LOC118944889 (LOC100380659)


Basic Information

Item Value
gene id LOC118944889
gene name LOC100380659
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36391274 ~ 36398759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967108.1
AAAGCTGATTAGGCAAACGTGAAAAGTGAAATGACAAAACATGTTTATAAGTAGGCCTACCAGCCTATTATTCCACTTTGTCAAAAAATAATGCACCGTGTGGATAATCTATATTCATACAAGGGAAGGAAAGTTGCCACCCTTTCTCAGGAAAACGAAAGTTATCAGAATGTACAGTACAACATGTCCATATCTTCGATAGACTTTCAGTATTGACACAGACAGAGTTTTGACAGCGTGAAGAAGAGTCGACAAAACGATCGGCTACATCAAGATGAAGTGTCCTGGCTGTGGTCACCAAGTGGAAAAATCGTCAAAATTTTGCAGTGAATGCGGATTGAGGTTAGCTCCTCAAATTTGCACcacagGTGGGACCACTTCAGAGCATCAAACATCTGTGGTCCGTGAAGCAGAGCGCCAGAAGGAGGCTGCGCCACTGACGTGGTCGGGGAACAAGACCGACGCGTCTACGAAACACTCCAGTGAAGAACCAGGGGGCAATGTCAAGAAAAAGAGTGGAGGTTCTTCCAGCGCTATTGAGCTGAGCACTGACACACGTCAAGAGAAAGATGAGTTGTCTGGCAGTGAGAGCTCTACTACCGCCACACCTACTGGCCCTCCTGTCAACACTGCCACACCTACTGGCCCTCCTGTCAACACTGCCACACCTACTGGCCCTCCTGTCAACACTGCCACACCTACTGGCCCTCCTGTCAACACCGCCACACCTACTGGCCCTCCTGTCAACACTGCCACACCTACTGGCCCTCCTGTCAACACCGCCACACCTGCTGGCCCTCCTGTCAACACCGCCACACCTGCTGGCCCTCCTCCTGTCAACACTGCCACACCTACTGGCCCTCCTGTCAACACCGCCACACCTACTGGCCCTCCTGTCAACACCGCCACACCTGCTGGCCCTCCTGTCAACACTGCCACACCTACTGGCCCTCCTGTCAACACCGCCACACCTACTGGCCCTCCTGTCAACACTGCCACACCTGCTGGCCCTCCTGTCAACACCGCCACACCTACTGGCCCTCCTGTCAACACTGCCACACCTACTGGCCCTCCTGTCAACACCACCACACCTGCTGGCCCTCCTCCTGTCAACACCGCCACACCTGCTGGCCCTCCAACCATGCCTATAGCCTCTCCAAACCCATCCCCACACCAAACACTGCCAGAAGACCAGGCCAAGGGTCCATCGAAGGCAAACGTAGACGCACCAGTGAATGAGCCAAACCAACCTAGTCCTACATCAGACACACAGGCCTCATCCACACCCGAGACAGCTGATCAGAACACAGGAGGACGTGCCTCAGACCCAACTCAACCAGCCAGTAAACTCTTGGAGGAGGAAGAACTGAAGGGGACGTCACACGGGTCAACGGGGCCATCAAAAAGCCTTGATGGTGAAGGCAACACAGAGGCTAGAGTTCTGAATGAACGGAAGACCTCTAGTAACCAGACCGACGAGAATATAACAAATGAAGCAAACTCAAAGAAGTGTGTTGACCAATCCCAAGTATCCCTTGGTGATCAGAGGGGTTCTGACCCAACAGATGAGCCAAACACTAGTCAAACACAATCTACTGGTCCAGCTCCCTCAGTAACACAGGAGGTGCCTGAGAAGACATCTAAGAGAAaagatcagaacagaacagaacctgcctCAGGTCCAAGTCAATCAGTAGGGCAGTTGTCATATAAAGACGTTCTGGTGGGGACCTCTCAGGAGACGGGAGATCTGTCCAGGAGGCAAGGGGTTGGCGCCAGTAACTACAGAGACCAGAGCAGGAAAAATGAAGCAAACTCACAGAACTTTGTTTCTGGATCCCACAAGGCAGAGGCTGGTGACAAGCCTCAAGAATCAAGGCAAGAGACTTCCAAGCCAAACAAGGAACCAGAGAAGCTGAGTAATACGGGTGGTGGAGATGCATCCAAGTCATCTACTATTGACGCCACAGTTGCAGGGAAAGATCTGCCTCCGAACCAACGTAATGAAGACTGCTTCCAGCATCAGCCACTGCCTCCTCAGCTGCCACCAAGAACACAACAGGTCCCTAGGAGTGATGACCTCACCATCTATTTCCATGCTGTCATTTCCAAAGACTTCAAACTGAACTCAACTGACCGGATATTCTTAAGATCTGGAAGTCTTTTTGGATCTTGGGACATAAATGTTGTGGAAATGTTTATCGTCTGGTAAGGTCTTTAATGAAAA
>TU2439021
GAAAGTTATCAGAATGTACAGTACAACATGTCCATATCTTCGATAGACTTTCAGTATTGACACAGACAGAGTTTTGACAGCGTGAAGAAGAGTCGACAAAACGATCGGCTACATCAAGATGAAGTGTCCTGGCTGTGGTCACCAAGTGGAAAAATCGTCAAAATTTTGCAGTGAATGCGGATTGAGGTTAGCTCCTCAAATTTGCACcacagGTGGGACCACTTCAGAGCATCAAACATCTGTGGTCCGTGAAGCAGAGCGCCAGAAGGAGGCTGCGCCACTGACGTGGTCGGGGAACAAGACCGACGCGTCTACGAAACACTCCAGTGAAGAACCAGGGGGCAATGTCAAGAAAAAGGTCCCAACTCTCCACTAGAATATAGAGCATATGCAGAGTCAGGATTGTTTTACACACAGCGGTAGTTCAAAACACTTTACTTAAAGCAGACGGGCATGTTGTGTCATTTCCTGTTATGAGCATTCATACGCCTTTTGATAATGTCACCTTATTAAAAAGGCTTCTAATATTTCGTTTTTTTGTAACCTCTTTTTGAAATGACTCAACATCTGTCGTTAAAGTCAGAGTAT

Function

NR:

description
E3 ubiquitin-protein ligase rnf213-alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967108.1 False 2227 mRNA 0.51 7 36391274 36398759
TU2439021 True 588 lncRNA 0.43 3 36393700 36398603

Neighbor

gene id symbol gene type direction distance location
LOC110508243 LOC100380659 coding downstream 251 36339085 ~ 36391023 (-)
LOC110509104 NA coding downstream 145293 36243661 ~ 36245981 (-)
LOC118936612 NA coding downstream 150935 36235498 ~ 36240339 (-)
LOC118944824 NA coding downstream 159114 36230055 ~ 36232160 (-)
fastk LOC106597078 coding downstream 172600 36192769 ~ 36218674 (-)
faim2a LOC106597016 coding upstream 3810 36400409 ~ 36420016 (-)
abcf2a abcf2 coding upstream 26195 36424954 ~ 36437017 (-)
LOC110508244 LOC106597000 coding upstream 44464 36443223 ~ 36454287 (-)
LOC110509111 LOC106597319 coding upstream 128035 36526794 ~ 36557532 (-)
LOC110509116 LOC106597376 coding upstream 399686 36798445 ~ 36958711 (-)
G2133052 NA non-coding downstream 20121 36370544 ~ 36371153 (-)
G2133048 NA non-coding downstream 52720 36338308 ~ 36338554 (-)
G2133027 NA non-coding downstream 78199 36312769 ~ 36313075 (-)
G2133009 NA non-coding downstream 123676 36267244 ~ 36267598 (-)
G2133006 NA non-coding downstream 133270 36257737 ~ 36258004 (-)
G2133057 NA non-coding upstream 38486 36437245 ~ 36437444 (-)
G2133058 NA non-coding upstream 38834 36437593 ~ 36437811 (-)
G2133040 NA non-coding upstream 39749 36438508 ~ 36438901 (-)
G2133115 NA non-coding upstream 176619 36575378 ~ 36578143 (-)
G2133007 NA other downstream 127944 36263002 ~ 36263330 (-)
G2132966 NA other downstream 141499 36235515 ~ 36249775 (-)
G2132971 NA other downstream 165895 36224213 ~ 36225379 (-)
LOC118944844 riok1 other downstream 366073 36023714 ~ 36025735 (-)
lyrm4 lyrm4 other downstream 373442 36005489 ~ 36017873 (-)
LOC110509127 LOC106596915 other upstream 1367959 37766370 ~ 37996222 (-)
G2134625 NA other upstream 1729370 38128129 ~ 38130407 (-)
G2135034 LOC106596897 other upstream 2120812 38519571 ~ 38526920 (-)
G2135837 NA other upstream 2606702 39005461 ~ 39006050 (-)

Expression


Co-expression Network