zgc:136930 (LOC106597301)


Basic Information

Item Value
gene id zgc:136930
gene name LOC106597301
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36474132 ~ 36481583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966843.1
GGCTTGGGAGGTGGACTGGCTATGGGGTCTGGGCTGGGGTTGGGTGGGGGAGCAGGGGGTGGGCTGGGTTTCGGTGGTGGcttaggtggaggtggaggtggtggtggtggaggatatGGTGGAGGTTATGGTGGAGGATATGGTGGAGGCGGAGGTTATGGTGGAGGTTATGGTGGAGGttatggtggaggtggaggttatGGGGGTGGAGCCCTGATGGCCAGTCCTGCCTTCGCTATGGGACGCACCATGGCAGCAGGGGGGATCGGTGGCGGGTCGGCCATGGCATTGGGTACCTCTCTGGGCCCAGCATTGGCTCCTATGCGGTCCCGGCAGGCAGAGAAGAACATGTTGTCCGGCCTCAACGAACGTTTCTCCTCGTACATGGGCAAAGTGAGAGTCCTCCAGCAGGAGAACGCCATCCTGGAGGCCAGACTGTCCCAGTTGTCGGGGGGTGCGGACATGGGGTCTCCAgagtcctccaccaccaccacagcggAGTACGAGGCTCAGCTCAGCGAGTACCGTGTTGCCCTGGAGACGCTCACCCTGGACACCATCAAACTGGAGATCGAGCTGGACAACGTTCGTGGCACTGCCCACGAACTCAAGGCCAAGTTTGACTTTGAGCAAGGTGTGAAGTTTCAGCTGGACTCTGACATTTCAGCTATGAAGAAGgacatagatTTGGCATCTGAACTACGCATTGATTTGGACGCCAAGTACTCCAGCTTGAAGGACGAACTGGACTTTGTCAGCAAGACGCAGGAAGAGGAATTGTCCACTCTGCAGTCCAAACTGGGCACCACGTCTATGGACACGTCCGTGTCCATGATCGAGGTTGACACGGGCAAGTCCTTTGACATCTCCACCGCTCTCAACAAGATCAGGCTGGAGTACGAGAAGTCTGTACAGCAACACAGAGATGAGGCGGACGCCTACTACAAACTGAAGaTGGAAGAGATACAGACCGCTACCGCCAAGAGTTCAGAGGCTGTCTCAGAGGCCaagatggaaatttcaggggccCGGAAGGAGCTGCAGACTTACAGTCTAGAGCTCCAAGGTCTGGTCACTGCAAACATGTCCCTGGAGCAGAGCTTGGCAGAAGCCCATGCCCAGTCAAGCATGGGCGTGGCCGGGTACCAGGGTCAGATCTCCAGCTTGACGTCGGCCATCGAGGTGGCCAAAACTGACCTCCACAAGCAGATCATGGCCTACCAGGAGCTTCTGGACGTCAAGCTGGCTCTAGACGTGGAGATCTCCACTTACAGGACCCTGCTGGAAGGAGACCACCTCAAATTACCTGAGACATCCGGATTTACAACATCTTCCTACAGTTTCTCGGctggaggtggaggagggggaataCAAGTTAAAGAGATCATAACAGAACACACAGAGACCTCCCTGATCTCTGAAACCGCATCCGCAGACTCTGAATCCACCTGATTCCACCAGGGTACCTCTGGAACGTTGGACGTTCAGATGCTCAAGCAACTCTTTTAacctaaaccccccccccccccccccaccccccccccccc
>XR_005040261.1
tggaggtggtggtggtggaggatatGGTGGAGGTTATGGTGGAGGATATGGTGGAGGCGGAGGTTATGGTGGAGGTTATGGTGGAGGttatggtggaggtggaggttatGGGGGTGGAGCCCTGATGGCCAGTCCTGCCTTCGCTATGGGACGCACCATGGCAGCAGGGGGGATCGGTGGCGGGTCGGCCATGGCATTGGGTACCTCTCTGGGCCCAGCATTGGCTCCTATGCGGTCCCGGCAGGCAGAGAAGAACATGTTGTCCGGCCTCAACGAACGTTTCTCCTCGTACATGGGCAAAGTGAGAGTCCTCCAGCAGGAGAACGCCATCCTGGAGGCCAGACTGTCCCAGTTGTCGGGGGGTGCGGACATGGGGTCTCCAgagtcctccaccaccaccacagcggAGTACGAGGCTCAGCTCAGCGAGTACCGTGTTGCCCTGGAGACGCTCACCCTGGACACCATCAAACTGGAGATCGAGCTGGACAACGTTCGTGGCACTGCCCACGAACTCAAGGCCAAGTTTGACTTTGAGCAAGGTGTGAAGTTTCAGCTGGACTCTGACATTTCAGCTATGAAGAAGgacatagatTTGGCATCTGAACTACGCATTGATTTGGACGCCAAGTACTCCAGCTTGAAGGACGAACTGGACTTTGTCAGCAAGACGCAGGAAGAGGAATTGTCCACTCTGCAGTCCAAACTGGGCACCACGTCTATGGACACGTCCGTGTCCATGATCGAGGTTGACACGGGCAAGTCCTTTGACATCTCCACCGCTCTCAACAAGATCAGGCTGGAGTACGAGAAGTCTGTACAGCAACACAGAGATGAGGCGGACGCCTACTACAAACTGAAGaTGGAAGAGATACAGACCGCTACCGCCAAGAGTTCAGAGGCTGTCTCAGAGGCCaagatggaaatttcaggggccCGGAAGGAGCTGCAGACTTACAGTCTAGAGCTCCAAGGTCTGGTCACTGCAAACATGTCCCTGGAGCAGAGCTTGGCAGAAGCCCATGCCCAGTCAAGCATGGGCGTGGCCGGGTACCAGGGTCAGATCTCCAGCTTGACGTCGGCCATCGAGGTGGCCAAAACTGACCTCCACAAGCAGATCATGGCCTACCAGGAGCTTCTGGACGTCAAGCTGGCTCTAGACGTGGAGATCTCCACTTACAGGACCCTGCTGGAAGGAGACCACCTCAAATTACCTGAGACATCCGGATTTACAACATCTTCCTACAGTTTCTCGGctggaggtggaggagggggaataCAAGTTAAAGAGATCATAACAGAACACACAGAGACCTCCCTGATCTCTGAAACCGCATCCGCAGACTCTGAATCCACCTGATTCCACCAGGGTACCTCTGGAACGTTGGACGTTCAGATGCTCAAGCAACTCTTTTAacctcccctatgCCCCACTTTACCTGATTTATAGACTACACAATAAACATTGCATCTTACACCTGACCCCCTGCTCATTTATGTTGGCTCTGTTACATTATAAAGTCTTGGATATGTTATTATAA

Function

NR:

description
PREDICTED: thread biopolymer filament subunit gamma-like isoform X1

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966843.1 False 1547 mRNA 0.57 9 36474132 36481456
XR_005040261.1 True 1541 mRNA 0.54 10 36474224 36481583

Neighbor

gene id symbol gene type direction distance location
afg3l2 afg3l2 coding upstream 136653 36313732 ~ 36337479 (+)
LOC118944825 NA coding upstream 222397 36230059 ~ 36255133 (+)
ubtfl ubf1 coding upstream 276694 36178766 ~ 36197438 (+)
LOC110509101 LOC106597086 coding upstream 296052 36108626 ~ 36178080 (+)
riok1 riok1 coding upstream 434870 36028547 ~ 36039262 (+)
LOC110509110 LOC106597311 coding downstream 9906 36491489 ~ 36495849 (+)
LOC110509112 LOC106597339 coding downstream 41310 36522754 ~ 36528580 (+)
LOC110509114 LOC106597346 coding downstream 88083 36569666 ~ 36576319 (+)
dsela LOC106597370 coding downstream 114516 36596099 ~ 36602659 (+)
trnas-uga-108 NA coding downstream 159457 36641040 ~ 36641121 (+)
G2132636 NA non-coding upstream 33936 36439996 ~ 36440196 (+)
G2132635 NA non-coding upstream 34336 36439420 ~ 36439796 (+)
G2132529 NA non-coding upstream 35281 36438526 ~ 36438851 (+)
G2132533 NA non-coding upstream 35844 36437970 ~ 36438288 (+)
G2132518 NA non-coding upstream 68603 36400642 ~ 36405529 (+)
G2132520 NA non-coding downstream 1680 36483263 ~ 36484157 (+)
G2132675 NA non-coding downstream 25006 36506589 ~ 36511445 (+)
G2132684 NA non-coding downstream 58823 36540406 ~ 36541413 (+)
G2132700 NA non-coding downstream 85743 36567326 ~ 36568360 (+)
G2133132 NA non-coding downstream 125342 36606925 ~ 36607179 (+)
G2132611 LOC100380659 other upstream 104165 36365556 ~ 36369967 (+)
G2132519 LOC100380659 other upstream 109138 36339094 ~ 36364994 (+)
LOC110508289 LOC106597230 other upstream 499000 35973386 ~ 35975132 (+)
G2132291 NA other upstream 773897 35699846 ~ 35700235 (+)
G2131933 NA other upstream 1381098 35091699 ~ 35093034 (+)
G2133551 NA other downstream 557070 37038653 ~ 37038924 (+)
G2134356 NA other downstream 1487520 37969103 ~ 37969465 (+)
G2134434 NA other downstream 1641813 38123396 ~ 38143819 (+)
LOC110508247 LOC106596897 other downstream 2044092 38292386 ~ 38526926 (+)

Expression


Co-expression Network