LOC110509100 (LOC106597103)


Basic Information

Item Value
gene id LOC110509100
gene name LOC106597103
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36053418 ~ 36064572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590064.2
TGCACTGATGGAGCGGAAATCACAGAAGAAAGCTTTGTTAGTTGCAGCAGCAGAAATATTGGGGTGTGAGAGATTTTAGTGCAGAACATCTACAGGGACTTTTGAGAAAAGGAATCCCAAAGTAGTTGGATGATGGGGTTAGATGTGCAATTTAAGATTTTCCCCATTTTTGTGACCAAATACTTCATCCGTACTCCAACCAACGAAAGGCAGCACCGGGTCTAAATCTGCCGGAAAAATCACACAAAGAAGAAGACAAACACAGGATTGTGGGAAATTTCGCACCTTGCGAAATGTAGGCTACATGCACAATTTGAAAGGATTATTACATATTTATCGACTTTCATTTCGATCAAAATGTCTAAACTGCAGTTGTTCAATGCGTATCTGACTGAACGATTAACAGCAGCTGCTGCAGAGATATCAGTGGCAGTAGAGAGAACGATAACAGATTACCAGGAAGAGAACGAACGTCTGCGACGACTACTTGATTTGTTAACCAAACCAAAGTTTCATAGAGCAGACCCCCAGCAACTCACGCTCCTTGTATCTGAAGAGGAGGAACACTGTGAGCAGGAGTGGAGCCCAAGTCTGGGGCAGGAGGACCCGGAGGACCCAGAGCCCCCACACATTAAAGAGGAACACGAGGAGTTCAGGACCagtcaggaggaagagcagcttcaaGGGCTGGTTTCTGACACGAAAGACTCAACATTCACTCCTGCTTGTGTGAAAAGTGACTGCAATGATCAGGGCCCACCTCAGCTCCCACATCTTTACCAAACTCAAACTGTGGAGAACAAGGAGAAGCACTCTATACCCACCAACACAATTGAAGAGATCAAAACAGAACCTAATGGACAGGACTATGGAGTACCAGAACCAACTAGTGACTCTCATCCCCTCTGTCAAGTAAATCCTGGTTGTTCTGCAGCTCAGAGTGAAGCCAATGACAATGGGATGGAAAGTGGAGAAACACTGCCAGGATCTACACTACTCGAATCAACTAGAACATGGGTAAAACAAGGACAAAGCTCCCATACTAGTACTGATGACAAGACAGCCAAACAGTTGCCCCAATTTAAATCCCCCAGTCAAAGAAATTCTGTTCCTTTTTCATGCAAGGTGTGTGGAGAGACTTTTGTTTTCATGGGCCATTTCGTCCATCATGTGcgagaaacacacacaaagaacCAAGACtacatgtgtggtgtgtgtggagaAGACTTTGAGTCCACAGAATGTATGATCGATCACCTGCAAACCCACACTACAGAAATATATTATTGTGATGTTTGTAGCAAACGTTTCTCCTTTGAGTCTCATCTGAAACAACATATGTTGGTTCACACTGGGGAGAGGCAGTATCAatgcaaagaatgtggcaaatGCTTCATTCATAGTGGACAGCTGAATACGCATATGAAGATTCACACACGGGAGAAATTGTATCAGTGCAAAGAATGTGAAAAATGTTTCCCCAGTAAGCATAACTTGGACAGACATATGGTGATTCACATATATTCTAATCTGAAAATGCACaagactcacacaggagagaaacgaTATCAGTGCAAAGAATGTGGGAAATGCTTCCTTCATAAGGGACACCTGAATACCCATCTaagaattcacacaggagagaaaccataccAATGCAACGAATGTGAGAAATGTTTTGGCCGGAAGGAAAACCTAACCGCACATATGAGggttcacacaggggagaaaccgtaCAAGTGCCCAGTGTGTGGAAAATGCTATAGCACTGCACAAGTTCTAAAATTGCATCAACTTCAAAGTCACtatctaggtttccatccaattggtgatgGATTTTCATGCGAATAGTCCATATAGAAAGAACATGGCCATTTTATCATCTGGGGTGTGTTTCCAACAAACTGAATTTTTAGGAGATAAAATGCTGTGTGTGATGTAGTTAACTTAAGCGCAAAAGTGCTTTTATGTTTTCATATACCAAATAAATGTTCCCATTGCATTTTCAATTCTACAAATGGTTTTGTCACACACTGTTTGCGATAAATGGTATTACTTGCCCAATCTGGTTTTGGCACATGCTCTATAAACAACAAGTCTGCTGATAAAGTGGACGAGGTAGGTTATATGATGAGATATGGATAAAATCAATagcctttttaaaaatgtgttataattagcAGCTATCAAGTCACCAGCATCATTGGACATGTGCATGAaactcatcaccgtgcacttaaCCACCATAACTTATTCGCTTTTTTCCATGTCGCGGTAGTAGGCTACAACGTCATTGTGTGACTCGGAAGTTTAATGCGCGACATGGTGTTTTTTTCACCGCAATTGTTGCGTGATCTATTTTAATCGACCCACCAAAAAATATCCCACCGTGTCTAGCGTATTTAGTTTAGTTGACATTAGGAAGTTTTACAGACACATTAGCGGTTTTCAAAAGGCCTGTCGTgactttaatttattttattttatgcgtcaggtcattgtcctgtagaTCACTTCATTATtcctttttgtttacaaagctctACTGTACGAGTTTCTGATTTATCCAACTTTTCGgtttaaaatataaaaacatgaGAAACCAAACCTGTTCACAaggttggttaactcttgaggttcctCGAGTCGCCACCGAACTAGGTGAATACGCTTTTAGTTATAAAGCACCTCGTTGCTGGAACCAACTACAAAATACATTacaattggatgttctggtgccaCTTATTGAggaatgtaatgttttttttattgaatatttGTGTTGTGCTGTATTTTACTGGTTTTATATTGTATTTGATTTGTCTTATAAATTGTATATGCAGGGCTCCCTTTGGAAAAaagaccctggtctcaatggtgactccctgcttaaataaaggtaaataagaTTAATCTGCA

Function

NR:

description
zinc finger protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590064.2 True 2919 mRNA 0.41 2 36053418 36064572

Neighbor

gene id symbol gene type direction distance location
LOC110509099 LOC106597112 coding downstream 1242 36044041 ~ 36052176 (-)
LOC118944844 riok1 coding downstream 27683 36023714 ~ 36025735 (-)
lyrm4 lyrm4 coding downstream 35545 36005489 ~ 36017873 (-)
rpp40 rpp40 coding downstream 40371 36002853 ~ 36013047 (-)
LOC110509091 LOC106597174 coding downstream 127635 35865848 ~ 35925783 (-)
fastk LOC106597078 coding upstream 128197 36192769 ~ 36218674 (-)
LOC118944824 NA coding upstream 165483 36230055 ~ 36232160 (-)
LOC118936612 NA coding upstream 170926 36235498 ~ 36240339 (-)
LOC110509104 NA coding upstream 179089 36243661 ~ 36245981 (-)
LOC110508243 LOC100380659 coding upstream 274513 36339085 ~ 36391023 (-)
G2132923 NA non-coding downstream 11592 36041534 ~ 36041826 (-)
G2132917 NA non-coding downstream 16081 36036659 ~ 36037337 (-)
G2132911 NA non-coding downstream 27415 36020138 ~ 36026003 (-)
G2132910 NA non-coding downstream 33961 36018933 ~ 36019457 (-)
G2132934 NA non-coding upstream 12904 36077476 ~ 36077703 (-)
G2132992 NA non-coding upstream 92656 36157228 ~ 36158288 (-)
G2132969 NA non-coding upstream 132277 36196849 ~ 36197432 (-)
G2132978 NA non-coding upstream 169896 36234468 ~ 36243185 (-)
G2133005 NA non-coding upstream 185804 36250376 ~ 36255942 (-)
G2131641 NA other downstream 1535289 34516522 ~ 34518129 (-)
G2131621 NA other downstream 1567242 34485869 ~ 34486176 (-)
LOC110509052 LOC106598333 other downstream 1995148 34038788 ~ 34058344 (-)
G2132971 NA other upstream 159641 36224213 ~ 36225379 (-)
G2132966 NA other upstream 170943 36235515 ~ 36249775 (-)
G2133007 NA other upstream 198430 36263002 ~ 36263330 (-)
LOC110509111 LOC106597319 other upstream 491928 36526794 ~ 36557532 (-)
LOC110509127 LOC106596915 other upstream 1702146 37766370 ~ 37996222 (-)

Expression


Co-expression Network