lyrm4 (lyrm4)


Basic Information

Item Value
gene id lyrm4
gene name lyrm4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36005489 ~ 36017873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966844.1
CCAATGGggtttttgagaaggaggcgaagGAGTCAAGGAAACGCGATCATAGTGTTTACATGAACCAACATGGCGTCATGCAGCAGATCGCAGGTGATCTCCTTGTACAGGATGCTTATAAAAGAGAGCAAAAAATTCCCCTCTTACAATTACAGAACATATGCCCTGCGCAGGGTAAAGGATAGCTTCAGGGAGAATCTCCATGTTGACAACCCAAAAACTCTGGACATGCTGCTCAACCAGGCCAGAGAGAATCTTTCTGTCATCAAGAGACAGGTGTCCATTGGCCAGATGTACACTGCTCAGAGGACCATTGTGGAGGAAACTGGAGTGCACAGGGACCTCTGagtttgtagtagtggtggtggtggtggtgttgtgatTGTTGTTATCATAGGATGTCTTGGACCACATTTTGGACAGTTAAAGTCATGTTTTGCTATGGTAACAGCACTGAGGAAAGGCTTTAGTCCCAGAAAGCACTTACACCAGACAACATTTCTCTCTGATGTATTGAAATGTATGATCTCTTTTTAAAACTCTTTACTCATGTTATCATTTATATGTATTTGTAACAGCTTGTAAGTGATATGTAATACCCTTTTGTTGCAATGACTGCAGCATCTCAATTAAACAGTAATATGTGCAGTA
>TU2438804
CGCGATCATAGTGTTTACATGAACCAACATGGCGTCATGCAGCAGATCGCAGGTGATCTCCTTGTACAGGATGCTTATAAAAGAGAGCAAAAAATTCCCCTCTTACAATTACAGAACATATGCCCTGCGCAGGGTAAAGGATAGCTTCAGGGAGAATCTCCATGTTGACAACCCAAAAACTCTGGACATGCTGCTCAACCAGGCCAGAGAGAATCTTTCTGTCATCAAGAGACAGGTGTCCATTGGCCAGATGTACACTGCTCAGAGGACCATTGTGGAGGAAACTGGAGTGCACAGGGACCTCTGagtttgtagtagtggtggtggtggtggtgttgtgatTGTTGTTATCATAGGATGTCTTGGACCACATTTTGGACAGTTAAAGTCATGTTTTGCTATGGTAACAGCACTGAGGAAAGGCTTTAGTCCCAGAAAGCACTTACACCAGACAACATTTCTCTCTGATGTATTGAAATGTATGATCTCTTTTTAAAACTCTTTACTCATGTTATCATTTATATGTATTTGTAACAGCTTGTAAGTGATATGTAATACCCTTTTGTTGCAATGACTGCAGCATCTCAATTAAACAGTAATATGTGCAatatgtgaaaaa
>TU2438803
CGCGATCATAGTGTTTACATGAACCAACATGGCGTCATGCAGCAGATCGCAGGTGATCTCCTTGTACAGGATGCTTATAAAAGAGAGCAAAAAATTCCCCTCTTACAATTACAGAACATATGCCCTGCGCAGGGTAAAGGATAGCTTCAGGGAGAATCTCCATGTTGACAACCCAAAAACTCTGGACATGCTGCTCAACCAGGCCAGAGAGAATCTTTCTGTCATCAAGAGACAGGTGTCCATTGGCCAGATGTACACTGCTCAGAGGACCATTGTGGAGGAAACTGGAGTGCACAGGGACCTCTGagtttgtagtagtggtggtggtggtggtgttgtgatTGTTGTTATCATAGGATGTCTTGGACCACATTTTGGACAGTTAAAGTCATGTTTTGCTATGGTAACAGCACTGAGGAAAGGCTTTAGTCCCAGAAAGCACTTACACCAGACAACATTTCTCTCTGATGTATTGAAATGTATGATCTCTTTTTAAAACTCTTTACTCATGTTATCATTTATATGTATTTGTAACAGCTTGTAAGTGATATGTAATACCCTTTTGTTGCAATGACTGCAGCATCTCAATTAAACAGTAATATGTGCAGTATGTGGTTTTAGAGTTTGGCTGGAT

Function

symbol description
lyrm4 Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 19. Orthologous to human LYRM4 (LYR motif containing 4).

NR:

description
LYR motif-containing protein 4A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966844.1 False 651 mRNA 0.42 3 36016086 36017873
TU2438804 False 619 TUCP 0.41 4 36005489 36017832
TU2438803 True 634 TUCP 0.42 3 36016062 36017832

Neighbor

gene id symbol gene type direction distance location
rpp40 rpp40 coding downstream 3039 36002853 ~ 36013047 (-)
LOC110509091 LOC106597174 coding downstream 90303 35865848 ~ 35925783 (-)
LOC110509089 LOC106597148 coding downstream 174064 35833983 ~ 35842022 (-)
tfr1a LOC106597167 coding downstream 202639 35782149 ~ 35813447 (-)
LOC110508241 LOC106596996 coding downstream 235686 35663916 ~ 35780400 (-)
LOC118944844 riok1 coding upstream 5841 36023714 ~ 36025735 (-)
LOC110509099 LOC106597112 coding upstream 26168 36044041 ~ 36052176 (-)
LOC110509100 LOC106597103 coding upstream 35545 36053418 ~ 36064572 (-)
fastk LOC106597078 coding upstream 174896 36192769 ~ 36218674 (-)
LOC118944824 NA coding upstream 212182 36230055 ~ 36232160 (-)
G2132903 NA non-coding downstream 14413 36001304 ~ 36001673 (-)
G2132876 NA non-coding downstream 17192 35996867 ~ 35998894 (-)
G2132841 NA non-coding downstream 133965 35881833 ~ 35882121 (-)
G2132792 NA non-coding downstream 163652 35850482 ~ 35852434 (-)
G2132910 NA non-coding upstream 1060 36018933 ~ 36019457 (-)
G2132911 NA non-coding upstream 2265 36020138 ~ 36026003 (-)
G2132917 NA non-coding upstream 18786 36036659 ~ 36037337 (-)
G2132923 NA non-coding upstream 23661 36041534 ~ 36041826 (-)
G2131641 NA other downstream 1497957 34516522 ~ 34518129 (-)
G2131621 NA other downstream 1529910 34485869 ~ 34486176 (-)
G2130780 LOC106598333 other downstream 1948013 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 1949421 34040206 ~ 34066665 (-)
G2132971 NA other upstream 206340 36224213 ~ 36225379 (-)
G2132966 NA other upstream 217642 36235515 ~ 36249775 (-)
G2133007 NA other upstream 245129 36263002 ~ 36263330 (-)
LOC110509111 LOC106597319 other upstream 538627 36526794 ~ 36557532 (-)
LOC110509088 LOC106597204 coding downstream 429508 35516740 ~ 35575981 (-)
LOC110509052 LOC106598333 other downstream 1947219 34038788 ~ 34058344 (-)

Expression


Co-expression Network