LOC110508244 (LOC106597000)


Basic Information

Item Value
gene id LOC110508244
gene name LOC106597000
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36443223 ~ 36454287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966857.1
ACAATAAGCCCCTCTGCTTTCCAGAAGCTCAGGCCACAATAAAGAGCCATGCGCCCAGGGACTACGGCTGTTTGACACGATCAGGCCATCGAACAGATTCTTAAGCCTCTCGACGATGTCCATGCAGGGTGACTAGCCTTCTTCTGACACCCACACACCTTGTTCTCTCCCATCTCATACCCGCATTGTCCAAGAACAAGAGGCCATGCCTCTGCCGAGACGTCGATCCTCCTTCCTGAACCAACCTGCTGCCAAGGAGCGCCCAGGTAGTGCCAACACCAGGGTTGGCACCGCAGGCATCACCAATGCCCCCCGGGGAGTCTTTGTGGGGACGGCCCCCACGGGCGTCACCTCCAGCATGGGCACGCGCGTGTCACGACGAGCCCTGGGCATCAGCAGTGTGTTCCTGCAGGGGCTGAGGAGCACGGCCGTGCCTGTGATGCCCCACGGGGTCGGGACCGGTGGCAGGCAGTACCCCGGGGGTGCCGAGAACCTCAACAGCTGCCTGATGGAGTACAGGGACAAGGTGCACGCCCTGGAGCAGCTCAACCAGCAGCTGGAGGAGCAGATCAAGCACTGCCTGGATCGTAAGGTGTCCAGCGCTGGAGCCTGGGGTCCCCTCAGACAAGACTGGGAGGATGTTTACAGACATGTTAGTGAGTCCATCCTTGCCAATGCCAGGCTAATGCTGCAGACAGAGAATGTGCAGGCCAACGCTGAGGACTTCAAGGACCGGTATGAGAATGAACAGCCGTTCAGGAAGGCGATGGAGGAAGAGATCAGCTCTCTGTACAAGGTGATTGACGACGCCAACCTGACGAAGTCGGACCTGGAGAGCCAGATGGACAGCATGAGGGCTGAGCTTCGGGACTTGGCCTGCAACCACGAGGAGGACGTGAGGGTGCTCTACAAGCAGATGGCAGGTGGCGAGATGGACGAGCTGGACGCTCCCATTGAGACCAATCTGGACCAGATACTGGCCTACATTCGCTCCCACTGGGAAAGAGTCATCGAGAAGAACCGTGCCGAGACCGACGCCTATCTGGAATGCAAGCAGGCGGAGAGTATGGGCAGTAAACTGAGCcgtgaggaggaggagctggagagTCTGAAGACAGAGTGTAATGATGCTGGCTGTAAGATCCAGAGTCTGCAGGCCCAAACTGAGTCTATCAGAGCACTGAAGCGAGGTCTGGAGAACTCCCTGAACGACGCCAGGCATTGGCACGACATCGAGCTGCAGAACCTGGGATCCGTCATCGGCAAGCTGGAGTCGGAGCTGGGTGACGTCCACGGCGACGTCGAACAACAGCGTCGCGACTATGAGACGTTGCTGGGAAACAAAATGCGTCTGGAGCTGGAAATCGGCACCTACCACGGCATCTTGGACGGGGAGGAGAGCCGCTACCACCCCTCCATGTGCACAGGTGCATCAGAGCCCGAGGGGAAACAAACTCCCCTTCCTCCCCATTCAGAGCCCTCTGGCAACCCAGCCCTCCAAGGCTCCAACACATCTAGTCCCTAGTGGAAGGACTTTGGGCCATTTGGGGAATAAAGCTCTCACACCGTTGTTCTCCAAGGTTTCTGTGCAAGGTATCATTTTGAAACCACGTTTTCACTACAGAGTTGAATAAAATCAAAACCTCTGCAAGAA

Function

NR:

description
PREDICTED: phakinin-like isoform X1

GO: NA

KEGG:

id description
K10379 BFSP2; phakinin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966857.1 True 1654 mRNA 0.57 8 36443223 36454287

Neighbor

gene id symbol gene type direction distance location
abcf2a abcf2 coding downstream 6206 36424954 ~ 36437017 (-)
faim2a LOC106597016 coding downstream 23207 36400409 ~ 36420016 (-)
LOC118944889 LOC100380659 coding downstream 44464 36391274 ~ 36398759 (-)
LOC110508243 LOC100380659 coding downstream 52200 36339085 ~ 36391023 (-)
LOC110509104 NA coding downstream 197242 36243661 ~ 36245981 (-)
LOC110509111 LOC106597319 coding upstream 72507 36526794 ~ 36557532 (-)
LOC110509116 LOC106597376 coding upstream 344158 36798445 ~ 36958711 (-)
LOC118944834 NA coding upstream 546236 37000523 ~ 37001147 (-)
impa1 impa1 coding upstream 860324 37314611 ~ 37333488 (-)
fbxl7 fbxl7 coding upstream 883238 37337525 ~ 37470844 (-)
G2133040 NA non-coding downstream 4322 36438508 ~ 36438901 (-)
G2133058 NA non-coding downstream 5412 36437593 ~ 36437811 (-)
G2133057 NA non-coding downstream 5779 36437245 ~ 36437444 (-)
G2133115 NA non-coding upstream 121091 36575378 ~ 36578143 (-)
G2133134 NA non-coding upstream 154845 36609132 ~ 36609348 (-)
G2133135 NA non-coding upstream 157289 36611576 ~ 36611832 (-)
G2133144 NA non-coding upstream 168897 36623184 ~ 36623559 (-)
G2133150 NA non-coding upstream 175290 36629577 ~ 36629803 (-)
G2133007 NA other downstream 179893 36263002 ~ 36263330 (-)
G2132966 NA other downstream 193448 36235515 ~ 36249775 (-)
G2132971 NA other downstream 217844 36224213 ~ 36225379 (-)
LOC118944844 riok1 other downstream 418022 36023714 ~ 36025735 (-)
lyrm4 lyrm4 other downstream 425391 36005489 ~ 36017873 (-)
LOC110509127 LOC106596915 other upstream 1312431 37766370 ~ 37996222 (-)
G2134625 NA other upstream 1673842 38128129 ~ 38130407 (-)
G2135034 LOC106596897 other upstream 2065284 38519571 ~ 38526920 (-)
G2135837 NA other upstream 2551174 39005461 ~ 39006050 (-)

Expression


Co-expression Network