LOC110509089 (LOC106597148)


Basic Information

Item Value
gene id LOC110509089
gene name LOC106597148
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35833983 ~ 35842022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966684.1
AGGTTATTTATTTCCCGTGTTTACATCCAAACCTTGTTCAATACCAGAGATGCCCAACGCTATATAGTTGCAAATGCAAAAACGGCATCGGATGGAAGCTTTGAGAGACGgtctccctctccccctatcaTCTCTGCGTCTGTTGGTTCCTCCCCTGCGGCTGGTGTCTGCAGCTCTATGGCAAGTTGTTCAGCAGAGAGACGTAATGGACTACGGGTTGGTGGAGGAGTTTGTCACCACTGTGTTGGAGAGAGTTCCTGATATGATGAGTTACAGGGAGAGAGTCCAACTCATCATGGGGCTGCGAGCACAGCTGGTTCTGGAGTTGTGTCGCTCTGATCACCTAGCCAACCCTGAGACCATCCAGCCACATCTGAATAGGATGAAGACCTGTATCATCACCCATAGGGGCAAGGAGATTTCTGATCCAGAGGTGGAAGCGTCAGAATCAAACTTCCTGAAGCTGATTCAAACTCTGCTGGAAGACCCAGTCGAGAAGGAATACTTCTTTCAGAGTGTGTTTTCAGAGGAATTTGGCCCCAAGTATAACTCAGCACTGCAGACTCTGGTGTGGGAGTTCCTCTCCAGGCTGGAGAAGCTGCTTCCAGCACCAACCCTTCAACAGACGGCATCTTGGTTCCTACCTGACCCCTCTGTCCTGGAGGAGTGTGTGCAGTGTGTATCCCACCCTCAGCCTTTGAAGACCCTTCTCCAGCACCACAACAacacatgtagacatgtagacaccaATGGTCTGTTTTCTGGCGACAATCAAATCCCAATCGAAGCTGACCCAGAGGTCCAATCAGAACCTGTGCAGCAATGTATGAGCCATGTCTCATCTGACAATGAGTCAGACATGACCCCTTTGTTGGAACTGGGGATTGATTCAGACCGAACTGTGCACAAAGGGGTGGGGCCTGTGCACAAAGGGGTGGGGCCTGTGCACAAAGGGGTGGAGCCTGTGCACAAAAATATtaaacacaacacaccaggtAAAGAGCTAGCAAAATATATGCAAAATAATAAATATTTTCACTACCTTAACACTGACAGTGGGCTGAAAATCCAAGGAAAAGCCCACAGCAGCCAACAGGAAGTGCAGGACATTTCTAATGTATCTACTTCCTGTCAGCTCCATCAGCCAACAGTGCTGCTGCACAGACTTGACATTGCTGATATGCTTTTACCTGTGACGGAGGTCTCTTCAACACCGAGGAGAGAGAGGCTTCAGATTGACAAAGTGGGATCccaaggacagagaagaggacaggTCATATCACAAAAGAGTGAGAGGAATATCAATGAAGAGCCCTCTGATGGTCAACCTCAGTATTCTCTGGCCCCTGACCCATCCCTTACCACAGGACAGCCTAAAAGAAGCAAGCGTGTCAAAATATGCTCCTTGTGTGGAAAGACTTTCAGCGAAGCAAAGGATTTGACGGCACACATGAGATGTCACAATGAGCAGAGCCCTTCCAAGTGCACCCAGTGTGGACAAGACTTTGAACACCATGAGGACTTACAGAAACATCAGCAGAATGTGTGTGAGGCGGCAGCTCAACCAGAAGAGGACAACATGTCTACGACATCTGTGGAGGATCAGACGGAACTAGCATGCACGGAGCTATCAGAGTCGTCCAAAGCCAGGACTTGCCGTGTGTGTCATAAAACTGTCTATAGTAGAAATTATTTGAGAAAGCACCTGAAATCCCAACACGGTCAACTCCTGAAGATGCGTAAGAAACACAAAAATATTATCTGTTGCATTATGTGTAATAAGTCCTTTGATATTTCTGAGCCAAACAAGTGTGAGGTGAACCAACAGCAACTCCCCAGGAAGGCACACCCAGAGGCCAACACACTTATTGCTGCAGTGATACCACAGCCCTCAAGCACTCCATCCCAGAACCCAACAACCTCCAATGCTCTGCCCATTCAGGCACAGTTCTACAATGACTACAGAACATGTCTTTTGTGCAATGAAACTTTCGATACCGCAGAGACCATGAGAAAGCACCTAAGATTTCAACACAATATACTGTCTTACTTGTGCCACGATTGTGGGGAAAGTTTCCCAAGCAAATTAGATCTTCAGAAACACTCAAATAATTGTTTGAGTATTCCAGATTCAAGAAAATGTCATGAGTGCAGGAAAATTACTCCTCAAACAACGCAGCCGCAAGCAAACATTTGTCAGGAGATGAACCAAAGACAACAGCAACTACCTGCAGGGGGAAATGAGATGGAGATCCCTCAGTCCTCCAACACAGACGTTAACTCATTAAATGACTTGCAGCAATGCCAGCCAAATGAGTGTGAGAAGATTCACTTTCAGGGAGGGCAGCAAGACTGGAGTGAGGAGGTTGATCCAAACCAGCATCCAGAGGAGGTTGATCCAGAGGAGGTTGATCCAGCCGACAGAAGCAGTTCTCTGATTCCAAGGGAGAATGGGACAGAGATTCCCCAGAGCCATAGCACTTCACCCCAGAACCCAACAACCTTCGATGCTCCCCCCACTCAGACGCAGCCACCTGGCATCTCTCCCCCAGCCTCGCTAAAATCTAGAACATGCCCTTTGTGCTCAAAATGTTTTGCTTATAAAAAGACCATGATGCAGCATCTGAGACGTCATTCACAGGGTCAGGGACCCTTCATGTGCACCACATGTTCAAAGAGCTTTGGTACCGCCAGCGATTTGAAGAGACATCAGGGAATTAAGAGCGGTTGTGGGCCAAATCATCGAAATCTCGTCGTACCTGAGAATGTTCCCACAGAACAAAAAACTGTCTTCTCCTGCCCCCATTGTCGGGGACAGTACACGAGTGAAAAGAAATTGAAAGCACACATGGTATGTCACACAGGAGATGGGTTCACCTGTAGGTTTTGTGGCAAGATATTTGCTGAAGATAAGAAATTACGCAATCATGTTCGTTCTCATATTGACAGACGACATCTATGTGACACATGTGGTAAAGATTTTACATCTCTGTCTAACTTGAAAAAACACACACTTGTACACACGGGAGAACAGCCGTACATTTGCACAGACTGTGGCAAACGTTTTAGTCTGAAGGGTAACCTGAAAGTCCATCAACAGAGTCATACAGGAGAGCGGCCATTTGCGTGCACAATGTGTAAAATACGCTGTTTCACTCAGACTCATCTAAAACGACATATGTTGaggcacacaggagagaagcctcatAAGTGTTTGGCTTGTGGGAAGACATTTCAACGGAAAAACACATTGAGGAAACATCAGCAAGATTCGTGTTCTTAGTTCTTGGCTTTTACACACTGCCTTCTTGAGAGGCAGACTCAGTCATACTTTTTTTTTCGCTCAACATTGATTACATTTAGTTGATGACATTAATGGCTTGCAATTGGTTGTAGGTTCTAGTCAACAGACAAGTAGGCATCCATCTTTTGCTACTTTAACTTTTTGCATATTTGTAATATCTAgccgttttgtgtgtgtgtgtgtgtaaaggataTTGTCAATGGGTTGCTGTACAATGCTGAcagaaaaataatatatattctgTTTTGTGTCAAATGTTGCCTTTTTTTCTGTCAGCATTGTACAGCAACCCATTGACAATATCCTTGACAAACTGCAAATGTAAGTCTACAAGAGAGATTGAAATAAGCACAACATAGGTAGACCGTATGCATTTTGAATGTAAACAAGTATAAATTGTCACCCCTCCATTTTGTTATTGTGTTTAACAATGCTCATGTGCTGTGATCTTATTTACTATTATGTATTGATTTCTTCTTCAGTCTTTATGGGATGTGCACTGCACAGAACACAGGAAGTATAATGACTGAATTATCACggaattattgtaatgtttgtgtCAGTTTAATCCTGTAAGGGATGGATTGCCAACTGGCAATTTgacacaaaaataaaatgtaattcacCACA
>XM_036966685.1
AGACCAGTGTTTACGACCTTTTTACGACAAAAGGTTATTTATTTCCCGTGTTTACATCCAAACCTTGTTCAATACCAGAGATGCCCAACGCTATATAGTTGCAAATGCAAAAACGGCATCGGATGGAAGCTTTGAGAGACGGtctccccctatcaTCTCTGCGTCTGTTGGTTCCTCCCCTGCGGCTGGTGTCTGCAGCTCTATGGCAAGTTGTTCAGCAGAGAGACGTAATGGACTACGGGTTGGTGGAGGAGTTTGTCACCACTGTGTTGGAGAGAGTTCCTGATATGATGAGTTACAGGGAGAGAGTCCAACTCATCATGGGGCTGCGAGCACAGCTGGTTCTGGAGTTGTGTCGCTCTGATCACCTAGCCAACCCTGAGACCATCCAGCCACATCTGAATAGGATGAAGACCTGTATCATCACCCATAGGGGCAAGGAGATTTCTGATCCAGAGGTGGAAGCGTCAGAATCAAACTTCCTGAAGCTGATTCAAACTCTGCTGGAAGACCCAGTCGAGAAGGAATACTTCTTTCAGAGTGTGTTTTCAGAGGAATTTGGCCCCAAGTATAACTCAGCACTGCAGACTCTGGTGTGGGAGTTCCTCTCCAGGCTGGAGAAGCTGCTTCCAGCACCAACCCTTCAACAGACGGCATCTTGGTTCCTACCTGACCCCTCTGTCCTGGAGGAGTGTGTGCAGTGTGTATCCCACCCTCAGCCTTTGAAGACCCTTCTCCAGCACCACAACAacacatgtagacatgtagacaccaATGGTCTGTTTTCTGGCGACAATCAAATCCCAATCGAAGCTGACCCAGAGGTCCAATCAGAACCTGTGCAGCAATGTATGAGCCATGTCTCATCTGACAATGAGTCAGACATGACCCCTTTGTTGGAACTGGGGATTGATTCAGACCGAACTGTGCACAAAGGGGTGGGGCCTGTGCACAAAGGGGTGGGGCCTGTGCACAAAGGGGTGGAGCCTGTGCACAAAAATATtaaacacaacacaccaggtAAAGAGCTAGCAAAATATATGCAAAATAATAAATATTTTCACTACCTTAACACTGACAGTGGGCTGAAAATCCAAGGAAAAGCCCACAGCAGCCAACAGGAAGTGCAGGACATTTCTAATGTATCTACTTCCTGTCAGCTCCATCAGCCAACAGTGCTGCTGCACAGACTTGACATTGCTGATATGCTTTTACCTGTGACGGAGGTCTCTTCAACACCGAGGAGAGAGAGGCTTCAGATTGACAAAGTGGGATCccaaggacagagaagaggacaggTCATATCACAAAAGAGTGAGAGGAATATCAATGAAGAGCCCTCTGATGGTCAACCTCAGTATTCTCTGGCCCCTGACCCATCCCTTACCACAGGACAGCCTAAAAGAAGCAAGCGTGTCAAAATATGCTCCTTGTGTGGAAAGACTTTCAGCGAAGCAAAGGATTTGACGGCACACATGAGATGTCACAATGAGCAGAGCCCTTCCAAGTGCACCCAGTGTGGACAAGACTTTGAACACCATGAGGACTTACAGAAACATCAGCAGAATGTGTGTGAGGCGGCAGCTCAACCAGAAGAGGACAACATGTCTACGACATCTGTGGAGGATCAGACGGAACTAGCATGCACGGAGCTATCAGAGTCGTCCAAAGCCAGGACTTGCCGTGTGTGTCATAAAACTGTCTATAGTAGAAATTATTTGAGAAAGCACCTGAAATCCCAACACGGTCAACTCCTGAAGATGCGTAAGAAACACAAAAATATTATCTGTTGCATTATGTGTAATAAGTCCTTTGATATTTCTGAGCCAAACAAGTGTGAGGTGAACCAACAGCAACTCCCCAGGAAGGCACACCCAGAGGCCAACACACTTATTGCTGCAGTGATACCACAGCCCTCAAGCACTCCATCCCAGAACCCAACAACCTCCAATGCTCTGCCCATTCAGGCACAGTTCTACAATGACTACAGAACATGTCTTTTGTGCAATGAAACTTTCGATACCGCAGAGACCATGAGAAAGCACCTAAGATTTCAACACAATATACTGTCTTACTTGTGCCACGATTGTGGGGAAAGTTTCCCAAGCAAATTAGATCTTCAGAAACACTCAAATAATTGTTTGAGTATTCCAGATTCAAGAAAATGTCATGAGTGCAGGAAAATTACTCCTCAAACAACGCAGCCGCAAGCAAACATTTGTCAGGAGATGAACCAAAGACAACAGCAACTACCTGCAGGGGGAAATGAGATGGAGATCCCTCAGTCCTCCAACACAGACGTTAACTCATTAAATGACTTGCAGCAATGCCAGCCAAATGAGTGTGAGAAGATTCACTTTCAGGGAGGGCAGCAAGACTGGAGTGAGGAGGTTGATCCAAACCAGCATCCAGAGGAGGTTGATCCAGAGGAGGTTGATCCAGCCGACAGAAGCAGTTCTCTGATTCCAAGGGAGAATGGGACAGAGATTCCCCAGAGCCATAGCACTTCACCCCAGAACCCAACAACCTTCGATGCTCCCCCCACTCAGACGCAGCCACCTGGCATCTCTCCCCCAGCCTCGCTAAAATCTAGAACATGCCCTTTGTGCTCAAAATGTTTTGCTTATAAAAAGACCATGATGCAGCATCTGAGACGTCATTCACAGGGTCAGGGACCCTTCATGTGCACCACATGTTCAAAGAGCTTTGGTACCGCCAGCGATTTGAAGAGACATCAGGGAATTAAGAGCGGTTGTGGGCCAAATCATCGAAATCTCGTCGTACCTGAGAATGTTCCCACAGAACAAAAAACTGTCTTCTCCTGCCCCCATTGTCGGGGACAGTACACGAGTGAAAAGAAATTGAAAGCACACATGGTATGTCACACAGGAGATGGGTTCACCTGTAGGTTTTGTGGCAAGATATTTGCTGAAGATAAGAAATTACGCAATCATGTTCGTTCTCATATTGACAGACGACATCTATGTGACACATGTGGTAAAGATTTTACATCTCTGTCTAACTTGAAAAAACACACACTTGTACACACGGGAGAACAGCCGTACATTTGCACAGACTGTGGCAAACGTTTTAGTCTGAAGGGTAACCTGAAAGTCCATCAACAGAGTCATACAGGAGAGCGGCCATTTGCGTGCACAATGTGTAAAATACGCTGTTTCACTCAGACTCATCTAAAACGACATATGTTGaggcacacaggagagaagcctcatAAGTGTTTGGCTTGTGGGAAGACATTTCAACGGAAAAACACATTGAGGAAACATCAGCAAGATTCGTGTTCTTAGTTCTTGGCTTTTACACACTGCCTTCTTGAGAGGCAGACTCAGTCATACTTTTTTTTTCGCTCAACATTGATTACATTTAGTTGATGACATTAATGGCTTGCAATTGGTTGTAGGTTCTAGTCAACAGACAAGTAGGCATCCATCTTTTGCTACTTTAACTTTTTGCATATTTGTAATATCTAgccgttttgtgtgtgtgtgtgtgtaaaggataTTGTCAATGGGTTGCTGTACAATGCTGAcagaaaaataatatatattctgTTTTGTGTCAAATGTTGCCTTTTTTTCTGTCAGCATTGTACAGCAACCCATTGACAATATCCTTGACAAACTGCAAATGTAAGTCTACAAGAGAGATTGAAATAAGCACAACATAGGTAGACCGTATGCATTTTGAATGTAAACAAGTATAAATTGTCACCCCTCCATTTTGTTATTGTGTTTAACAATGCTCATGTGCTGTGATCTTATTTACTATTATGTATTGATTTCTTCTTCAGTCTTTATGGGATGTGCACTGCACAGAACACAGGAAGTATAATGACTGAATTATCACggaattattgtaatgtttgtgtCAGTTTAATCCTGTAAGGGATGGATTGCCAACTGGCAATTTgacacaaaaataaaatgtaattcacCACA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106597148 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966684.1 False 3934 mRNA 0.45 7 35833983 35841991
XM_036966685.1 True 3959 mRNA 0.45 7 35833983 35842022

Neighbor

gene id symbol gene type direction distance location
tfr1a LOC106597167 coding downstream 20536 35782149 ~ 35813447 (-)
LOC110508241 LOC106596996 coding downstream 53583 35663916 ~ 35780400 (-)
LOC110509088 LOC106597204 coding downstream 258002 35516740 ~ 35575981 (-)
LOC110508240 LOC106568781 coding downstream 404684 35391006 ~ 35429299 (-)
trnaw-cca-200 NA coding downstream 467288 35366624 ~ 35366695 (-)
LOC110509091 LOC106597174 coding upstream 28134 35865848 ~ 35925783 (-)
rpp40 rpp40 coding upstream 160831 36002853 ~ 36013047 (-)
lyrm4 lyrm4 coding upstream 174064 36005489 ~ 36017873 (-)
LOC118944844 riok1 coding upstream 181692 36023714 ~ 36025735 (-)
LOC110509099 LOC106597112 coding upstream 202019 36044041 ~ 36052176 (-)
G2132812 NA non-coding downstream 13898 35819775 ~ 35820085 (-)
G2132798 NA non-coding downstream 55377 35778353 ~ 35778606 (-)
G2132794 NA non-coding downstream 58633 35774336 ~ 35775350 (-)
G2132793 NA non-coding downstream 60055 35773598 ~ 35773928 (-)
G2132824 NA non-coding upstream 2344 35844366 ~ 35844638 (-)
G2132825 NA non-coding upstream 4018 35846040 ~ 35846366 (-)
G2132827 NA non-coding upstream 6216 35848238 ~ 35848523 (-)
G2132792 NA non-coding upstream 8460 35850482 ~ 35852434 (-)
G2131641 NA other downstream 1315854 34516522 ~ 34518129 (-)
G2131621 NA other downstream 1347807 34485869 ~ 34486176 (-)
G2130780 LOC106598333 other downstream 1765910 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 1767318 34040206 ~ 34066665 (-)
G2132971 NA other upstream 382191 36224213 ~ 36225379 (-)
G2132966 NA other upstream 393493 36235515 ~ 36249775 (-)
G2133007 NA other upstream 420980 36263002 ~ 36263330 (-)

Expression


Co-expression Network