LOC110509088 (LOC106597204)


Basic Information

Item Value
gene id LOC110509088
gene name LOC106597204
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35516740 ~ 35575981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590047.2
CTGTGAGGACGTGCTGTTCACTGGCGCAGACGTCAGCTGTGAAAGTGGTACAGCAATATAAACACTGACGGGGGGAGTCTTGTCCAGCCGTGCGTGTGGATTCTAAGTAGACTACCACACGGTGGAGCACAGCCCCGTCAAACTTTGTGCTGGTTTTAAACCCTGAACTGGAAAACAAAGTTATACATTCCCAACGAGCGCGCGGCCTATTTTGATCCACTTTTGGAAAACAAATTCCCCAGAGCAACAAGTGACTCTGCCATCAACTTTAATATATTGTTAGCCAACTCAGAAGCCCACATTTTTCAACTTTCCTAAAAATGCCAAGCACAAATTAGCTCTTGTTCAATCCACTGCGCGCGCTTGTGTAGAGAAAACGGATTGCGATGATCGTGTCCAACGTGAGCTTCAGCGGCTGCACGAGGGCCAATAGCGCGCTGTGTACTGGTGCTGCAGACAGGCACCTGGAACACAATTTATCCCGCACCACTCTCAGCCCGACCGGGAACCTGATAGTCTCAGTGTGTTTGGGCTTTATTGGCACCTTCGGATTCCTCAACAACCTCCTGGTTCTCGTCCTCTTCTGCCGTTACAAGGTGCTGCGCTCGCCTATCAACTTGCTACTGATTAACATTTCATTCAGTGATCtgctggtgtgtgtggtgggaacTCCGTTCAGTTTCGCGGCAAGTACACAGGGAAGATGGCTCATAGGAGAAAGTGGGTGTGTATGGTACGGCTTTGCCAATTCACTATTAGGCATCGTGTCCCTCATCTCCCTGGCCGTGCTCTCCTACGAGCGTTACACTACCATGATGGGTCCAACCGAGGCCGACTCCACCAACTACCGGAAGGTAGCCTTGGGCATCGCTTTCTCCTGGGTGTACTCACTGATGTGGACCCTGCCGCCGCTCTTCGGCTGGAGCCGCTACGGCCCCGAGGGGCCCGGCACCACCTGTTCAGTGGACTGGATGGCCAAGAGCGCCAACAATATCTCGTACATCATCTCGCTCTTTGTTTTCTGCCTCATCGTCCCCTTCCTGGTCATAGTCTACTGCTATGCTAAACTGATGCATGCAATCAAACAGGTTACCGCCATCAACACAGCTATGAGCAGGAAGAGGGAGCAGCGTGTTCTCGTCATGGTGGTAGTCATGGTGATGGTGTACCTGATGTGCTGGTTGCCGTATGGAGTCATGGCCTTGCTGGCCACCTTCGGACGCCCTGGCCTGGTCACCCCCGAGGCCAGCATCGTCCCCGCGATCATGGCCAAGACCAGCACGGTCTTCAACCCTGTTATCTATATCTTCATGAACAAGCAGTTCCACAGGTGTTTCCGAGCGCTGCTGAGGTGCCAAGAGCCTCAACGGGGTTCCAGCCTCAGGAACTCCTCCAAGGCACCGCCCAAAGCCGCCCGAGGCAGTGCCCGCAAAACCAACCAACACAACTTAACTTTCATGGTTGCCTCCCTTGGGCAGCCCACCAGCGATGTCCCCCAGCTGGGGAATGCAACCCTGGACTCAGCCGCCCCTGCTTACTCTGACATGGTCAGGCCCACCATTGTGTCGCTAGTGGCCCACTACAACGGCGGCCTGGGGCCAACAGGGGTTACAACCCCTAGGAACCAATtacagggaggggaggaggatccAGAGAAGTCGTCAAAGTGGATTTAGTGCTGTCAGTATGATGGACAGCAGGCTATAAAATCTGAATGCCTCCGGACTCTTTGGAAGTGGAGCCGCAGGAGCTGCTAGTGCATCTTTAGGAAGGACATCAATCTGTCTGGGTCTGCACAAGCTTATACATTCTGTCGCCGTTTACTAGCTCAAATACGCCTATGGACCGAGAGTGGGGAGAGAATGGTGCGAAGAACCCCAATTTATTTTGTGCAatttctaatgttttgtaaaaTATATTAGTTCCATGCCATGTCGATGTGATTTCACCCTCTGTCAGTGTACCTTTATAGTGcaaaaaaaacagagagagatgaagagtgtATTTTTGTACTGAGCGGAGATTGGAGTCACAGATTGAGGGAACTCAAGTATTGTATTTCAAGTATTTTCAGGAGACACGTTTCAAAGGTGTGACGATGACAAAGCGctcagaaaaaagaaaaaaaaattgaactgttAATGAATTCTGAGCATTGATCTATTGTTGTATTCCATTTTCTATCAAATAGTTTAAATTGGTTTCATCACTCGACACTTAAAACGTATTCAACTGTAACTAGTCACACGTTACTTGTTGTATATCATTTATCATAAACATAGGTAGCATGTCCGGTATGTATATTTCTTAATTTTATGTAAATATGCAAACGTATCACCAGGTGATAAAATGTGGAGGCAGGAGGTCCAGGgtacacttagaaaaaagggttcctaaAAGGTTATTTGGTTGTCTTACACCAAACTTGGCATGATCatcaatttcacagtattattccaacctcatagtgtgaaaatcacattttttttaaattgccctGGGCCTTTAAACAACTTTACAGCATTATGATACAATAGTTTGTTTCTATTCATGTGAAATATGATTGCAGATTTTATGATTTAGGCCTACGATTAGCTAGGTGtcgagacagaatgtgtctcacTGTAGACATGGTTAGATATCAACCCACTAAATTAGAATTGCTAACGTTAACATGGGCGTTACTCGCCACCCATCATCTTGATTGGTAATCAGCAATTACCCTTTTTATCACTACCACTACATCCCTGGTTACATTTTTTTGGGGCCAGTTTGTGTTACCCACATTTGGTCAAAACAAGAGACTTCCCGGTTAAGCCTATAATGACGTGAAATGATTGTAGTACACTTCTGTCGCATTGTAAAATGCTTCAAACACCACAGGCCTcatctatataaaaaaaatactttgaagttatCAATTAAAAGGTCTGACAGTAATTACCTGGAAATTATACAGTGATAATATATGAATTACTGCTAGCTACTTGCACTGCTAGCTAGTTTGTTTACTTTGACTAATTGGTCTAATTTGAATATCAGTTAAGTACTTTgggacatcaaactatgaaaatAATCACGTTTACATCATACCCAATTGGGTCTGAAGAATGTCAAAGTGCGCGGCTTGTTATGACATGACGGTGCAAAGAGGAAGTAGAGTCGTGGTTCAGAGCATGTGATCATATGAGTTTTACTATTACTGGCCTTGAGCCTTACATCATTTACTGTAGATGTTGGACCCCAACTTTTGAGGTTATACCCAGTGCTTCTGGTGGAAATTAAAATTTGGATTAGCGCAGCAGTAAGGAAGCCCACAATGGCCCACTTCATGTATAGTGAGTGCAGTATGAACAAAGCACACTTTCTGAATTATTTTCATTTTAACTGGAGCACATTGTTGTTCAAATCtgaaatatgtatattttttaaatgtaacctttatttaactagacaagtcagttaacttATTATACAATGAGCTGACAGGAGTCCCACATTTGCATATTGTTTGAAATGTGTTTGTTTGCTTAAAATCAGAGAAGTTGATGttacacaatttaaaaaaaacattaacaaTAGAATGGTTATGAAGGAGTTATTAAATGCTTGAATTGACCACGATGAATATGTGTAACCATTTGTAGTGGAATGTTATCTCACTGGGGGGAGAAAAATGCAttcaacactgtacatagatgtgTCCTTAACCAACTGACCACAGAGACAGTTGACTATGGACTGTAtcactgactgtatgtttgttttagaaatatataaataaatggacaGACCAGTTACAGTGCTTAAATAATGTTACAACAAAGTGAGAAGAATTTCATACTGTTTTGACGGTTGCGGTttaataaagttttttttatttttt
>TU2438013
TTGACTAATTGGTCTAATTTGAATATCAGTTAAGTACTTTgggacatcaaactatgaaaatAATCACGTTTACATCATACCCAATTGGGTCTGAAGAATGTCAAAGTGCGCGGCTTGTTATGACATGACGGTGCAAAGAGGAAGTAGAGTCGTGGTTCAGAGCATGTGATCATATGAGTTTTACTATTACTGGCCTTGAGCCTTACATCATTTACTGTAGATGTTGGACCCCAACTTTTGAGGTTATACCCAGTGCTTCTGGTGGAAATTAAAATTTGGATTAGCGCAGCAGTAAGGAAGCCCACAATGGCCCACTTCATGTATAGTGAGTGCAGTATGAACAAAGCACACTTTCTGAATTATTTTCATTTTAACTGGAGCACATTGTTGTTCAAATCtgaaatatgtatattttttaaatgtaacctttatttaactagacaagtcagttaacttATTATACAATGAGCTGACAGGAGTCCCACATTTGCATATTGTTTGAAATGTGTTTGTTTGCTTAAAATCAGAGAAGTTGATGttacacaatttaaaaaaaacattaacaaTAGAATGGTTATGAAGGAGTTATTAAATGCTTGAATTGACCACGATGAATATGTGTAACCATTTGTAGTGGAATGTTATCTCACTGGGGGGAGAAAAATGCAttcaacactgtacatagatgtgTCCTTAACCAACTGACCA
>TU2438014
GGAACCAATtacagggaggggaggaggatccAGAGAAGTCGTCAAAGTGGATTTAGTGCTGTCAGTATGATGGACAGCAGGCTATAAAATCTGAATGCCTCCGGACTCTTTGGAAGTGGAGCCGCAGGAGCTGCTAGTGCATCTTTAGGAAGGACATCAATCTGTCTGGGTCTGCACAAGCTTATACATTCTGTCGCCGTTTACTAGCTCAAATACGCCTATGGACC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590047.2 False 3886 mRNA 0.44 4 35516740 35575981
TU2438013 False 708 lncRNA 0.36 1 35516905 35517612
TU2438014 True 227 lncRNA 0.49 1 35518779 35519005

Neighbor

gene id symbol gene type direction distance location
LOC110508240 LOC106568781 coding downstream 87441 35391006 ~ 35429299 (-)
trnaw-cca-200 NA coding downstream 150045 35366624 ~ 35366695 (-)
trnaw-cca-199 NA coding downstream 151599 35365070 ~ 35365141 (-)
trnaw-cca-198 NA coding downstream 153158 35363511 ~ 35363582 (-)
trnaw-cca-197 NA coding downstream 154717 35361952 ~ 35362023 (-)
LOC110508241 LOC106596996 coding upstream 87935 35663916 ~ 35780400 (-)
tfr1a LOC106597167 coding upstream 206168 35782149 ~ 35813447 (-)
LOC110509089 LOC106597148 coding upstream 258002 35833983 ~ 35842022 (-)
LOC110509091 LOC106597174 coding upstream 294175 35865848 ~ 35925783 (-)
rpp40 rpp40 coding upstream 426872 36002853 ~ 36013047 (-)
G2132134 NA non-coding downstream 14467 35502067 ~ 35502273 (-)
G2132106 NA non-coding downstream 68545 35447956 ~ 35448195 (-)
G2132091 NA non-coding downstream 105878 35410473 ~ 35410862 (-)
G2132089 NA non-coding downstream 108594 35407928 ~ 35408146 (-)
G2132083 NA non-coding downstream 119485 35397017 ~ 35397255 (-)
G2132236 NA non-coding upstream 13184 35589165 ~ 35589433 (-)
G2132752 NA non-coding upstream 129708 35705689 ~ 35705921 (-)
G2132754 NA non-coding upstream 133105 35709086 ~ 35709337 (-)
G2132755 NA non-coding upstream 134091 35710072 ~ 35710391 (-)
G2131641 NA other downstream 998611 34516522 ~ 34518129 (-)
G2131621 NA other downstream 1030564 34485869 ~ 34486176 (-)
G2130780 LOC106598333 other downstream 1448667 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 1450075 34040206 ~ 34066665 (-)
lyrm4 lyrm4 other upstream 429508 36005489 ~ 36017873 (-)
LOC118944844 riok1 other upstream 447799 36023714 ~ 36025735 (-)
G2132971 NA other upstream 648232 36224213 ~ 36225379 (-)
G2132966 NA other upstream 659534 36235515 ~ 36249775 (-)
G2133007 NA other upstream 687021 36263002 ~ 36263330 (-)
G2132208 NA non-coding upstream 27368 35546373 ~ 35546616 (-)
G2132215 NA non-coding upstream 35838 35554843 ~ 35555153 (-)

Expression


Co-expression Network