LOC118936612



Basic Information


Item Value
gene id LOC118936612
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36235498 ~ 36240339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036966202.1
CATTTATACCTATTAGCATTGTGTCTAACTGTCCAGTGTTGAGATGGAGATGAGTGGCCTCCTGAGTGTTCTGCTGGTCACATCAGCAGCCTTGCTGTTTATAGCTAACGGACAGAGCAACTATGATATGTTGACGGAGGTTGACAAGAAACATGTTGACATGGCTATAAGATATGCAAATAAGAATAGTGAGATTCAGAAAAATAATCCAAAAGAGCACCTCAATTTTTTACAAGTTATTGGACAATCTGAGATCAATGCTCGGGAATTTAACATCAACTTGTTGTTGAAAGCAACAGACTGCCCTAAGGCCAGTAGTGATAGTGAACATAAACATCGCCCTGAATGTAGCTTTAAATCCAGAAGGCCCTATATAAACTGTGTTGTTTGCAGCAAAGACTTCCATGACAGCACTGACCCCTACATTGACTGTGTTCTCCACAAAGATGTGAAGAAGCAAGATGACGTCCGATATGACAAGTGTTCATCTCTTCTTCATGGAGGGCTTACAACTTTAGCCTTACATGCCGAAGAAGACCTTCAGACTGGATGCCTCGGCTGTTTCTGATAACTAATGAAAGAACGTGTCCAGCACTGATGGTCAGAGGCCGTCCTTTATAAAGCACTTCTGTCTTTGGATTTATAATGTAGCCTTTTGGGAGCTTCGGTTGGAATTGAACACAATGCAATTGTCTCAAAATTACTCTTTCCTCAGTTTTGAATCTCTCGTAATACACAGATAAATATTGTAAATGTACCCTTCTTTGCTGATTCTCCACATATATTCAAAGAAATTGAGAGCAGTCTGCTACTTAAGATTCACATGGATTACCCCGCTGcttatttcaaaataatattaCTGTTGAAAGTAAAGCTTACTCTAACTTAACCAGTATGAGGGGTGAGAAATGAAATAAGGATGTTATTGGTTTCTTTTTTTCTGAATCTTAAAATTTGTTTTACAATTTTGGGAAGAAAATTGTCTGTATGTCTGCATATGTCTTGCAGTGTAAAATGATTGCAGCTCTGTTTCTACTTCTCTCAGGGCAGAGTGCCCACAGTCTtatctctgggcagccaggtctgCCTGTGACCGCAGATCACTACTAGATTTTTATAGGTAACATAATGAACTTAGGTCTGGTCCCTATGGCCAGGCTGTGTTCACGGAGTCTGCACATTGTCAATTCAGAATTTTCCTTAGTCACTGTGAACATATGTCTGTAGACCAAACAGCATTAAAGTTTGCTGTGGGTTTTGTCTTTCTAAAAggtgatattttttattttagattcGATGACGGTTTGGTTGGTTAACAACAACCGGAACTTGGCTTAGATTGTTGTCGGACTttaatcaaatattattttaaggggtggatcagctgTATTGCAGAAATAAATTCATtgcaaatcctacaatgtgattttctgga
>XM_036966200.1
TATACCTATTAGCATTGTGTCTAACTGTCCAGTGTTGAGATGGAGATGAGTGGCCTCCTGAGTGTTCTGCTGGTCACATCAGCAGCCTTGCTGTTTATAGCTAACGGACAGAGCAACTATGATATGTTGACGGAGGTTGACAAGAAACATGTTGACATGGCTATAAGATATGCAAATAAGAATAGTGAGATTCAGAAAAATAATCCAAAAGAGCACCTCAATTTTTTACAAGTTATTGGACAATCTGAGATCAATGCTCGGGAATTTAACATCAACTTGTTGTTGAAAGCAACAGACTGCCCTAAGGCCAGTAGTGATAGTGAACATAAACATCGCCCTGAATGTAGCTTTAAATCCAGAAGGCCCTATATAAACTGTGTTGTTTGCAGCAAAGACTTCCATGACAGCACTGACCCCTACATTGACTGTGTTCTCCACAAAGATGTGAAGAAGCAAGATGACATCCGATATGACAAGTGTTCATCTCTAAAACTTGGAGGGCTTACAACTTTAGCCTTACATGCCGAAGAAGACCTTCAGACTGGATGCCTTGGCTGTTTCTGATAACTAATGAAAGAACGTGTCCAGAACGGATGGTCAGAGGCCGTCCTTATAAAGCAGCCTTTTGGGAGCTTCGGTTGGGATTTTAAAAACAATGCAATTGTCTCAAATACTCTTTCCAATTTTGAATCCCTTATATTATCGTATTCCGCATAGATAAAACATTCTAAACGTACCCTTCTTTGCTGATTCTCCACATATATTTAAAGAAAAATTGAGAACAGTCTGCTACTTAAGATTCGTATGGATTACCCCACAACTTATTTAAATGTTGTACGTTTACAAAATAAAATTACTGTTGAAAGTAAAGCTTACTCTAATTTAA
>XR_005040206.1
TAGCATTGTGTCTAACTGTCCAGTGTTGAGATGGAGATGAGTGGCCTCCTGAGTGTTCTGCTGGTCACATCAGCAGCCTTGCTGTTTATAGCTAACGGACAGAGCAACTATGATATGTTGACGGAGGTTGACAAGAAACATGTTGACATGGCTATAAGATATGCAAATAAGAATAGTGAGATTCAGAAAAATAATCCAAAAGAGCACCTCAATTTTTTACAAGTTATTGGACAATCTGAGATCAATGCTCGGGAATTTAACATCAACTTGTTGTTGAAAGCAACAGACTGCCCTAAGGCCAGTAGTGATAGTGAACATAAACATCGCCCTGAATGTAGCTTTAAATCCAGAAGGCAAAGACTTCCATGACAGCACTGACCCCTACATTGACTGTGTTCTCCACAAAGATGTGAAGAAGCAAGATGACATCCGATATGACAAGTGTTCATCTCTAAAACTTGGAGGGCTTACAACTTTAGCCTTACATGCCGAAGAAGACCTTCAGACTGGATGCCTTGGCTGTTTCTGATAACTAATGAAAGAACGTGTCCAGAACGGATGGTCAGAGGCCGTCCTTATAAAGCAGCCTTTTGGGAGCTTCGGTTGGGATTTTAAAAACAATGCAATTGTCTCAAATACTCTTTCCAATTTTGAATCCCTTATATTATCGTATTCCGCATAGATAAAACATTCTAAACGTACCCTTCTTTGCTGATTCTCCACATATATTTAAAGAAAAATTGAGAACAGTCTGCTACTTAAGATTCGTATGGATTACCCCACAACTTATTTAAATGTTGTACGTTTACAAAATAAAATTACTGTTGAAAGTAAA
>XM_036966203.1
TTATACCTATTAGCATTGTGTCTAACTGTCCAGTGTTGAGATGGAGATGAGTGGCCTCCTGAGTGTTCTGCTGGTCACATCAGCAGCCTTGCTGTTTATAGCTAACGGACAGAGCAACTATGATATGTTGACGGAGGTTGACAAGAAACATGTTGACATGGCTATAAGATATGCAAATAAGAATAGTGAGATTCAGAAAAATAATCCAAAAGAGCACCTCAATTTTTTACAAGTTATTGGACAATCTGAGATCAATGCTCGGGAATTTAACATCAACTTGTTGTTGAAAGCAACAGACTGCCCTAAGGCCAGTAGTGATAGTGAACATAAACATCGCCCTGAATGTAGCTTTAAATCCAGAAGGCCCTATATAAACTGTGTTGTTTGCAGCAAAGACTTCCATGACAGCACTGACCCCTACATTGACTGTGTTCTCCACAAAGATGTGAAGAAGATGACATCCGATATGACAAGTGTTCATCTCTAAAACTTGGAGGGCTTACAACTTTAGCCTTACATGCCGAAGAAGACCTTCAGACTGGATGCCTTGGCTGTTTCTGATAACTAATGAAAGAACGTGTCCAGAACGGATGGTCAGAGGCCGTCCTTATAAAGCAGCCTTTTGGGAGCTTCGGTTGGGATTTTAAAAACAATGCAATTGTCTCAAATACTCTTTCCAATTTTGAATCCCTTATATTATCGTATTCCGCATAGATAAAACATTCTAAACGTACCCTTCTTTGCTGATTCTCCACATATATTTAAAGAAAAATTGAGAACAGTCTGCTACTTAAGATTCGTATGGATTACCCCACAACTTATTTAAATGTTGTACGTTTACAAAATAAAATTACTGTTGAAAGTAAA

Function


NR:

description
uncharacterized protein LOC110509104 isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036966202.1 False 1435 mRNA 0.39 4 36235498 36240339
XM_036966200.1 False 886 mRNA 0.38 4 36238647 36240335
XR_005040206.1 False 835 mRNA 0.39 4 36238663 36240326
XM_036966203.1 True 867 mRNA 0.39 4 36238663 36240336

Neighbor


gene id symbol gene type direction distance location
LOC118944824 NA coding downstream 3338 36230055 ~ 36232160 (-)
fastk LOC106597078 coding downstream 16824 36192769 ~ 36218674 (-)
LOC110509100 LOC106597103 coding downstream 170926 36053418 ~ 36064572 (-)
LOC110509099 LOC106597112 coding downstream 183322 36044041 ~ 36052176 (-)
LOC118944844 riok1 coding downstream 209763 36023714 ~ 36025735 (-)
LOC110509104 NA coding upstream 3322 36243661 ~ 36245981 (-)
LOC110508243 LOC100380659 coding upstream 98746 36339085 ~ 36391023 (-)
LOC118944889 LOC100380659 coding upstream 150935 36391274 ~ 36398759 (-)
faim2a LOC106597016 coding upstream 162230 36400409 ~ 36420016 (-)
abcf2a abcf2 coding upstream 184615 36424954 ~ 36437017 (-)
G2132969 NA non-coding downstream 38066 36196849 ~ 36197432 (-)
G2132992 NA non-coding downstream 77210 36157228 ~ 36158288 (-)
G2132934 NA non-coding downstream 157795 36077476 ~ 36077703 (-)
G2132923 NA non-coding downstream 193672 36041534 ~ 36041826 (-)
G2132917 NA non-coding downstream 198161 36036659 ~ 36037337 (-)
G2133005 NA non-coding upstream 10037 36250376 ~ 36255942 (-)
G2133006 NA non-coding upstream 17398 36257737 ~ 36258004 (-)
G2133009 NA non-coding upstream 26905 36267244 ~ 36267598 (-)
G2133027 NA non-coding upstream 72430 36312769 ~ 36313075 (-)
G2133048 NA non-coding upstream 97969 36338308 ~ 36338554 (-)
G2132971 NA other downstream 10119 36224213 ~ 36225379 (-)
lyrm4 lyrm4 other downstream 217666 36005489 ~ 36017873 (-)
G2131641 NA other downstream 1717369 34516522 ~ 34518129 (-)
G2131621 NA other downstream 1749322 34485869 ~ 34486176 (-)
G2133007 NA other upstream 22663 36263002 ~ 36263330 (-)
LOC110509111 LOC106597319 other upstream 316161 36526794 ~ 36557532 (-)
LOC110509127 LOC106596915 other upstream 1526379 37766370 ~ 37996222 (-)
G2134625 NA other upstream 1887790 38128129 ~ 38130407 (-)
G2135034 LOC106596897 other upstream 2279232 38519571 ~ 38526920 (-)

Expression



Co-expression Network