LOC110509110 (LOC106597311)


Basic Information

Item Value
gene id LOC110509110
gene name LOC106597311
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36491489 ~ 36495849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590079.2
GAAACCTTTATAAGCCTCTGGAGAGCAAACAGTTGCCAGACAGTTCTCTAAAGCAACTCCGTGATAAGGAAGCAACCAACAAGCATCTTGAATTTAAGCGCCTGTTTGACATCTCACTAGCAGAGAACAACTATGCCAGTTATAGGTGACATGGTGACTTCACCAATGGATTCAGAGGTGTACGACTACGACTCCAGCTTCACCCCTACGGTTGGTGAGGATGATGTGGATAACTTTATGTGTGACAAATCTGCCGTTAGGGCTTTCAGAGGCCAGTATGAACCACCTCTCTACTGGTCCATTGTCATCCTGGGAGGCCTGGGTAACCTGACCGTGGTGTGGATCTACCTGCACTTCCGCCAGCGTCTCAAGACCATGACCGATATCTACCTGTTGAACCTAGCTGTGGCCGACCTCTTCTTCTTGGGCACTCTACCCTTATGGGCCGTGGAGGCCAACCAGGGATGGAGCTTCGGCTTGGGCCTCTGCAAGGTCACCTCTGCCTTCTACAAGATCAACTTCTTCAGCAGCATGCTGCTGCTTACCTGCATCAGTGTCGATCGCTACGTGGTCATCGTCCAGACCACCATGGCCCAGAATTCCAAGAGACAGCGGCTGAGCTGCAGCAAGTTCGTGTGCGCCTGCGTCTGGCTCCTGGCCGTGTTGTTGGCCCTGCCCGAGTTCATGTTCGCCAACGTCAAGGAGCTGGATGGCCAGTTCTACTGCACCATGGTCTACTGGAGTAACCAGAACAACCGCACCAAgatcctggtcctggggcttcAGATCTGCATGGGCTTCTGCCTGCCCCTCCTGGTGATGGTGTTCTGCTACGCCGGCATCATCCGCACCCTGCTCAAAACCCGCAACTTCAAGAAGCACAAGGCGCTGCGCGTGAtcatggtggtggtggctgtGTTTGTCCTCTCCCAGTTGCCATATAACAGCGTGCTGGTGGTGGAGGCCACCAAGGCGGTCAACAACACCGGAATGGACTGCGGGGCGGAAAAGCGTTTCGACGTGGCAGGCCAGGTACTGAAGAGCCTGGCCTACATGCATGCCTGCCTCAACCCCTTCCTTTATGTATTTGTGGGCGAACGCTTCCGCAGAGACGTCCTCAAGCTTATCCGCATCTACCACTGCTGTCCGGCCCAGGGGATACTCAGCAAGATCCAGGGAGGACCTGGCCGCTCATCGGTCATGTCCGATACGGACACCACACAGGCACTCTCGCTTTGAAGGCACAGTCATAGTACAACCTTTTGCGTGCGACCAGAAGTCCCTCATAACAATCGAGGGGCTGTGCAACCATGCTCTGTTCCACAATGCCATGTCTGGTAACGGAAAGGTCTGGTAACGAAAAGACAAACCAATATGGCTAACAGTCCCAGTGAGAGAGGTTGTACTGTCGTCGTCgtcgcaccccccccccctcccccggttGCCTACTCTTGCATCAGACTTAGACTTCTTTGGTTATCTGACCATGTCTGAGGCTGAGGCAGTGACATGGGGAGAAGAGGTCCCTTTCTGAGAGCTGGAGATACTTTTGGCTCTTGTGTACGTTGCTGAAAGCATTGGTCATGATGGGACTCTTCCTTTGGCTGGTCTAAAGACCTTCTCAGTtttagctgatgaccacaaaggCTGGACAGTCGAAGTCTGGTTGAGGGTTTGTGTTTGACGATTCCAGTGATGGGAAAAGAGCTAACCATGACAGCATTGGGCCTGTACTGGTACCATGCATTTTCATTGGTCTTTATGGTTCTGTAAAGTCAGCCGGGCTGTTTTGTGCCTTGTTATTGTTGCATTTGTTTAGAAAGTATAGAGATGGGAAAGAGAAAACACGTATTTTCTTTACAATGATGGTTTCTGTGACAGAATCTCCATTGTGGGCAAGTGcgccctctatccatctctatatTATAAAGTTAATTGGCAATATTAACTAATATTGATATTAGTTCATCAATCTCTTTGGTCGGACCGTATCAATGAGCCGATCAATTATTTGAGACACTTTCTAAGAAGGAAAGCCCTTATTTGTGACGAGTATGTTTAGCTTTCACAGTGCGAGTGAACAAGTGTCATAAACAAAAAAGTTGTATAAAATATCTTTGATCGTGACTGTAATGACTGTAAATAAACAatgcat

Function

NR:

description
C-C chemokine receptor type 9-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590079.2 True 2155 mRNA 0.50 3 36491489 36495849

Neighbor

gene id symbol gene type direction distance location
zgc:136930 LOC106597301 coding upstream 9906 36474132 ~ 36481583 (+)
afg3l2 afg3l2 coding upstream 154010 36313732 ~ 36337479 (+)
LOC118944825 NA coding upstream 239754 36230059 ~ 36255133 (+)
ubtfl ubf1 coding upstream 294051 36178766 ~ 36197438 (+)
LOC110509101 LOC106597086 coding upstream 313409 36108626 ~ 36178080 (+)
LOC110509112 LOC106597339 coding downstream 27044 36522754 ~ 36528580 (+)
LOC110509114 LOC106597346 coding downstream 73817 36569666 ~ 36576319 (+)
dsela LOC106597370 coding downstream 100250 36596099 ~ 36602659 (+)
trnas-uga-108 NA coding downstream 145191 36641040 ~ 36641121 (+)
trnas-cga-34 NA coding downstream 146090 36641939 ~ 36642020 (+)
G2132520 NA non-coding upstream 7332 36483263 ~ 36484157 (+)
G2132636 NA non-coding upstream 51293 36439996 ~ 36440196 (+)
G2132635 NA non-coding upstream 51693 36439420 ~ 36439796 (+)
G2132529 NA non-coding upstream 52638 36438526 ~ 36438851 (+)
G2132533 NA non-coding upstream 53201 36437970 ~ 36438288 (+)
G2132675 NA non-coding downstream 10740 36506589 ~ 36511445 (+)
G2132684 NA non-coding downstream 44557 36540406 ~ 36541413 (+)
G2132700 NA non-coding downstream 71477 36567326 ~ 36568360 (+)
G2133132 NA non-coding downstream 111076 36606925 ~ 36607179 (+)
G2133149 NA non-coding downstream 133731 36629580 ~ 36629869 (+)
G2132611 LOC100380659 other upstream 121522 36365556 ~ 36369967 (+)
G2132519 LOC100380659 other upstream 126495 36339094 ~ 36364994 (+)
LOC110508289 LOC106597230 other upstream 516357 35973386 ~ 35975132 (+)
G2132291 NA other upstream 791254 35699846 ~ 35700235 (+)
G2131933 NA other upstream 1398455 35091699 ~ 35093034 (+)
G2133551 NA other downstream 542804 37038653 ~ 37038924 (+)
G2134356 NA other downstream 1473254 37969103 ~ 37969465 (+)
G2134434 NA other downstream 1627547 38123396 ~ 38143819 (+)
LOC110508247 LOC106596897 other downstream 2029826 38292386 ~ 38526926 (+)

Expression


Co-expression Network