LOC118944844 (riok1)


Basic Information

Item Value
gene id LOC118944844
gene name riok1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36023714 ~ 36025735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966480.1
CGTGTCCTGTGCTTACTCAAGTGTTAGCTCGTATCCAAAAGGCCGGCAGATGGCGATATTGTTGTACGCAGCCTTGTTTATACATTCATATCCACCGGTGGACCGGTTCGTACATAACATTCTCCATTCAGGTTACAAATTGCGTTGATTTCCTCCCTAACTCAATTTAATGGCGAGAAAACTGGGAAAATATGTATACTTTCCATATGAAACACAATTTCACACAATCATGCGCCAGAATATCGCCATCTGCCGGTCTTTAGGCTGGCTAGCTAGTATGAAACGTTATCTATAAAACAAGGTAGCCCATGTCTCTTTACATTGCATTTAGCATTGCAAATCTAGCAGAGATTATTCAAGGAACGTATGTAATGACTCAAGACAAACAGCACACTGCATGTCATGTATTGCCCCTCTCCCTTTGttcatgtagctagctaagtcaattatttgttttctttctGTCAGTGTTTCAATGTACAGAGCCTGACCACTAGCTATGTTTCTTTTAAATAGTGTTGCCATCACCCAACCAGCTGAGGAGATGCTTGCAATAGAGGGCCAGGTCAGTGACGTTAGTCTGGAAACACCATATCATGATTTGTGTGAATatggtgatgatgaggaggaggaggaggaagaagaggatgatgatgattGGGACTGGAATGAGACTGGGGACTTGACAAAACGCTACATGGCTAATAGAACAGGAATGAATCACCAGgCAAATAAACAAAATCTTAGTAACAAATCACAGAAACTGTCAACCCCAACTGACAAGGCTCTGAGGAAGTTTGAACACAAAATTAATTTAGATAAGCTCAACTATGCTGACTCTGTGATCAACAAAGTGACCGTGATGCAGAAACAACAAAATGCTGACACGTTTCGAGTGAAAGACAAATCTGATCGGGCTACAGTTGAGCAGGTGTGCTTTTAAAAATAGTTTTATTCCCGTTGGAGTTTtatagtgtatatgtgtgtttttttttgataat
>TU2438846
gaggaagaagaggatgatgatgattGGGACTGGAATGAGACTGGGGACTTGACAAAACGCTACATGGCTAATAGAACAGGAATGAATCACCAGgCAAATAAACAAAATCTTAGTAACAAATCACAGAAACTGTCAACCCCAACTGACAAGGCTCTGAGGAAGTTTGAACACAAAATTAATTTAGATAAGCTCAACTATGCTGACTCTGTGATCAACAAAGTGACCGTGATGCAGAAACAACAAAATGCTGACACGTTTCGAGTGAAAGACAAATCTGATCGGGCTACAGTTGAGCAGGTGT
>TU2438849
AGCTGAGGAGATGCTTGCAATAGAGGGCCAGGTCAGTGACGTTAGTCTGGAAACACCATATCATGATTTGTGTGAATatggtgatgatgaggaggaggaggaggaagaagaggatgatgatgattGGGACTGGAATGAGACTGGGGACTTGACAAAACGCTACATGGCTAATAGAACAGGAATGAATCACCAGgCAAATAAACAAAATCTTAGTAACAAATCACAGAAACTGTCAACCCCAACTGACAAGGCTCTGAGGAAGTTTGAACACAAAATTAATTTAGATAAGCTCAACTATGCTGACTCTGTGATCAACAAAGTGACCGTGATGCAGAAACAACAAAATGCTGACACGTTTCGAGTGAAAGACAAATCTGATCGGGCTACAGTTGAGCAGGTGT
>TU2438845
gaggaagaagaggatgatgatgattGGGACTGGAATGAGACTGGGGACTTGACAAAACGCTACATGGCTAATAGAACAGGAATGAATCACCAGgCAAATAAACAAAATCTTAGTAACAAATCACAGAAACTGTCAACCCCAACTGACAAGGCTCTGAGGAAGTTTGAACACAAAATTAATTTAGATAAGCTCAACTATGCTGACTCTGTGATCAACAAAGTGACCGTGATGCAGAAACAACAAAATGCTGACACGTTTCGAGTGAAAGACAAATCTGATCGGGCTACAGTT
>TU2438850
AGCTGAGGAGATGCTTGCAATAGAGGGCCAGGTCAGTGACGTTAGTCTGGAAACACCATATCATGATTTGTGTGAATatggtgatgatgaggaggaggaggaggaagaagaggatgatgatgattGGGACTGGAATGAGACTGGGGACTTGACAAAACGCTACATGGCTAATAGAACAGGAATGAATCACCAGgCAAATAAACAAAATCTTAGTAACAAATCACAGAAACTGTCAACCCCAACTGACAAGGCTCTGAGGAAGTTTGAACACAAAATTAATTTAGATAAGCTCAACTATGCTGACTCTGTGATCAACAAAGTGACCGTGATGCAGAAACAACAAAATGCTGACACGTTTCGAGTGAAAGACAAATCTGATCGGGCTACAGTT

Function

symbol description
riok1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within phosphorylation and ribosome biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytosol. Orthologous to human RIOK1 (RIO kinase 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966480.1 False 1001 mRNA 0.41 4 36023714 36025735
TU2438846 False 301 lncRNA 0.41 4 36023780 36025101
TU2438849 False 401 TUCP 0.43 4 36023780 36025201
TU2438845 False 291 lncRNA 0.41 4 36023790 36025101
TU2438850 True 391 TUCP 0.42 4 36023790 36025201

Neighbor

gene id symbol gene type direction distance location
lyrm4 lyrm4 coding downstream 5841 36005489 ~ 36017873 (-)
rpp40 rpp40 coding downstream 10667 36002853 ~ 36013047 (-)
LOC110509091 LOC106597174 coding downstream 97931 35865848 ~ 35925783 (-)
LOC110509089 LOC106597148 coding downstream 181692 35833983 ~ 35842022 (-)
tfr1a LOC106597167 coding downstream 210267 35782149 ~ 35813447 (-)
LOC110509099 LOC106597112 coding upstream 18306 36044041 ~ 36052176 (-)
LOC110509100 LOC106597103 coding upstream 27683 36053418 ~ 36064572 (-)
fastk LOC106597078 coding upstream 167034 36192769 ~ 36218674 (-)
LOC118944824 NA coding upstream 204320 36230055 ~ 36232160 (-)
LOC118936612 NA coding upstream 209763 36235498 ~ 36240339 (-)
G2132910 NA non-coding downstream 4257 36018933 ~ 36019457 (-)
G2132903 NA non-coding downstream 22041 36001304 ~ 36001673 (-)
G2132876 NA non-coding downstream 24820 35996867 ~ 35998894 (-)
G2132841 NA non-coding downstream 141593 35881833 ~ 35882121 (-)
G2132917 NA non-coding upstream 10924 36036659 ~ 36037337 (-)
G2132923 NA non-coding upstream 15799 36041534 ~ 36041826 (-)
G2132934 NA non-coding upstream 51741 36077476 ~ 36077703 (-)
G2132992 NA non-coding upstream 131493 36157228 ~ 36158288 (-)
G2132969 NA non-coding upstream 171114 36196849 ~ 36197432 (-)
G2131641 NA other downstream 1505585 34516522 ~ 34518129 (-)
G2131621 NA other downstream 1537538 34485869 ~ 34486176 (-)
G2130780 LOC106598333 other downstream 1955641 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 1957049 34040206 ~ 34066665 (-)
G2132971 NA other upstream 198478 36224213 ~ 36225379 (-)
G2132966 NA other upstream 209780 36235515 ~ 36249775 (-)
G2133007 NA other upstream 237267 36263002 ~ 36263330 (-)
LOC110509111 LOC106597319 other upstream 530765 36526794 ~ 36557532 (-)
LOC110509127 LOC106596915 other upstream 1740983 37766370 ~ 37996222 (-)

Expression


Co-expression Network