riok1 (riok1)


Basic Information

Item Value
gene id riok1
gene name riok1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36028547 ~ 36039262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966583.1
cgCTGTTAAACCTCGtcgaagaagaagaaaaatagaAGGAAGTGTGTAGAAACAGACGAGCTTCTTACACGAGTTGTAACTCACATTGGAGTGAAATACAGAATTGAAATGTCCATGGCCCAGATTGTACCAGGACAGTTTGATGATGCGGACGAATCAAACAGTGTTGCCATCACCCAACCAGCTGAGGAGATGCTTGCAATAGAGGGCCAGGTCAGTGACGTTAGTCTGGAAACACCATATCATGATTTGTGTGAATatggtgatgatgaggaggaggaggaggaggaagaagaggatgatgatgattGGGACTGGAATGAGACTGGGGACTTGACAAAACGCTACATGGCTAATAGAACAGGAATGAATCACCAGgCAAATAAACAAAATCTTAGTAACAAATCACAGAAACTGTCAACCCCAACTGACAAGGCTCTGAGGAAGTTTGAACACAAAATTAATTTAGATAAGCTCAACTATGCTGACTCTGTGATCAACAAAGTGACCGTGATGCAGAAACAACAAAATGCTGACACGTTTCGAGTGAAAGACAAATCTGATCGGGCTACAGTTGAGCAGGTGTTGGACCCGCGGACGCGAATGATTCTGTTTAAGATGCTCAGCAGGGGTGTCATTTCAGAGATCAATGGATGTATCAGCACAGGCAAAGAGGCAAATGTTTACCACGCAACCACTGCCAATGGTGAGAGCAGAGCCATCAAGATCTACAAGACCTCCATCTTACTGTTCAAGGACCGTGACAAATATGTTAGTGGAGAATTCAGGTTCCGCCATGGCTACTGTAAAGGAAACCCCAGGAAGATGGTGCGAACCTGGGCCGAGAAGGAGATGAGAAACCTCATCAGGTTGCAGACGGCAGGCATCCCGAGTCCGGAGCCAATCATGCTGCGTAGCCACGTGCTCCTCATGAGTTTCATCGGCAAGGATGACATGCCTGCTCCTCTGTTGAAGAACGCTTCCCTGTCCGAGTCCAAAGCACGCGAGCTGTATCTCCAGGTGATACACAACATGAGGGTTATGTACCAGGAGGCCCGGCTGGTCCATTCAGACCTCAGTGAGTTCAACATGCTGTACAACGACGGTGACGCCTACATCATCGACGTGTCCCAGTCTGTGGAGCACGACCACCCCCACGCTCTCGAGTTCCTGCGCAAAGACTGTACCAATGTCAATGACTTTTTCCTGAAGAGAGGGGTAGCGGCGATGACTTTGCGCGAGCTCTTTGAGTTCGTCACCGATCCCTCCATCACCAGCAGCAACATCAACCTCTACTTGGAAAAGGCGATGGACATTGCTTCCGAGAGGACGGCAGAGGAGAGGTCCAATCAGGATAGTGTGAATGAGGAGGTGTTTAAGAACGCGTACATCCCACGCACACTTACAGAAGTGAGCCACTACGAACGTGACGTGGACGCCATGACAAACATGAAAGACGACGAGTCCTCGCACAACATGCAGAATGACAACATCCTCTACCAGACAGTGACGGGCCTGAAGAAGGATCTGTCTGGAGTTCAGACAGTACCTGCCCTGCTCCAGGACTGTGATGTAGAGGAGAGCTCAAGTTCAGAGGATGAAGATGAAGATGAGGATGGTGGCAAACAGGAGTCTGTGGGAGAGGAGTCTCAGATTGACAAGAAGGAGATGAAGAAACTGGCCAAGGAGGCCCAGAGGGAAAAGAGAAAAAACAAAACACCGAAACACgtgaagaagagaaaggagagggttTCAAAGATGAAGAAAGGCAAATGAGTGGACCCAGTAATCAAGAATACACCAGACCTAAACATGAACTTTTATCCCAGTGACTTCATGAACTGATGTAAACCTCCGTGCTCAACACACACAGGCCTTCAGTAACACTGTAGTGAAACTGGTGAACAGTTGTGCAGTATTAGGCCACACTAACAGACAGTGAAAAAATATGACATGTTTATTATATAAGAAGTATGTGGGCAAAATATTGTTGACCATGTCAGGTGTTATGCACAATGCTTTAGTGTTTTATGATAATCGCTATAGAAAAGCAGTtcaattaaatgtaaaaaaaaatatctaaatgaAGTTGTACTTTACCTTGAAACATTTTACCAACGAGGTTTCAAGGCTCTTCTATGTACAGTTACTGCAACAGTTTGCAGGGCAGGTGCTCCTAATGGTCTGTACTAAAAGCTAGTCATTTAGAAGCCAAAATAACCACATGAAAATTGTGGCTTGCAGCCAGCCAGTCCTCACATTGTATAGGGATGGAAATAATTAAACATTATTTACCATGAAATACTT

Function

symbol description
riok1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within phosphorylation and ribosome biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytosol. Orthologous to human RIOK1 (RIO kinase 1).

NR:

description
serine/threonine-protein kinase RIO1

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K07178 RIOK1; RIO kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966583.1 True 2307 mRNA 0.46 17 36028547 36039262

Neighbor

gene id symbol gene type direction distance location
LOC110509094 LOC106597143 coding upstream 29724 35985515 ~ 35998946 (+)
LOC110508289 LOC106597230 coding upstream 53416 35973386 ~ 35975132 (+)
LOC110509092 LOC106597187 coding upstream 164474 35852550 ~ 35864073 (+)
LOC110509087 LOC106588083 coding upstream 643622 35372225 ~ 35384925 (+)
trnak-uuu-285 NA coding upstream 661611 35366864 ~ 35366936 (+)
LOC110509101 LOC106597086 coding downstream 69364 36108626 ~ 36178080 (+)
ubtfl ubf1 coding downstream 139504 36178766 ~ 36197438 (+)
LOC118944825 NA coding downstream 205755 36230059 ~ 36255133 (+)
afg3l2 afg3l2 coding downstream 274470 36313732 ~ 36337479 (+)
zgc:136930 LOC106597301 coding downstream 434870 36474132 ~ 36481583 (+)
G2132472 NA non-coding upstream 8945 36019372 ~ 36019602 (+)
G2132469 NA non-coding upstream 12616 36013356 ~ 36015931 (+)
G2132466 rpp40 non-coding upstream 18331 36009488 ~ 36010216 (+)
G2132461 NA non-coding upstream 25828 36001248 ~ 36002719 (+)
G2132460 NA non-coding upstream 27568 35999353 ~ 36000979 (+)
G2132483 NA non-coding downstream 4318 36043580 ~ 36043818 (+)
G2132484 LOC106597112 non-coding downstream 4804 36044066 ~ 36045369 (+)
G2132485 NA non-coding downstream 12547 36051809 ~ 36052544 (+)
G2132491 NA non-coding downstream 23456 36062718 ~ 36063177 (+)
G2132496 NA non-coding downstream 30561 36069823 ~ 36070106 (+)
G2132291 NA other upstream 328312 35699846 ~ 35700235 (+)
G2131933 NA other upstream 935513 35091699 ~ 35093034 (+)
G2131426 NA other upstream 1245129 34702206 ~ 34783418 (+)
G2131416 NA other upstream 1340907 34687271 ~ 34687640 (+)
G2132519 LOC100380659 other downstream 299832 36339094 ~ 36364994 (+)
G2132611 LOC100380659 other downstream 326294 36365556 ~ 36369967 (+)
LOC110509112 LOC106597339 other downstream 483492 36522754 ~ 36528580 (+)
G2133551 NA other downstream 999391 37038653 ~ 37038924 (+)
G2134356 NA other downstream 1929841 37969103 ~ 37969465 (+)

Expression


Co-expression Network