LOC110509133 (LOC106592421)


Basic Information

Item Value
gene id LOC110509133
gene name LOC106592421
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 38657804 ~ 38673221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966952.1
ATATATCAGGCGGTCCACATCTTTCCACTCTCACACTGTGGGACAAACGTGGACAACAAACGGTGGACAAAATGTCGCAGTACTCAGGCAAGATCTGTTTCTACGAGGGGAAATGCTTCACGGGCAGGAAGCTGGAGATCTGCGGTGACTGTGATAACTTCCAGGACCGCGGATTCATGAACCGCGTCAACTCCATCCGCGTGGAGAGCGGCGCCTTCGTCTGCTTCGACCATCCCGACTTCAAGGGCCAGCAGTACATGCTGGAGCACGGAGATTACCCCGAGTTTCAGAGATGGAATGCCCACAATGATCACATGGGCTCCTGCAGACCTATCAGGATGcaTGGAGAACACTACAGGATGGAGTTGTTTGAGGGAGCTGACTTTGCTGACcagtgtgttgaggtgtgtgaTGACGTGCCCTTCCTGCAGGGACGCGGTCTGACCAAGAACTGCATCAACTCTCTGAAGGTTTACGGAGACGGAGCCTGGGTGCTTTATGAGGAACCTAACTTCCGCGGCCGTATGTATATcgtggagagaggagactactCTAGTCACGTGGAGTGGCAGGCCCAGAACCCCAACATCCAGTCCATCCGCAGGGTGGTCAACTACTTCTAAACCACGACCCCTTGACCTCTGACCTTAGTCCGAGGGGTCAAACCTGGGATGTCGAACAGTAAAGGGGCACAACTTTACGGAAAACGTTCAGATGACACAGTCAGTTCTATTCGTGCCATTTGCATCTGTAACATTCTGACCGTGTCACCTCACTGAATGTGATGACATCCCAGGTTAGAGGATACATACATAAATCATACATACATGGATTACAAGGCGGAGCTTGGCGAGGTGTAGTCAACAACGTTTACATCACAGGGCACGGAACTGTTTATTTTATCTTCTAATCCAGTtgtaaaattatataaaaaagaCAGAACCAGAA

Function

NR:

description
PREDICTED: gamma-crystallin N-B-like

GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966952.1 True 948 mRNA 0.50 4 38657804 38673221

Neighbor

gene id symbol gene type direction distance location
LOC110509132 LOC106596853 coding downstream 13054 38574717 ~ 38644750 (-)
LOC110509127 LOC106596915 coding downstream 661582 37766370 ~ 37996222 (-)
LOC110509123 LOC106596905 coding downstream 1052924 37578708 ~ 37645494 (-)
inhbab inhba coding downstream 1096594 37546812 ~ 37561210 (-)
LOC110509120 mplkip coding downstream 1184256 37471456 ~ 37473548 (-)
LOC118944870 LOC106596806 coding upstream 12054 38685275 ~ 38702608 (-)
LOC110509137 LOC105025287 coding upstream 904996 39577116 ~ 39621092 (-)
LOC118944811 NA coding upstream 906473 39579694 ~ 39582551 (-)
rab31 rab31 coding upstream 963242 39633741 ~ 39650366 (-)
LOC118944836 ralbp1 coding upstream 1041407 39714554 ~ 39717684 (-)
G2135040 NA non-coding downstream 84878 38572524 ~ 38572926 (-)
G2135059 NA non-coding downstream 95148 38559618 ~ 38562656 (-)
G2135045 NA non-coding downstream 114644 38542529 ~ 38543160 (-)
G2135031 NA non-coding downstream 149721 38500884 ~ 38508083 (-)
G2135013 NA non-coding downstream 201966 38454745 ~ 38455838 (-)
G2135071 NA non-coding upstream 8345 38681566 ~ 38683375 (-)
G2135104 NA non-coding upstream 20320 38693541 ~ 38694191 (-)
G2135107 NA non-coding upstream 27382 38700603 ~ 38701199 (-)
G2135111 NA non-coding upstream 30412 38703633 ~ 38704058 (-)
G2135120 NA non-coding upstream 67812 38741033 ~ 38741619 (-)
G2135034 LOC106596897 other downstream 130884 38519571 ~ 38526920 (-)
G2134625 NA other downstream 527397 38128129 ~ 38130407 (-)
LOC110509111 LOC106597319 other downstream 2100351 36526794 ~ 36557532 (-)
G2133007 NA other downstream 2394474 36263002 ~ 36263330 (-)
G2135837 NA other upstream 332240 39005461 ~ 39006050 (-)
LOC110509145 ankrd12 other upstream 1130574 39778552 ~ 39829207 (-)
G2136189 NA other upstream 1269932 39943153 ~ 39945834 (-)
LOC110508256 LOC106596607 other upstream 1317342 39973367 ~ 40103148 (-)
G2136243 NA other upstream 1378418 40051639 ~ 40121899 (-)

Expression


Co-expression Network