LOC110509092 (LOC106597187)


Basic Information

Item Value
gene id LOC110509092
gene name LOC106597187
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 35852550 ~ 35864073 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590054.2
aatagaaaataaaaacattgatGTATTCAATACATATGCGAAAAGATTATAATTAATATTATTGCTGTTATGTACAACTTCCCTTTTATGTTGAACGCTTTTTGATTACAGGGAGTGACGTGTTTTGGTTTTCCACCAAAACCTCCGACtgaattgtaatgttttttaaaatggCGTTACCCGCTGTCACTCGTGCATTCTTTACTAATAGGAATCAAATAAAGCAATGTATGGCAGAGGGCTTCCGCAACCTGTCTTTAGATAGTCGAGTTCACGCGAGGACACAATCATTGAAATGTCTGAAAAGGACGACTTCTCAATCGTATGCTATCCATGCTACTGTGCACAGAAGGTCACCGCTATACCGCAGCTGCGAAAGCAATGGCGATGAAAATAGTCGTGCTACTAGTAACTGGACTTATGCAATGGGGAGTGTAATTGCGTTCTCTCTCTTCAGCAAAGCTGAGGAGGACACCAGAACTGATGCCCAGAAGAAAGAAGATGAGATTATTTTACTTTTGAAGAGAGCCAAGCTCAGTATGATGCGGGGGCAGTTGCATGGAGCCAATGGATTCCTCCACCAGGCCATCGCGCTGGCCCACCAGACTAACAATACACAAGCTATCATCTACACCTACAGCTTGATGGCGAACCTTGCCTATGTCCAAGGTCAGCTGGATAATGCAGAGAAACTCTTCAAAGTGGCCATGAGTTTCATGTTGTCCGAAGGAACACCACAGGATGACAATGGGGTCATTGAGATGTCCTTGAAGCTCGCTACCATATATGCCGGCCAGGAGAAGAATGACTTGGCAGAGATGGGTTTCCAGTTTTGCACTGAATCCCTTGAAACCAAGTTGGAGAAATTCAAGGAACTTCCTGCTGAGGAGCAATCGGaGGAGTTGCGGAAGGAGACCCGGCTCCTACTGGGCCTGACCCTGGACTCCCACGCCCGCTACATGGTCGCTATACACCGCCTGAGCCAGGCGGTGGTGGACTACAAGCAAGCCTTGCTGATCTGTCAGGAAGAGCAGGGAGAGACCCACCCACAGTCCTTGGTGCTGATGAGTGACCTGGCCACCATCCTGGACATGCAGGGTTGCCACGATGAGGCTCTGTCCCTGGTGAAGCAGGCTGTGGAGCTGAGCAGAGAAGCCGGCCACCCTGACCAACATGTGCTGCTGGGAAACATGGCAGGCATCCTACTGCACAATGATCTTTTTGAAGAGTCTGTGAAGCTGTACAAGGAGGCCCTGGCTCTGGCCCAGTCTGCAGGAGATGAAGAAGCACTGGAGCAGATCCAGGAGGGACTGAAAGAGGTGGGCAACAGGAGGAAAGCACAGAAGGCAGAAGCAGCCAAGAATAAGACCGACTGACCGGTTGGATCAACTAAACTAATCTTATTAACACAACCCCCAAGCAATCTCTCTTAACTTGTCTGTGCTGGAGGGATCTGAGTGGTCAGTGTTAGCACACGTTATGGAGTACAGGGCATTTAGCTCAGAAAGAGAAGAACAACAACACTGTCACATCGTAACAGATGTCTTGGAACAGTTTCTTACACTGGGCAATTAACAATTATCTGTGAAACCCCAATGATGTTGTCTGTATTGTGGGAAATCTCACTCCTTCAATGTGGTGTCTGTTTGTTGTCAGATTGGCATTAAGATGTAATGGGAACACCTCAGGGCTTAATTAAGTCCATGGCCAGAATTCAATCAAAAGGTGTGTTGTCGACAAGCGTAATTGCACTTGACTTTTAAATTTACGTTTGTGCTGGCATCTTCAGAGTTTGTCATGAATGCGATCTCTCCACGAACGTCGAGGGGGAAATGCCCTTTTACAAAAGGCACATTGTTCGACAGAGCGATTGATGACAATGTGTCTTGTTTGAATTCAACCCTGAATGATGGCGCCTTAGTCTGACTTTGCTGTCTGAATCACTAAATTAAACTAAGATGTGTAAATGTTGTATGGGCTAGAATGGCACATAGGACTTAACTGGCAGCTTCAAGAGTGAAAGGCCTAATCAATAACCTTTTTGTGAACAGAGATGTATCATAAAAACTGTCTTTAAGATGGTaaaaactgtatatatattacatccagtgcatttggaaataattccgaccttgactttttccacattttgatacgttatagccttattctaaaatggattaaatagttgttttcccctcatcaatcaa
>XM_021590055.2
aatagaaaataaaaacattgatGTATTCAATACATATGCGAAAAGATTATAATTAATATTATTGCTGTTATGTACAACTTCCCTTTTATGTTGAACGCTTTTTGATTACAGGGAGTGACGTGTTTTGGTTTTCCACCAAAACCTCCGACtgaattgtaatgttttttaaaatggCGTTACCCGCTGTCACTCGTGCATTCTTTACTAATAGGAATCAAATAAAGCAATGTATGGCAGAGGGCTTCCGCAACCTGTCTTTAGATAGTCGAGTTCACGCGAGGACACAATCATTGAAATGTCTGAAAAGGACGACTTCTCAATCGTATGCTATCCATGCTACTGTGCACAGAAGGTCACCGCTATACCGCAGCTGCGAAAGCAATGGCGATGAAAATAGTCGTGCTACTAGTAACTGGACTTATGCAATGGGGAGTGTAATTGCGTTCTCTCTCTTCAGCAAAGCTGAGGAGGACACCAGAACTGATGCCCAGAAGAAAGAAGATGAGATTATTTTACTTTTGAAGAGAGCCAAGATGGCGAACCTTGCCTATGTCCAAGGTCAGCTGGATAATGCAGAGAAACTCTTCAAAGTGGCCATGAGTTTCATGTTGTCCGAAGGAACACCACAGGATGACAATGGGGTCATTGAGATGTCCTTGAAGCTCGCTACCATATATGCCGGCCAGGAGAAGAATGACTTGGCAGAGATGGGTTTCCAGTTTTGCACTGAATCCCTTGAAACCAAGTTGGAGAAATTCAAGGAACTTCCTGCTGAGGAGCAATCGGaGGAGTTGCGGAAGGAGACCCGGCTCCTACTGGGCCTGACCCTGGACTCCCACGCCCGCTACATGGTCGCTATACACCGCCTGAGCCAGGCGGTGGTGGACTACAAGCAAGCCTTGCTGATCTGTCAGGAAGAGCAGGGAGAGACCCACCCACAGTCCTTGGTGCTGATGAGTGACCTGGCCACCATCCTGGACATGCAGGGTTGCCACGATGAGGCTCTGTCCCTGGTGAAGCAGGCTGTGGAGCTGAGCAGAGAAGCCGGCCACCCTGACCAACATGTGCTGCTGGGAAACATGGCAGGCATCCTACTGCACAATGATCTTTTTGAAGAGTCTGTGAAGCTGTACAAGGAGGCCCTGGCTCTGGCCCAGTCTGCAGGAGATGAAGAAGCACTGGAGCAGATCCAGGAGGGACTGAAAGAGGTGGGCAACAGGAGGAAAGCACAGAAGGCAGAAGCAGCCAAGAATAAGACCGACTGACCGGTTGGATCAACTAAACTAATCTTATTAACACAACCCCCAAGCAATCTCTCTTAACTTGTCTGTGCTGGAGGGATCTGAGTGGTCAGTGTTAGCACACGTTATGGAGTACAGGGCATTTAGCTCAGAAAGAGAAGAACAACAACACTGTCACATCGTAACAGATGTCTTGGAACAGTTTCTTACACTGGGCAATTAACAATTATCTGTGAAACCCCAATGATGTTGTCTGTATTGTGGGAAATCTCACTCCTTCAATGTGGTGTCTGTTTGTTGTCAGATTGGCATTAAGATGTAATGGGAACACCTCAGGGCTTAATTAAGTCCATGGCCAGAATTCAATCAAAAGGTGTGTTGTCGACAAGCGTAATTGCACTTGACTTTTAAATTTACGTTTGTGCTGGCATCTTCAGAGTTTGTCATGAATGCGATCTCTCCACGAACGTCGAGGGGGAAATGCCCTTTTACAAAAGGCACATTGTTCGACAGAGCGATTGATGACAATGTGTCTTGTTTGAATTCAACCCTGAATGATGGCGCCTTAGTCTGACTTTGCTGTCTGAATCACTAAATTAAACTAAGATGTGTAAATGTTGTATGGGCTAGAATGGCACATAGGACTTAACTGGCAGCTTCAAGAGTGAAAGGCCTAATCAATAACCTTTTTGTGAACAGAGATGTATCATAAAAACTGTCTTTAAGATGGTaaaaactgtatatatattacatccagtgcatttggaaataattccgaccttgactttttccacattttgatacgttatagccttattctaaaatggattaaatagttgttttcccctcatcaatcaa
>XM_036966626.1
CGACtgaattgtaatgttttttaaaatggCGTTACCCGCTGTCACTCGTGCATTCTTTACTAATAGGAATCAAATAAAGCAATGTATGGCAGAGGGCTTCCGCAACCTGTCTTTAGATAGTCGAGTTCACGCGAGGACACAATCATTGAAATGTCTGAAAAGGACGACTTCTCAATCGTATGCTATCCATGCTACTGTGCACAGAAGGTCACCGCTATACCGCAGCTGCGAAAGCAATGGCGATGAAAATAGTCGTGCTACTAGTAACTGGACTTATGCAATGGGGAGTGTAATTGCGTTCTCTCTCTTCAGCAAAGCTGAGGAGGACACCAGAACTGATGCCCAGAAGAAAGAAGATGAGATTATTTTACTTTTGAAGAGAGCCAAGTATGATGCGGGGGCAGTTGCATGGAGCCAATGGATTCCTCCACCAGGCCATCGCGCTGGCCCACCAGACTAACAATACACAAGCTATCATCTACACCTACAGCTTGATGGCGAACCTTGCCTATGTCCAAGGTCAGCTGGATAATGCAGAGAAACTCTTCAAAGTGGCCATGAGTTTCATGTTGTCCGAAGGAACACCACAGGATGACAATGGGGTCATTGAGATGTCCTTGAAGCTCGCTACCATATATGCCGGCCAGGAGAAGAATGACTTGGCAGAGATGGGTTTCCAGTTTTGCACTGAATCCCTTGAAACCAAGTTGGAGAAATTCAAGGAACTTCCTGCTGAGGAGCAATCGGaGGAGTTGCGGAAGGAGACCCGGCTCCTACTGGGCCTGACCCTGGACTCCCACGCCCGCTACATGGTCGCTATACACCGCCTGAGCCAGGCGGTGGTGGACTACAAGCAAGCCTTGCTGATCTGTCAGGAAGAGCAGGGAGAGACCCACCCACAGTCCTTGGTGCTGATGAGTGACCTGGCCACCATCCTGGACATGCAGGGTTGCCACGATGAGGCTCTGTCCCTGGTGAAGCAGGCTGTGGAGCTGAGCAGAGAAGCCGGCCACCCTGACCAACATGTGCTGCTGGGAAACATGGCAGGCATCCTACTGCACAATGATCTTTTTGAAGAGTCTGTGAAGCTGTACAAGGAGGCCCTGGCTCTGGCCCAGTCTGCAGGAGATGAAGAAGCACTGGAGCAGATCCAGGAGGGACTGAAAGAGGTGGGCAACAGGAGGAAAGCACAGAAGGCAGAAGCAGCCAAGAATAAGACCGACTGACCGGTTGGATCAACTAAACTAATCTTATTAACACAACCCCCAAGCAATCTCTCTTAACTTGTCTGTGCTGGAGGGATCTGAGTGGTCAGTGTTAGCACACGTTATGGAGTACAGGGCATTTAGCTCAGAAAGAGAAGAACAACAACACTGTCACATCGTAACAGATGTCTTGGAACAGTTTCTTACACTGGGCAATTAACAATTATCTGTGAAACCCCAATGATGTTGTCTGTATTGTGGGAAATCTCACTCCTTCAATGTGGTGTCTGTTTGTTGTCAGATTGGCATTAAGATGTAATGGGAACACCTCAGGGCTTAATTAAGTCCATGGCCAGAATTCAATCAAAAGGTGTGTTGTCGACAAGCGTAATTGCACTTGACTTTTAAATTTACGTTTGTGCTGGCATCTTCAGAGTTTGTCATGAATGCGATCTCTCCACGAACGTCGAGGGGGAAATGCCCTTTTACAAAAGGCACATTGTTCGACAGAGCGATTGATGACAATGTGTCTTGTTTGAATTCAACCCTGAATGATGGCGCCTTAGTCTGACTTTGCTGTCTGAATCACTAAATTAAACTAAGATGTGTAAATGTTGTATGGGCTAGAATGGCACATAGGACTTAACTGGCAGCTTCAAGAGTGAAAGGCCTAATCAATAACCTTTTTGTGAACAGAGATGTATCATAAAAACTGTCTTTAAGATGGTaaaaactgtatatatattacatccagtgcatttggaaataattccgaccttgactttttccacattttgatacgttatagccttattctaaaatggattaaatagttgttttcccctcatcaatcaa

Function

NR:

description
tetratricopeptide repeat protein 19, mitochondrial-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590054.2 False 2210 mRNA 0.45 10 35852550 35864073
XM_021590055.2 False 2099 mRNA 0.45 9 35852550 35864073
XM_036966626.1 True 2060 mRNA 0.46 10 35852695 35864073

Neighbor

gene id symbol gene type direction distance location
LOC110509087 LOC106588083 coding upstream 467625 35372225 ~ 35384925 (+)
trnak-uuu-285 NA coding upstream 485614 35366864 ~ 35366936 (+)
trnak-uuu-284 NA coding upstream 487168 35365310 ~ 35365382 (+)
trnak-uuu-283 NA coding upstream 488727 35363751 ~ 35363823 (+)
trnak-uuu-282 NA coding upstream 490286 35362192 ~ 35362264 (+)
LOC110508289 LOC106597230 coding downstream 109313 35973386 ~ 35975132 (+)
LOC110509094 LOC106597143 coding downstream 121442 35985515 ~ 35998946 (+)
riok1 riok1 coding downstream 164474 36028547 ~ 36039262 (+)
LOC110509101 LOC106597086 coding downstream 244553 36108626 ~ 36178080 (+)
ubtfl ubf1 coding downstream 314693 36178766 ~ 36197438 (+)
G2132376 NA non-coding upstream 2360 35849555 ~ 35850190 (+)
G2132375 NA non-coding upstream 3442 35847803 ~ 35849108 (+)
G2132374 NA non-coding upstream 8184 35844131 ~ 35844366 (+)
G2132371 NA non-coding upstream 14401 35837740 ~ 35838149 (+)
G2132356 NA non-coding upstream 37215 35815069 ~ 35815335 (+)
G2132435 NA non-coding downstream 86611 35950684 ~ 35950947 (+)
G2132437 NA non-coding downstream 87869 35951942 ~ 35952278 (+)
G2132439 NA non-coding downstream 91982 35956055 ~ 35956360 (+)
G2132441 NA non-coding downstream 93966 35958039 ~ 35958432 (+)
G2132442 NA non-coding downstream 94371 35958444 ~ 35958772 (+)
G2132291 NA other upstream 152315 35699846 ~ 35700235 (+)
G2131933 NA other upstream 759516 35091699 ~ 35093034 (+)
G2131426 NA other upstream 1069132 34702206 ~ 34783418 (+)
G2131416 NA other upstream 1164910 34687271 ~ 34687640 (+)
G2131383 NA other upstream 1247597 34603485 ~ 34604953 (+)
G2132519 LOC100380659 other downstream 475021 36339094 ~ 36364994 (+)
G2132611 LOC100380659 other downstream 501483 36365556 ~ 36369967 (+)
LOC110509112 LOC106597339 other downstream 658681 36522754 ~ 36528580 (+)
G2133551 NA other downstream 1174580 37038653 ~ 37038924 (+)

Expression


Co-expression Network