abcf2a (abcf2)


Basic Information

Item Value
gene id abcf2a
gene name abcf2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36424954 ~ 36437017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590074.2
gggcgaggtgaaggtcgagagccatgtgtcctcaaACTCGACcctgccgcactgcttcttgacacactgctcgcttaacccggaagccagccgcacctatgtgtcggaggaaacacagtccAGCTGGCGACCAAATtcagcgtgcatgcacccggcccgccacccacaaggagtctctagagcgcgatgggacaaggacatcccggccggctaaaccctcccctaacccggacgacactgggccaattgtgtgccgcctcaagGGACTCGTGGCCAGCTGCGACACatcctgggatcaaacccggGTTGAATTTTTTTCCCTCGAGGTCCTCAGCAGCCATGCCctccgacctggccaagaagaAGGCGCAGAAGAAGAAGGAAGCCGCCAAATCCCGGCAGAAGGCCAAAAAACCAGGagaggacggagagggagagatactagAGCAAGGCCAGCAGAATGGAGCAGAAAGCAACGGAGTGGATATGCTGACCAAGGAGATGGACGAGTTTGAGCTGAAGAAAACAGAGGCGCGGGCTGTAACCGGCGTCCTGGCGTCGCACCCCAACAGCACGGACGTCCACGTCGCCAGCTTGTCGCTCACCTTCCACGGGCAAGAGCTGTTGCAGGACACCAGCCTGGAGCTCAACTCGGGCCGGCGCTATGGCCTCATTGGCCTCAACGGCACTGGTAAATCCATGTTGCTGTCAGCCATTGGCCACCGCGAGATACCTATCCCAGAGCACATTGACATCTACCACCTGACCCGTGAGATGGCGCCCAGCGACAAGACGGCCCTGCAGTGTGTCATGGAGGTGGACGCGGAGAGGATCCATCTGGAGAAGGAGGCCGAGCGCCTGGCCTCCGAGGACTCTGAGTGTGAGAAGCTGATGGAGCTGTATGAGCGTCTGGAGGAGCTGGACGCAGACAAGGCCGAGGTGCGGGCCTCCCAGATCCTCCACGGCCTGGGCTTTACCGCCGCCATGCAGCAGAAGAAGCTCAAGGACTTCAGCGGAGGCTGGAGGATGCGTGTCGCTCTGGCCAGAGCCCTGTTCTTGAAGCCCTTCATGTTGCTGCTGGATGAGCCCACCAATCACTTGGACTTGGATGCCTGTGTGTGGCTGGAGGAAGAGCTTAGCCAATTTAAACGTATTTTGGTCCTGATTTCCCATTCGCAAGACTTCCTTAACGGCGTGTGCACCAACATCATGCACTTACACGAGCGCAAGCTGAAATACTACACGGGCAACTACGATCAGTacataaagaccagggaggagCTGGAAGAGAACCAGATGAAGAGATTCAACTGGGAGCAGGACCAGATCAAACACATGAAGAACTACATAGCCCGGTTTGGGCACGGCTCAGCCAAGTTGGCTCGCCAAGCCCAGAGTAAAGAGAAAACCCTGCAGAAGATGGTGGCCTCTGGCCTGACTGAGAGCGTTTCCAATGACAAAaCCCTGTCATTTTGTTTTCCTCCCTGTGGGAAGATTCCCCCTCCGGTCATCATGGTACAGAATGTCAGCTTCAAGTACTCCGATGACCAGCCCCATATATACAAGAACCTTGAGTTCGGCATAGACCTCGACACCCGAGTGGCCCTTGTGGGGCCCAACGGGGCCGGGAAATCCACCTTGCTCAAACTTCTCACTGGAGAGCTCCTCCCTACTGACGGTATGATCCGCAAGAACTCCCACGTCAAGATTGGCAGATATCACCAGCATCTAACTGAGCAGCTGGAACTCGACCTCTCGCCCCTGGACTACATGATGAAGTGTTACCCAGAGatcaaggagagggaggagatgaggaagatCATTGGCCGTTATGGGCTGACGGGCAAACAGCAGGTGAACCCCATCCGGAACCTGTCTGATGGGCAGAAGTGCCGGGTGTGCTTCGCCTGGCTGGCTGGTCAGAATGCCCACATGCTCTTCCTGGATGAGCCCACCAATCACTTGGACATCGAGACCATTGACGCCCTGGCCGACGCCATCAACGAGTACGAGGGCGGCATGATGTTGGTTAGCCACGACTTCAGGCTCATCCAGCAGGTGGCCCAGGAGATCTGGGTTTGTGAAAAGCAGACGATCACCAAATGGAACCGGGACATCTTGGCTTACAAACACCATCTGAAAAAGAAGATTGACAAAAATTCGCACggtgtataaaaaaaacaaacatattatttaaaaaaaacaacgacCTCCCCAGATTCAAGACTGTGGACTCCCAATTTCCCATTCCATCTTCACTTGACTATTTATCTCAAGAAGCATGTTGCTCCATTTCTTGATGCCCATTTCCTTCCTGCTTAAAGCCTCTTTACAGACTGCTGGAAGGTTGTGGTGCGTCCTACTTGCCTTCCATTGCTACCCCTTCAACAGGCATACATACGGTATCTTCATTTCTCTGAATTAAAAAGTATTAAAAAATAATATGTATCCATTTTTAATGTAGTGGAGAACATGTGCACTTTGTTTTTAATTCACGGTTCATGACATTTCCACAGATCAGATCTAGGTAGGATATAAACTGCctgcagggttgggtaggtaaAAATGTAATACGTTACTAGTTACCTGTTCAAAATTGTCATCAgtcttttggattacccaaactctgTAATCTGACTTACTTTTGATAACTTTCCCCTTTAGGAGGCATTTAAAGACAAATGATCCATAAAACGCATTTGTCGTCATCGGTGGTCTGACTtgtcagactcactcaggtggaacaaatttaaacttgcaccccccccccccccccccaatgctgAATTGTCATTGAGAAAGGtgtcatgattttttttttttttttttttgtgatcatACTTTTTAAATCTAAAAAGTAATCTAGTTCAAGtgtgtaatctgattacaatattttttgctGGGAACGTAACTGATTAGTTTttagtaatcagattacatgtaatcagttacttgCCGCCCGGTTTTTATTTTCCTTTCACTTTTTAAAAGAGCTTTATTattttgtcattatttaacaCTGTACCAGCAATAATGGGAATGTCTGAAATAAAGGAGCAAAATAA
>XM_021590077.2
CCCGCCCTACATTAAAATGAGAAGGTGGAGCTACAAAGACAACTCGGCGTTTCATTGGTCGGGTGAGCCGGCGTAGGGAACACGCGACAACGAGATCATTCTTTCTTGTGCGTTTCCAACGTCGTCGCCGCCGCCGGTGAACAGGTACAAGACCGGTTGAATTTTTTTCCCTCGAGGTCCTCAGCAGCCATGCCctccgacctggccaagaagaAGGCGCAGAAGAAGAAGGAAGCCGCCAAATCCCGGCAGAAGGCCAAAAAACCAGGagaggacggagagggagagatactagAGCAAGGCCAGCAGAATGGAGCAGAAAGCAACGGAGTGGATATGCTGACCAAGGAGATGGACGAGTTTGAGCTGAAGAAAACAGAGGCGCGGGCTGTAACCGGCGTCCTGGCGTCGCACCCCAACAGCACGGACGTCCACGTCGCCAGCTTGTCGCTCACCTTCCACGGGCAAGAGCTGTTGCAGGACACCAGCCTGGAGCTCAACTCGGGCCGGCGCTATGGCCTCATTGGCCTCAACGGCACTGGTAAATCCATGTTGCTGTCAGCCATTGGCCACCGCGAGATACCTATCCCAGAGCACATTGACATCTACCACCTGACCCGTGAGATGGCGCCCAGCGACAAGACGGCCCTGCAGTGTGTCATGGAGGTGGACGCGGAGAGGATCCATCTGGAGAAGGAGGCCGAGCGCCTGGCCTCCGAGGACTCTGAGTGTGAGAAGCTGATGGAGCTGTATGAGCGTCTGGAGGAGCTGGACGCAGACAAGGCCGAGGTGCGGGCCTCCCAGATCCTCCACGGCCTGGGCTTTACCGCCGCCATGCAGCAGAAGAAGCTCAAGGACTTCAGCGGAGGCTGGAGGATGCGTGTCGCTCTGGCCAGAGCCCTGTTCTTGAAGCCCTTCATGTTGCTGCTGGATGAGCCCACCAATCACTTGGACTTGGATGCCTGTGTGTGGCTGGAGGAAGAGCTTAGCCAATTTAAACGTATTTTGGTCCTGATTTCCCATTCGCAAGACTTCCTTAACGGCGTGTGCACCAACATCATGCACTTACACGAGCGCAAGCTGAAATACTACACGGGCAACTACGATCAGTacataaagaccagggaggagCTGGAAGAGAACCAGATGAAGAGATTCAACTGGGAGCAGGACCAGATCAAACACATGAAGAACTACATAGCCCGGTTTGGGCACGGCTCAGCCAAGTTGGCTCGCCAAGCCCAGAGTAAAGAGAAAACCCTGCAGAAGATGGTGGCCTCTGGCCTGACTGAGAGCGTTTCCAATGACAAAaCCCTGTCATTTTGTTTTCCTCCCTGTGGGAAGATTCCCCCTCCGGTCATCATGGTACAGAATGTCAGCTTCAAGTACTCCGATGACCAGCCCCATATATACAAGAACCTTGAGTTCGGCATAGACCTCGACACCCGAGTGGCCCTTGTGGGGCCCAACGGGGCCGGGAAATCCACCTTGCTCAAACTTCTCACTGGAGAGCTCCTCCCTACTGACGGTATGATCCGCAAGAACTCCCACGTCAAGATTGGCAGATATCACCAGCATCTAACTGAGCAGCTGGAACTCGACCTCTCGCCCCTGGACTACATGATGAAGTGTTACCCAGAGatcaaggagagggaggagatgaggaagatCATTGGCCGTTATGGGCTGACGGGCAAACAGCAGGTGAACCCCATCCGGAACCTGTCTGATGGGCAGAAGTGCCGGGTGTGCTTCGCCTGGCTGGCTGGTCAGAATGCCCACATGCTCTTCCTGGATGAGCCCACCAATCACTTGGACATCGAGACCATTGACGCCCTGGCCGACGCCATCAACGAGTACGAGGGCGGCATGATGTTGGTTAGCCACGACTTCAGGCTCATCCAGCAGGTGGCCCAGGAGATCTGGGTTTGTGAAAAGCAGACGATCACCAAATGGAACCGGGACATCTTGGCTTACAAACACCATCTGAAAAAGAAGATTGACAAAAATTCGCACggtgtataaaaaaaacaaacatattatttaaaaaaaacaacgacCTCCCCAGATTCAAGACTGTGGACTCCCAATTTCCCATTCCATCTTCACTTGACTATTTATCTCAAGAAGCATGTTGCTCCATTTCTTGATGCCCATTTCCTTCCTGCTTAAAGCCTCTTTACAGACTGCTGGAAGGTTGTGGTGCGTCCTACTTGCCTTCCATTGCTACCCCTTCAACAGGCATACATACGGTATCTTCATTTCTCTGAATTAAAAAGTATTAAAAAATAATATGTATCCATTTTTAATGTAGTGGAGAACATGTGCACTTTGTTTTTAATTCACGGTTCATGACATTTCCACAGATCAGATCTAGGTAGGATATAAACTGCctgcagggttgggtaggtaaAAATGTAATACGTTACTAGTTACCTGTTCAAAATTGTCATCAgtcttttggattacccaaactctgTAATCTGACTTACTTTTGATAACTTTCCCCTTTAGGAGGCATTTAAAGACAAATGATCCATAAAACGCATTTGTCGTCATCGGTGGTCTGACTtgtcagactcactcaggtggaacaaatttaaacttgcaccccccccccccccccccaatgctgAATTGTCATTGAGAAAGGtgtcatgattttttttttttttttttttgtgatcatACTTTTTAAATCTAAAAAGTAATCTAGTTCAAGtgtgtaatctgattacaatattttttgctGGGAACGTAACTGATTAGTTTttagtaatcagattacatgtaatcagttacttgCCGCCCGGTTTTTATTTTCCTTTCACTTTTTAAAAGAGCTTTATTattttgtcattatttaacaCTGTACCAGCAATAATGGGAATGTCTGAAATAAAGGAGCAAAATAA
>XM_036966262.1
tATGCTCAaagagtgacatgtctgGTTGAATTTTTTTCCCTCGAGGTCCTCAGCAGCCATGCCctccgacctggccaagaagaAGGCGCAGAAGAAGAAGGAAGCCGCCAAATCCCGGCAGAAGGCCAAAAAACCAGGagaggacggagagggagagatactagAGCAAGGCCAGCAGAATGGAGCAGAAAGCAACGGAGTGGATATGCTGACCAAGGAGATGGACGAGTTTGAGCTGAAGAAAACAGAGGCGCGGGCTGTAACCGGCGTCCTGGCGTCGCACCCCAACAGCACGGACGTCCACGTCGCCAGCTTGTCGCTCACCTTCCACGGGCAAGAGCTGTTGCAGGACACCAGCCTGGAGCTCAACTCGGGCCGGCGCTATGGCCTCATTGGCCTCAACGGCACTGGTAAATCCATGTTGCTGTCAGCCATTGGCCACCGCGAGATACCTATCCCAGAGCACATTGACATCTACCACCTGACCCGTGAGATGGCGCCCAGCGACAAGACGGCCCTGCAGTGTGTCATGGAGGTGGACGCGGAGAGGATCCATCTGGAGAAGGAGGCCGAGCGCCTGGCCTCCGAGGACTCTGAGTGTGAGAAGCTGATGGAGCTGTATGAGCGTCTGGAGGAGCTGGACGCAGACAAGGCCGAGGTGCGGGCCTCCCAGATCCTCCACGGCCTGGGCTTTACCGCCGCCATGCAGCAGAAGAAGCTCAAGGACTTCAGCGGAGGCTGGAGGATGCGTGTCGCTCTGGCCAGAGCCCTGTTCTTGAAGCCCTTCATGTTGCTGCTGGATGAGCCCACCAATCACTTGGACTTGGATGCCTGTGTGTGGCTGGAGGAAGAGCTTAGCCAATTTAAACGTATTTTGGTCCTGATTTCCCATTCGCAAGACTTCCTTAACGGCGTGTGCACCAACATCATGCACTTACACGAGCGCAAGCTGAAATACTACACGGGCAACTACGATCAGTacataaagaccagggaggagCTGGAAGAGAACCAGATGAAGAGATTCAACTGGGAGCAGGACCAGATCAAACACATGAAGAACTACATAGCCCGGTTTGGGCACGGCTCAGCCAAGTTGGCTCGCCAAGCCCAGAGTAAAGAGAAAACCCTGCAGAAGATGGTGGCCTCTGGCCTGACTGAGAGCGTTTCCAATGACAAAaCCCTGTCATTTTGTTTTCCTCCCTGTGGGAAGATTCCCCCTCCGGTCATCATGGTACAGAATGTCAGCTTCAAGTACTCCGATGACCAGCCCCATATATACAAGAACCTTGAGTTCGGCATAGACCTCGACACCCGAGTGGCCCTTGTGGGGCCCAACGGGGCCGGGAAATCCACCTTGCTCAAACTTCTCACTGGAGAGCTCCTCCCTACTGACGGTATGATCCGCAAGAACTCCCACGTCAAGATTGGCAGATATCACCAGCATCTAACTGAGCAGCTGGAACTCGACCTCTCGCCCCTGGACTACATGATGAAGTGTTACCCAGAGatcaaggagagggaggagatgaggaagatCATTGGCCGTTATGGGCTGACGGGCAAACAGCAGGTGAACCCCATCCGGAACCTGTCTGATGGGCAGAAGTGCCGGGTGTGCTTCGCCTGGCTGGCTGGTCAGAATGCCCACATGCTCTTCCTGGATGAGCCCACCAATCACTTGGACATCGAGACCATTGACGCCCTGGCCGACGCCATCAACGAGTACGAGGGCGGCATGATGTTGGTTAGCCACGACTTCAGGCTCATCCAGCAGGTGGCCCAGGAGATCTGGGTTTGTGAAAAGCAGACGATCACCAAATGGAACCGGGACATCTTGGCTTACAAACACCATCTGAAAAAGAAGATTGACAAAAATTCGCACggtgtataaaaaaaacaaacatattatttaaaaaaaacaacgacCTCCCCAGATTCAAGACTGTGGACTCCCAATTTCCCATTCCATCTTCACTTGACTATTTATCTCAAGAAGCATGTTGCTCCATTTCTTGATGCCCATTTCCTTCCTGCTTAAAGCCTCTTTACAGACTGCTGGAAGGTTGTGGTGCGTCCTACTTGCCTTCCATTGCTACCCCTTCAACAGGCATACATACGGTATCTTCATTTCTCTGAATTAAAAAGTATTAAAAAATAATATGTATCCATTTTTAATGTAGTGGAGAACATGTGCACTTTGTTTTTAATTCACGGTTCATGACATTTCCACAGATCAGATCTAGGTAGGATATAAACTGCctgcagggttgggtaggtaaAAATGTAATACGTTACTAGTTACCTGTTCAAAATTGTCATCAgtcttttggattacccaaactctgTAATCTGACTTACTTTTGATAACTTTCCCCTTTAGGAGGCATTTAAAGACAAATGATCCATAAAACGCATTTGTCGTCATCGGTGGTCTGACTtgtcagactcactcaggtggaacaaatttaaacttgcaccccccccccccccccccaatgctgAATTGTCATTGAGAAAGGtgtcatgattttttttttttttttttttgtgatcatACTTTTTAAATCTAAAAAGTAATCTAGTTCAAGtgtgtaatctgattacaatattttttgctGGGAACGTAACTGATTAGTTTttagtaatcagattacatgtaatcagttacttgCCGCCCGGTTTTTATTTTCCTTTCACTTTTTAAAAGAGCTTTATTattttgtcattatttaacaCTGTACCAGCAATAATGGGAATGTCTGAAATAAAGGAGCAAAATAA

Function

symbol description
abcf2 Predicted to enable ATP binding activity. Located in membrane.

NR:

description
ATP-binding cassette sub-family F member 2-like isoform X2

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K06185 ABCF2; ATP-binding cassette, subfamily F, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590074.2 False 3065 mRNA 0.50 15 36424954 36434911
XM_021590077.2 False 2915 mRNA 0.49 15 36424954 36436314
XM_036966262.1 True 2784 mRNA 0.49 15 36424954 36437017

Neighbor

gene id symbol gene type direction distance location
faim2a LOC106597016 coding downstream 4938 36400409 ~ 36420016 (-)
LOC118944889 LOC100380659 coding downstream 26195 36391274 ~ 36398759 (-)
LOC110508243 LOC100380659 coding downstream 33931 36339085 ~ 36391023 (-)
LOC110509104 NA coding downstream 178973 36243661 ~ 36245981 (-)
LOC118936612 NA coding downstream 184615 36235498 ~ 36240339 (-)
LOC110508244 LOC106597000 coding upstream 6206 36443223 ~ 36454287 (-)
LOC110509111 LOC106597319 coding upstream 89777 36526794 ~ 36557532 (-)
LOC110509116 LOC106597376 coding upstream 361428 36798445 ~ 36958711 (-)
LOC118944834 NA coding upstream 563506 37000523 ~ 37001147 (-)
impa1 impa1 coding upstream 877594 37314611 ~ 37333488 (-)
G2133052 NA non-coding downstream 53801 36370544 ~ 36371153 (-)
G2133048 NA non-coding downstream 86400 36338308 ~ 36338554 (-)
G2133027 NA non-coding downstream 111879 36312769 ~ 36313075 (-)
G2133057 NA non-coding upstream 228 36437245 ~ 36437444 (-)
G2133058 NA non-coding upstream 576 36437593 ~ 36437811 (-)
G2133040 NA non-coding upstream 1491 36438508 ~ 36438901 (-)
G2133115 NA non-coding upstream 138361 36575378 ~ 36578143 (-)
G2133134 NA non-coding upstream 172115 36609132 ~ 36609348 (-)
G2133007 NA other downstream 161624 36263002 ~ 36263330 (-)
G2132966 NA other downstream 175179 36235515 ~ 36249775 (-)
G2132971 NA other downstream 199575 36224213 ~ 36225379 (-)
LOC118944844 riok1 other downstream 399753 36023714 ~ 36025735 (-)
lyrm4 lyrm4 other downstream 407122 36005489 ~ 36017873 (-)
LOC110509127 LOC106596915 other upstream 1329701 37766370 ~ 37996222 (-)
G2134625 NA other upstream 1691112 38128129 ~ 38130407 (-)
G2135034 LOC106596897 other upstream 2082554 38519571 ~ 38526920 (-)
G2135837 NA other upstream 2568444 39005461 ~ 39006050 (-)

Expression


Co-expression Network