rpp40 (rpp40)


Basic Information

Item Value
gene id rpp40
gene name rpp40
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36002853 ~ 36013047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590059.2
TGACAAGCAAGCACGCTGGCTCTCTAGCCGGAAGTAGTTTACAAGTTCAGAGAGGAAGATACTGTATTTCACATGTTTGATTCACAAGTGTGTGTATAGCTAAATGTCTTTGGTTTAAATGTGTTTAGATTTGTTGTTTTTGATACAAGTCTAATACAATGTACCCGGAGCTAGACAAGTGTCCAAGAAGTTTACTTGTTTGCGAGAAATCGAACTTTGAGCATGAAAAGTCTAGACACGACACTCACGTGTCAAAACATTATTTTAACCACAAGGTGTCGGTTGTAATACCGGGATGTGGTGCCCTTTCTTCCCGGCTGGCCACTGTCATAAACAATTTCAGCAAGTATTTTCTGGTGAATAATTTACCAGTCTATGAGTTTTTGGATAAAGACTTCTTGAAGAATGTTGTGTGGGATGgcgctctctatGCTCTTTCCTACAAGACAAGCATTGACCAGGATAACACCATTGCACTTCTCCCTAGCGGTCAGCTGATCCTCTCTGTGGATAAGGACACGTATGAACAGCTGGGTGTGGAGGGAAAGCCGTCACAGTACAATCACAGACAGCCCATGAGATATGTCGTGACCATTGACCTGACGGACAAATCCATGGCGCCGGAAGGGAAGCGCTACCAGCGAGTTCTCTCCAGCCTTAAAGAAAGGGTGCCTCTGAAAAGCGACTTCCTGCTAGGACGGCACAATTCGGAAACTCAAGGGGCGGATGGGGATAGAGCGCTGCAGAGTCTCCTGTCCCGTTACCAGTGGAAAGAGCACAGACCAGTGGTCAGTAGCCACACCCTGAAGGATCTGCCATGTCCATCCCTGAACGCTTTGGACCTGCGCGGGGACCAGCGGTCTTGTGACCCCCACAGCTTCCTGGAGTGGCTTGGAGCAGTGAGCGCTGGTGTCAGTTGTGACAATACAGCAGCCAGCTTCCTTTCAACATACGTCTGTCCAGAGCCCCAAACACTGGTGAGCCAAGCCCTGCATTGTACAGTGTCCGGCCTGCTGCTGCCCGAAGACATCTACTCTCTGCTGCAGGAACTGCAGCGGTTCTTTGACGAACCCAAAATCACGTCCTGGCTGTCACTGACTGTACACGGCTTCATGGACAGTCCCGTTTCCTGGGGAGATGCAGAACACGGGTTTCACAAGGGTGGTGAAAACTTCTACAACCTCGTCCTCTTCAAGAACCAGGACTACTGGTTGCACATGGGCACTGGCTCCCATGATAGATGTCCCCCATGATGACCACAaaacaaaagttttttttttgtttttttttcagcTTGGTTTTTTTAGGAAAATAAGGTATTGTGTACAAAACTGTTCACAAAATGTACTGCTTATCAATTGTGATGTTTCTAAAGAAATCTACTAATTTGCTCAGTCTTAATTTTTGTCTTTGCCATCTTCAATAAAAATAATTGAGTCCAACTGAAGTGCTCATA
>XM_021590060.2
TGACAAGCAAGCACGCTGGCTCTCTAGCCGGAAGTAGTTTACAAGTTCAGAGAGGAAGATACTGTATTTCACATGTTTGATTCACAAGTGTGTGTATAGCTAAATGTCTTTGGTTTAAATGTGTTTAGATTTGTTGTTTTTGATACAAGTCTAATACAATGTACCCGGAGCTAGACAAGTGTCCAAGAAGTTTACTTGTTTGCGAGAAATCGAACTTTGAGCATGAAAAGTCTAGACACGACACTCACGTGTCAAAACATTATTTTAACCACAAGGTGTCGGTTGTAATACCGGGATGTGGTGCCCTTTCTTCCCGGCTGGCCACTGTCATAAACAATTTCAGCAAGTATTTTCTGGTGAATAATTTACCAGTCTATGAGTTTTTGGATAAAGACTTCTTGAAGAATGTTGTGTGGGATGgcgctctctatGCTCTTTCCTACAAGACAAGCATTGACCAGGATAACACCATTGCACTTCTCCCTAGCGGTCAGCTGATCCTCTCTGTGGATAAGGACACGTATGAACAGCTGGGTGTGGAGGGAAAGCCGTCACAGTACAATCACAGACAGCCCATGAGATATGTCGTGACCATTGACCTGACGGACAAATCCATGGCGCCGGAAGGGAAGCGCTACCAGCGAGTTCTCTCCAGCCTTAAAGAAAGGGTGCCTCTGAAAAGCGACTTCCTGCTAGGACGGCACAATTCGGGGGCGGATGGGGATAGAGCGCTGCAGAGTCTCCTGTCCCGTTACCAGTGGAAAGAGCACAGACCAGTGGTCAGTAGCCACACCCTGAAGGATCTGCCATGTCCATCCCTGAACGCTTTGGACCTGCGCGGGGACCAGCGGTCTTGTGACCCCCACAGCTTCCTGGAGTGGCTTGGAGCAGTGAGCGCTGGTGTCAGTTGTGACAATACAGCAGCCAGCTTCCTTTCAACATACGTCTGTCCAGAGCCCCAAACACTGGTGAGCCAAGCCCTGCATTGTACAGTGTCCGGCCTGCTGCTGCCCGAAGACATCTACTCTCTGCTGCAGGAACTGCAGCGGTTCTTTGACGAACCCAAAATCACGTCCTGGCTGTCACTGACTGTACACGGCTTCATGGACAGTCCCGTTTCCTGGGGAGATGCAGAACACGGGTTTCACAAGGGTGGTGAAAACTTCTACAACCTCGTCCTCTTCAAGAACCAGGACTACTGGTTGCACATGGGCACTGGCTCCCATGATAGATGTCCCCCATGATGACCACAaaacaaaagttttttttttgtttttttttcagcTTGGTTTTTTTAGGAAAATAAGGTATTGTGTACAAAACTGTTCACAAAATGTACTGCTTATCAATTGTGATGTTTCTAAAGAAATCTACTAATTTGCTCAGTCTTAATTTTTGTCTTTGCCATCTTCAATAAAAATAATTGAGTCCAACTGAAGTGCTCATA

Function

symbol description
rpp40 Predicted to contribute to ribonuclease MRP activity and ribonuclease P activity. Predicted to be involved in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); endonucleolytic cleavage involved in tRNA processing; and tRNA 5'-leader removal. Predicted to be part of multimeric ribonuclease P complex and ribonuclease MRP complex. Orthologous to human RPP40 (ribonuclease P/MRP subunit p40).

NR:

description
ribonuclease P protein subunit p40 isoform X2

GO: NA

KEGG:

id description
K14530 RPP40; ribonucleases P/MRP protein subunit RPP40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590059.2 False 1456 mRNA 0.47 9 36002853 36013047
XM_021590060.2 True 1447 mRNA 0.47 8 36002853 36013047

Neighbor

gene id symbol gene type direction distance location
LOC110509091 LOC106597174 coding downstream 77070 35865848 ~ 35925783 (-)
LOC110509089 LOC106597148 coding downstream 160831 35833983 ~ 35842022 (-)
tfr1a LOC106597167 coding downstream 189406 35782149 ~ 35813447 (-)
LOC110508241 LOC106596996 coding downstream 222453 35663916 ~ 35780400 (-)
LOC110509088 LOC106597204 coding downstream 426872 35516740 ~ 35575981 (-)
lyrm4 lyrm4 coding upstream 3039 36005489 ~ 36017873 (-)
LOC118944844 riok1 coding upstream 10667 36023714 ~ 36025735 (-)
LOC110509099 LOC106597112 coding upstream 30994 36044041 ~ 36052176 (-)
LOC110509100 LOC106597103 coding upstream 40371 36053418 ~ 36064572 (-)
fastk LOC106597078 coding upstream 179722 36192769 ~ 36218674 (-)
G2132903 NA non-coding downstream 1180 36001304 ~ 36001673 (-)
G2132876 NA non-coding downstream 3959 35996867 ~ 35998894 (-)
G2132841 NA non-coding downstream 120732 35881833 ~ 35882121 (-)
G2132792 NA non-coding downstream 150419 35850482 ~ 35852434 (-)
G2132910 NA non-coding upstream 5886 36018933 ~ 36019457 (-)
G2132911 NA non-coding upstream 7091 36020138 ~ 36026003 (-)
G2132917 NA non-coding upstream 23612 36036659 ~ 36037337 (-)
G2132923 NA non-coding upstream 28487 36041534 ~ 36041826 (-)
G2131641 NA other downstream 1484724 34516522 ~ 34518129 (-)
G2131621 NA other downstream 1516677 34485869 ~ 34486176 (-)
G2130780 LOC106598333 other downstream 1934780 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 1936188 34040206 ~ 34066665 (-)
G2132971 NA other upstream 211166 36224213 ~ 36225379 (-)
G2132966 NA other upstream 222468 36235515 ~ 36249775 (-)
G2133007 NA other upstream 249955 36263002 ~ 36263330 (-)
LOC110509111 LOC106597319 other upstream 543453 36526794 ~ 36557532 (-)

Expression


Co-expression Network