Function

NR:

description
PREDICTED: adiponectin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110508240 True 1149 mRNA 0.54 3 35391006 35429299

Neighbor

gene id symbol gene type direction distance location
trnaw-cca-200 NA coding downstream 24311 35366624 ~ 35366695 (-)
trnaw-cca-199 NA coding downstream 25865 35365070 ~ 35365141 (-)
trnaw-cca-198 NA coding downstream 27424 35363511 ~ 35363582 (-)
trnaw-cca-197 NA coding downstream 28983 35361952 ~ 35362023 (-)
trnaw-cca-196 NA coding downstream 30542 35360393 ~ 35360464 (-)
LOC110509088 LOC106597204 coding upstream 87441 35516740 ~ 35575981 (-)
LOC110508241 LOC106596996 coding upstream 234617 35663916 ~ 35780400 (-)
tfr1a LOC106597167 coding upstream 352850 35782149 ~ 35813447 (-)
LOC110509089 LOC106597148 coding upstream 404684 35833983 ~ 35842022 (-)
LOC110509091 LOC106597174 coding upstream 440857 35865848 ~ 35925783 (-)
G2132074 NA non-coding downstream 4854 35385924 ~ 35386152 (-)
G2132018 NA non-coding downstream 34320 35356424 ~ 35356686 (-)
G2132016 NA non-coding downstream 55847 35334878 ~ 35335159 (-)
G2132010 NA non-coding downstream 133932 35256687 ~ 35257074 (-)
G2131990 NA non-coding downstream 265283 35123400 ~ 35125723 (-)
G2132106 NA non-coding upstream 18657 35447956 ~ 35448195 (-)
G2132134 NA non-coding upstream 72768 35502067 ~ 35502273 (-)
G2132208 NA non-coding upstream 117074 35546373 ~ 35546616 (-)
G2132215 NA non-coding upstream 125544 35554843 ~ 35555153 (-)
G2131641 NA other downstream 872877 34516522 ~ 34518129 (-)
G2131621 NA other downstream 904830 34485869 ~ 34486176 (-)
G2130780 LOC106598333 other downstream 1322933 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 1324341 34040206 ~ 34066665 (-)
lyrm4 lyrm4 other upstream 576190 36005489 ~ 36017873 (-)
LOC118944844 riok1 other upstream 594481 36023714 ~ 36025735 (-)
G2132971 NA other upstream 794914 36224213 ~ 36225379 (-)
G2132966 NA other upstream 806216 36235515 ~ 36249775 (-)
G2133007 NA other upstream 833703 36263002 ~ 36263330 (-)

Expression


Co-expression Network