c28h7orf25 (cssa03h7orf25)


Basic Information

Item Value
gene id c28h7orf25
gene name cssa03h7orf25
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 37438032 ~ 37442898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590089.2
GTAGACCTACTTCAACTCCAAGGTAGATGGCGACAGAGGTATTTTTTCCCCACTGTTTCACTGCATTCTGCTTGATATGAGCAGAGCGCGACCACCGACCAGACAGCTGAGAGAGGCGGACAAGCACCGTCACCGGGCCCGGGGTACACGTATCAAGGAATAATGCACCGAAGATGGCCGCCACACACTCCATGCTGCAGGAGCGTATCCAGGTGGCCCAAGAGCTGCTCAAGCGTGTGGACCAGCTCTGTGCGAGGCAGGTGCGCGATGTGGAGGGCCGGGCCAAGCTCTGCAGCAAGCTGCGAGCCGAGCTCAAGTTCCTGACCAAGGTGGAGGCGGGCAAGGTGCTCATCAAGGAGTCCCACCTGCAGAGCACCAACCTCACCCACCTGAAGGCCATTGTGGAGTCGGCGGAGTCACTGGAGATGGTGGTGAGCGTGCTGCATGTGTTCGCCTACGAGGACGCCGGCGGCACCAAGCAGACGCTGGTGGTGGACGTGGTGGCCAACGGCGGGCACACCTGGGTCAAGGCTATTGGGCGCAAGGCAGAGGCACTGCACAACATCTGGCAGGGTCGGGGCCAGTACGGCGACAAGAGTGTGGTGGAGCAAGCTGAGGACTTCCTGCAGGCCAGCCGCCAGCAGCCTGTGCAGTACAGCAACCCACACATTATCTTTGCCTTCTACAATGGCGTCTCCAGCCCAATGGCCGACCGCCTGAGAGAGATTGGCATCTCGGTGCGCGGGGACATCGTGGCGGTAAACTTGGTGATGGCGGAGGAGGAAGGAagcgaggaggaagagggagagggagcaaacAAGGAGGGTATGGAACGCTGCTACGAAGAGGAAGAGCGAGAAGGCAAGGCAGCGGAAGATGAGGAAGACGTTGAAAACTTTGTCGAAGAAGAAGACGACGCAGAAGATGTCGAGCACACGCGAGTTGACCGCGACACCATCGTGGCCAGCCTGGCATTCCCCACCGGGGTCAAGGTAGATGTGTGCCGGCGGGCCAACCTGGACATCACTACACTCATCACGTACGTGTCGTCACTGAGCCACGGCCACTGCCGCTTGGCCTTCAAGGAGCAGGTGCTGACTGAGCAGGCAGCCCAGGAGCGTCAGGACAAGGTCCTCCCTCGCCTCCAGGAGTTCATGGCGGGCAAGGAGCTGTACGCGTGCCAGTCGGCCGTAAACGACTTCCGCGTCATCCTGGACACGCTCGGCGGCCCCGGCGAGAAGGCGCGCGCCGATGAGCTGCTGAGGCGGCTACGGGTGGTACCCGACCAGCCGTCGGAGCGCACCCAGCGCCTCACTGCCAGCTCCAAGGTGAACCCCCGCTCGCTCATGATTTTCGGCACGGGCGACACACTACGGGCAGTCACAATGACGGCGAACAGTGGCTTTGTGAGGGCGGCGGCCAATCAGGGCGTGCGGTATAGCGTGTTCATACACCAACCGCGCGCCTTGACGGAGGGCAAGGAGTGGAGGGCCACGCccatatgagagagggagaactaaCACCCCCACAGCGGCAGGAGGAAGAAGACTGATGATGAGCGAAGGGCTCCGACAGCGAACAGGAAGGATAAAATTAAGGAAGGAGACAATGTTTGTGGAATGTACCACTGAACAGACATTAATTAAAGGGGTGTGGAATATACCACTGAAGAGTAATTAAATGGGTTGGGTGACTGCCAGAACAGTGAACTCTCTTCTTTTTCTTTTTTGGGGggcggggaggggaggggagggagacaaaATATATATCACAGCTTTTTTTGCTATGTGTCACTGAAATGTAAAGGCATTGTGCTCAGTTGAAAAACCACTACTGGTTTAGTTTAACACGCAGTCGGTACAGGAGCATTCTTTTTGCAACAACTGCAGACATTGGTGATAGTTGTTGTGTAGCCTATACCGTATATGCAAAAATAGTTATTGATATGATGAAATATCAGCTTATTGTATTTTagggcaatttaaaaaaaatataaaaaaaacagctTTGGCCCAATGTGCTGAGGGTGAAGTATATTTTGTTTTATTGTATTGCAAGTCTGAATTACATGTGAATAAAGcatctctaaaaaaaaaaa
>XM_021590088.2
AGAGGTATTTTTTCCCCACTGTTTCACTGCATTCTGCTTGATATGAGCAGAGCGCGACCACCGACCAGACAGCTGAGAGAGGCGGACAAGCACCGTCACCGGGCCCGGGGTACACGTATCAAGGTAGCTGCAACGCAGCATAGTAATTTACCGGCTTTTTTTGACCGAATAATGCACCGAAGATGGCCGCCACACACTCCATGCTGCAGGAGCGTATCCAGGTGGCCCAAGAGCTGCTCAAGCGTGTGGACCAGCTCTGTGCGAGGCAGGTGCGCGATGTGGAGGGCCGGGCCAAGCTCTGCAGCAAGCTGCGAGCCGAGCTCAAGTTCCTGACCAAGGTGGAGGCGGGCAAGGTGCTCATCAAGGAGTCCCACCTGCAGAGCACCAACCTCACCCACCTGAAGGCCATTGTGGAGTCGGCGGAGTCACTGGAGATGGTGGTGAGCGTGCTGCATGTGTTCGCCTACGAGGACGCCGGCGGCACCAAGCAGACGCTGGTGGTGGACGTGGTGGCCAACGGCGGGCACACCTGGGTCAAGGCTATTGGGCGCAAGGCAGAGGCACTGCACAACATCTGGCAGGGTCGGGGCCAGTACGGCGACAAGAGTGTGGTGGAGCAAGCTGAGGACTTCCTGCAGGCCAGCCGCCAGCAGCCTGTGCAGTACAGCAACCCACACATTATCTTTGCCTTCTACAATGGCGTCTCCAGCCCAATGGCCGACCGCCTGAGAGAGATTGGCATCTCGGTGCGCGGGGACATCGTGGCGGTAAACTTGGTGATGGCGGAGGAGGAAGGAagcgaggaggaagagggagagggagcaaacAAGGAGGGTATGGAACGCTGCTACGAAGAGGAAGAGCGAGAAGGCAAGGCAGCGGAAGATGAGGAAGACGTTGAAAACTTTGTCGAAGAAGAAGACGACGCAGAAGATGTCGAGCACACGCGAGTTGACCGCGACACCATCGTGGCCAGCCTGGCATTCCCCACCGGGGTCAAGGTAGATGTGTGCCGGCGGGCCAACCTGGACATCACTACACTCATCACGTACGTGTCGTCACTGAGCCACGGCCACTGCCGCTTGGCCTTCAAGGAGCAGGTGCTGACTGAGCAGGCAGCCCAGGAGCGTCAGGACAAGGTCCTCCCTCGCCTCCAGGAGTTCATGGCGGGCAAGGAGCTGTACGCGTGCCAGTCGGCCGTAAACGACTTCCGCGTCATCCTGGACACGCTCGGCGGCCCCGGCGAGAAGGCGCGCGCCGATGAGCTGCTGAGGCGGCTACGGGTGGTACCCGACCAGCCGTCGGAGCGCACCCAGCGCCTCACTGCCAGCTCCAAGGTGAACCCCCGCTCGCTCATGATTTTCGGCACGGGCGACACACTACGGGCAGTCACAATGACGGCGAACAGTGGCTTTGTGAGGGCGGCGGCCAATCAGGGCGTGCGGTATAGCGTGTTCATACACCAACCGCGCGCCTTGACGGAGGGCAAGGAGTGGAGGGCCACGCccatatgagagagggagaactaaCACCCCCACAGCGGCAGGAGGAAGAAGACTGATGATGAGCGAAGGGCTCCGACAGCGAACAGGAAGGATAAAATTAAGGAAGGAGACAATGTTTGTGGAATGTACCACTGAACAGACATTAATTAAAGGGGTGTGGAATATACCACTGAAGAGTAATTAAATGGGTTGGGTGACTGCCAGAACAGTGAACTCTCTTCTTTTTCTTTTTTGGGGggcggggaggggaggggagggagacaaaATATATATCACAGCTTTTTTTGCTATGTGTCACTGAAATGTAAAGGCATTGTGCTCAGTTGAAAAACCACTACTGGTTTAGTTTAACACGCAGTCGGTACAGGAGCATTCTTTTTGCAACAACTGCAGACATTGGTGATAGTTGTTGTGTAGCCTATACCGTATATGCAAAAATAGTTATTGATATGATGAAATATCAGCTTATTGTATTTTagggcaatttaaaaaaaatataaaaaaaacagctTTGGCCCAATGTGCTGAGGGTGAAGTATATTTTGTTTTATTGTATTGCAAGTCTGAATTACATGTGAATAAAGcatctctaaaaaaaaaaa

Function

NR:

description
UPF0415 protein C7orf25 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590089.2 False 2098 mRNA 0.55 3 37438032 37442898
XM_021590088.2 True 2107 mRNA 0.55 3 37438066 37442898

Neighbor

gene id symbol gene type direction distance location
LOC118944833 NA coding upstream 455772 36977174 ~ 36982260 (+)
trnas-cga-50 NA coding upstream 750212 36687739 ~ 36687820 (+)
trnas-uga-130 NA coding upstream 750371 36687580 ~ 36687661 (+)
trnas-cga-49 NA coding upstream 751389 36686562 ~ 36686643 (+)
trnas-cga-48 NA coding upstream 752983 36684968 ~ 36685049 (+)
LOC110509119 rala coding downstream 4841 37447739 ~ 37470801 (+)
LOC110509126 LOC106596905 coding downstream 182600 37625498 ~ 37650985 (+)
LOC110509125 LOC106596905 coding downstream 231920 37674818 ~ 37694631 (+)
LOC110509128 LOC100136478 coding downstream 768378 38211276 ~ 38229238 (+)
LOC110508247 LOC106596897 coding downstream 849488 38292386 ~ 38526926 (+)
G2133829 NA non-coding upstream 114151 37323560 ~ 37323881 (+)
G2133826 impa1 non-coding upstream 118713 37314721 ~ 37319319 (+)
G2133780 NA non-coding upstream 180825 37256782 ~ 37257207 (+)
G2133674 NA non-coding upstream 289513 37146751 ~ 37148519 (+)
G2133559 NA non-coding upstream 393678 37043943 ~ 37044354 (+)
G2133932 NA non-coding downstream 56973 37499871 ~ 37500080 (+)
G2134039 NA non-coding downstream 74379 37517277 ~ 37517592 (+)
G2134065 NA non-coding downstream 128286 37571184 ~ 37571446 (+)
G2134066 NA non-coding downstream 129964 37572862 ~ 37573277 (+)
G2134073 NA non-coding downstream 136271 37579169 ~ 37584695 (+)
G2133551 NA other upstream 399108 37038653 ~ 37038924 (+)
LOC110509112 LOC106597339 other upstream 912617 36522754 ~ 36528580 (+)
G2132611 LOC100380659 other upstream 1068065 36365556 ~ 36369967 (+)
G2132519 LOC100380659 other upstream 1073038 36339094 ~ 36364994 (+)
LOC110508289 LOC106597230 other upstream 1462900 35973386 ~ 35975132 (+)
G2134356 NA other downstream 526205 37969103 ~ 37969465 (+)
G2134434 NA other downstream 680498 38123396 ~ 38143819 (+)
LOC118944840 LOC106596771 other downstream 1346644 38789495 ~ 39333323 (+)
G2135186 NA other downstream 1404582 38847480 ~ 38848317 (+)

Expression


Co-expression Network