Gene
RNA
| Item | Value |
|---|---|
| gene id | riok1 |
| gene name | riok1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 36028547 ~ 36039262 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| riok1 | Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to act upstream of or within phosphorylation and ribosome biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytosol. Orthologous to human RIOK1 (RIO kinase 1). |
| description |
|---|
| serine/threonine-protein kinase RIO1 |
| id | name | namespace |
|---|---|---|
| GO:0016310 | phosphorylation | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| id | description |
|---|---|
| K07178 | RIOK1; RIO kinase 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036966583.1 | True | 2307 | mRNA | 0.46 | 17 | 36028547 | 36039262 |
36,026,000
36,028,000
36,030,000
36,032,000
36,034,000
36,036,000
36,038,000
36,038,000
36,040,000
36,042,000
36,044,000
36,046,000
36,048,000
36,050,000
NC_048592.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110509094 | LOC106597143 | coding | upstream | 29724 | 35985515 ~ 35998946 (+) |
| LOC110508289 | LOC106597230 | coding | upstream | 53416 | 35973386 ~ 35975132 (+) |
| LOC110509092 | LOC106597187 | coding | upstream | 164474 | 35852550 ~ 35864073 (+) |
| LOC110509087 | LOC106588083 | coding | upstream | 643622 | 35372225 ~ 35384925 (+) |
| trnak-uuu-285 | NA | coding | upstream | 661611 | 35366864 ~ 35366936 (+) |
| LOC110509101 | LOC106597086 | coding | downstream | 69364 | 36108626 ~ 36178080 (+) |
| ubtfl | ubf1 | coding | downstream | 139504 | 36178766 ~ 36197438 (+) |
| LOC118944825 | NA | coding | downstream | 205755 | 36230059 ~ 36255133 (+) |
| afg3l2 | afg3l2 | coding | downstream | 274470 | 36313732 ~ 36337479 (+) |
| zgc:136930 | LOC106597301 | coding | downstream | 434870 | 36474132 ~ 36481583 (+) |
| G2132472 | NA | non-coding | upstream | 8945 | 36019372 ~ 36019602 (+) |
| G2132469 | NA | non-coding | upstream | 12616 | 36013356 ~ 36015931 (+) |
| G2132466 | rpp40 | non-coding | upstream | 18331 | 36009488 ~ 36010216 (+) |
| G2132461 | NA | non-coding | upstream | 25828 | 36001248 ~ 36002719 (+) |
| G2132460 | NA | non-coding | upstream | 27568 | 35999353 ~ 36000979 (+) |
| G2132483 | NA | non-coding | downstream | 4318 | 36043580 ~ 36043818 (+) |
| G2132484 | LOC106597112 | non-coding | downstream | 4804 | 36044066 ~ 36045369 (+) |
| G2132485 | NA | non-coding | downstream | 12547 | 36051809 ~ 36052544 (+) |
| G2132491 | NA | non-coding | downstream | 23456 | 36062718 ~ 36063177 (+) |
| G2132496 | NA | non-coding | downstream | 30561 | 36069823 ~ 36070106 (+) |
| G2132291 | NA | other | upstream | 328312 | 35699846 ~ 35700235 (+) |
| G2131933 | NA | other | upstream | 935513 | 35091699 ~ 35093034 (+) |
| G2131426 | NA | other | upstream | 1245129 | 34702206 ~ 34783418 (+) |
| G2131416 | NA | other | upstream | 1340907 | 34687271 ~ 34687640 (+) |
| G2132519 | LOC100380659 | other | downstream | 299832 | 36339094 ~ 36364994 (+) |
| G2132611 | LOC100380659 | other | downstream | 326294 | 36365556 ~ 36369967 (+) |
| LOC110509112 | LOC106597339 | other | downstream | 483492 | 36522754 ~ 36528580 (+) |
| G2133551 | NA | other | downstream | 999391 | 37038653 ~ 37038924 (+) |
| G2134356 | NA | other | downstream | 1929841 | 37969103 ~ 37969465 (+) |
