LOC110509148 (LOC106596679)


Basic Information

Item Value
gene id LOC110509148
gene name LOC106596679
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39719697 ~ 39763225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966757.1
GCATTTTTTTCACCGCTTCCCACACCACGTTCGCGCCGCCCAACGCAGATCAgcacgatctgcgtcagaaataggactAATttatattttagcccttggcaacgcagaagCGCGTTGGCGCGCGCGCAATAATTGACTAACAtggatttttaaatgtattttgcgacgcttgcgtgtccggtctggtcagcatgttaccaCTCAAATGCGTCCTATGTGTCCAACTAACTAACGTACCAAGCTGCTGGACTACTCTGGATGTGAAAATGAACGAGTCAGGTGGACAGACACACGTTGCGTTGCTGTGTGTTGAGCCGACCATCAGAATGAGGCCTGGTCAGCTGTGTGTTCTGGTCCCAGCTTCCactaccctcctcttcctcctggtcCTGTCAGGACCTTCTCAGACCAGCGCCTGTAACAAGGCCCTCTGCGCCTCCGACGTCAGCAAGTGCctcatacaggagcTGTGTCAGTGTCGTCCATCCGACGGGAACTGTTCATGTTGTAAAGAGTGTATGCTCTGTCTGGGGACACTGTGGGAGGACTGCTGTGACTGTGTTGGGATGTGTAACCCTAAGAACTACAGTGATACTCCAGCCAcctccaagagcacagtggaggAACTCCATCGACCAATCCCCTCGTTGTTCCGAGCCCTCACGGAGGGCGACGCCCCTATCAACATGATGGTGGTGTCCTTTCCCGTTGCCGAGGAACTATCTCACCATGAGAACCTGGTCTCTTTTCTAGAGACGCTTGACGACCAGCACCAGAACATATCGCTCCCCGCCAACAGCATCCACGGCAGCTACGACACTCAAGATAACATGTGCACGGTGGTCTACTTTGACGACTGCGTATCCATCCGCCAGTGTAAACTATACTGTGAGTCGATGGGAGGGTCTAAGTACCGCTGGTTCCACAACGCCTGCTGTCAGTGCATCGGCCCGGAGTGTCTGGACTACGGCAGCAAGGCTGTGAAGTGCATGAACTGTCTGTTCTGAAAACAGATGGTGGATGGATCCATGAACTGTCTGTTCTGAAAACTGATGGCTCCATGGTGGTGGAGACTGGCACCAAAAATATGGACCAAAACAATGGGTGGCTCCAAAGAGGGGCTAGACAATGCTGAAGCCTCCTCAAAAATAGCCTAGCCCcctccaaaaaaaaacattgttttagtACATCATATATGACAGGACCCCTTAGCTTCCCCCTTAGCTTCCCCCTTAGCTTCCCCCTTAGCTTCCCCAATGAAAAGTTTCTGGTGCCACTGCTGACCAAACATGAGAAGACTGACTGACAAGGTCCAATATTCATTGTAACCATCAGAGCTAGCTGACTGACTTTATCTCTGATGTGTGTTTTCTTTCATGAGAGTGAATGACGTCAAGTATTTACTGATggattgttttattattttattctgTGTATGTTGTATATTTTTtagatgtttaaaaaaaaaaaaaaatgtttttactagAGCTGTTTGTTGATAACGTTTGTTTTTTACAATAATCCTGCCAAATAAAATGTTTGACTTG
>XM_036966759.1
GCATTTTTTTCACCGCTTCCCACACCACGTTCGCGCCGCCCAACGCAGATCAgcacgatctgcgtcagaaataggactAATttatattttagcccttggcaacgcagaagCGCGTTGGCGCGCGCGCAATAATTGACTAACAtggatttttaaatgtattttgcgacgcttgcgtgtccggtctggtcagcatgttaccaCTCAAATGCGTCCTATGTGTCCAACTAACTAACGTACCAAGCTGCTGGACTACTCTGGATGTGAAAATGAACGGTGTGTCTTTAAGGCGCCCTATTGCCCTGTAGATAGATGTGTGTTGCTGTGGCAGAGAAACTGACGCCCGGGACCCTGTAGTCCACGTTATTATTCCATCCTGAACCGGCGAGGAAACTGGCGGCGTTGCGTTCGTAGGAGATACAGCCGTCAATCAAAATCAAACGTCCCAAACTATTGCAACTCTGTCGCGGTGGACAGACACACGTTGCGTTGCTGTGTGTTGAGCCGACCATCAGAATGAGGCCTGGTCAGCTGTGTGTTCTGGTCCCAGCTTCCactaccctcctcttcctcctggtcCTGTCAGGACCTTCTCAGACCAGCGCCTGTAACAAGGCCCTCTGCGCCTCCGACGTCAGCAAGTGCctcatacaggagcTGTGTCAGTGTCGTCCATCCGACGGGAACTGTTCATGTTGTAAAGAGTGTATGCTCTGTCTGGGGACACTGTGGGAGGACTGCTGTGACTGTGTTGGGATGTGTAACCCTAAGAACTACAGTGATACTCCAGCCAcctccaagagcacagtggaggAACTCCATCGACCAATCCCCTCGTTGTTCCGAGCCCTCACGGAGGGCGACGCCCCTATCAACATGATGGTGGTGTCCTTTCCCGTTGCCGAGGAACTATCTCACCATGAGAACCTGGTCTCTTTTCTAGAGACGCTTGACGACCAGCACCAGAACATATCGCTCCCCGCCAACAGCATCCACGGCAGCTACGACACTCAAGATAACATGTGCACGGTGGTCTACTTTGACGACTGCGTATCCATCCGCCAGTGTAAACTATACTGTGAGTCGATGGGAGGGTCTAAGTACCGCTGGTTCCACAACGCCTGCTGTCAGTGCATCGGCCCGGAGTGTCTGGACTACGGCAGCAAGGCTGTGAAGTGCATGAACTGTCTGTTCTGAAAACAGATGGTGGATGGATCCATGAACTGTCTGTTCTGAAAACTGATGGCTCCATGGTGGTGGAGACTGGCACCAAAAATATGGACCAAAACAATGGGTGGCTCCAAAGAGGGGCTAGACAATGCTGAAGCCTCCTCAAAAATAGCCTAGCCCcctccaaaaaaaaacattgttttagtACATCATATATGACAGGACCCCTTAGCTTCCCCCTTAGCTTCCCCCTTAGCTTCCCCCTTAGCTTCCCCAATGAAAAGTTTCTGGTGCCACTGCTGACCAAACATGAGAAGACTGACTGACAAGGTCCAATATTCATTGTAACCATCAGAGCTAGCTGACTGACTTTATCTCTGATGTGTGTTTTCTTTCATGAGAGTGAATGACGTCAAGTATTTACTGATggattgttttattattttattctgTGTATGTTGTATATTTTTtagatgtttaaaaaaaaaaaaaaatgtttttactagAGCTGTTTGTTGATAACGTTTGTTTTTTACAATAATCCTGCCAAATAAAATGTTTGACTTG
>XM_036966758.1
TGCATTTTTTTCACCGCTTCCCACACCACGTTCGCGCCGCCCAACGCAGATCAgcacgatctgcgtcagaaataggactAATttatattttagcccttggcaacgcagaagCGCGTTGGCGCGCGCGCAATAATTGACTAACAtggatttttaaatgtattttgcgacgcttgcgtgtccggtctggtcagcatgttaccaCTCAAATGCGTCCTATGTGTCCAACTAACTAACGTACCAAGCTGCTGGACTACTCTGGATGTGAAAATGAACGGTGTGTCTTTAAGGCGCCCTATTGCCCTGTAGATAGATGTGTGTTGCTGTGGCAGAGAAACTGACGCCCGGGACCCTGTAGTCCACGTTATTATTCCATCCTGAACCGGCGAGGAAACTGGCGGCGTTGCGTTCGTAGGAGATACAGCCGTCAATCAAAATCAAACGTCCCAAACTATTGCAACTCTGTCGCGAGTCAGGTGGACAGACACACGTTGCGTTGCTGTGTGTTGAGCCGACCATCAGAATGAGGCCTGGTCAGCTGTGTGTTCTGGTCCCAGCTTCCactaccctcctcttcctcctggtcCTGTCAGGACCTTCTCAGACCAGCGCCTGTAACAAGGCCCTCTGCGCCTCCGACGTCAGCAAGTGCctcatacaggagcTGTGTCAGTGTCGTCCATCCGACGGGAACTGTTCATGTTGTAAAGAGTGTATGCTCTGTCTGGGGACACTGTGGGAGGACTGCTGTGACTGTGTTGGGATGTGTAACCCTAAGAACTACAGTGATACTCCAGCCAcctccaagagcacagtggaggAACTCCATCGACCAATCCCCTCGTTGTTCCGAGCCCTCACGGAGGGCGACGCCCCTATCAACATGATGGTGGTGTCCTTTCCCGTTGCCGAGGAACTATCTCACCATGAGAACCTGGTCTCTTTTCTAGAGACGCTTGACGACCAGCACCAGAACATATCGCTCCCCGCCAACAGCATCCACGGCAGCTACGACACTCAAGATAACATGTGCACGGTGGTCTACTTTGACGACTGCGTATCCATCCGCCAGTGTAAACTATACTGTGAGTCGATGGGAGGGTCTAAGTACCGCTGGTTCCACAACGCCTGCTGTCAGTGCATCGGCCCGGAGTGTCTGGACTACGGCAGCAAGGCTGTGAAGTGCATGAACTGTCTGTTCTGAAAACAGATGGTGGATGGATCCATGAACTGTCTGTTCTGAAAACTGATGGCTCCATGGTGGTGGAGACTGGCACCAAAAATATGGACCAAAACAATGGGTGGCTCCAAAGAGGGGCTAGACAATGCTGAAGCCTCCTCAAAAATAGCCTAGCCCcctccaaaaaaaaacattgttttagtACATCATATATGACAGGACCCCTTAGCTTCCCCCTTAGCTTCCCCCTTAGCTTCCCCCTTAGCTTCCCCAATGAAAAGTTTCTGGTGCCACTGCTGACCAAACATGAGAAGACTGACTGACAAGGTCCAATATTCATTGTAACCATCAGAGCTAGCTGACTGACTTTATCTCTGATGTGTGTTTTCTTTCATGAGAGTGAATGACGTCAAGTATTTACTGATggattgttttattattttattctgTGTATGTTGTATATTTTTtagatgtttaaaaaaaaaaaaaaatgtttttactagAGCTGTTTGTTGATAACGTTTGTTTTTTACAATAATCCTGCCAAATAAAATGTTTGACTTG
>TU2442800
TGTGGCAGAGAAACTGACGCCCGGGACCCTGTAGTCCACGTTATTATTCCATCCTGAACCGGCGAGGAAACTGGCGGCGTTGCGTTCGTAGGAGATACAGCCGTCAATCAAAATCAAACGTCCCAAACTATTGCAACTCTGTCGCGAGTCAGGTGGACAGACACACGTTGCGTTGCTGTGTGTTGAGCCGACCATCAGAATGAGGCCTGGTCAGCTGTGTGTTCTGGTCCCAGCTTCCactaccctcctcttcctcctggtcCTGTCAGGACCTTCTCAGACCAGCGCCTGTAACAAGGCCCTCTGCGCCTCCGACGTCAGCAAGTGCctcatacagg

Function

NR:

description
twisted gastrulation protein homolog 1-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966757.1 False 1547 mRNA 0.48 5 39719697 39763224
XM_036966759.1 False 1734 mRNA 0.49 5 39719697 39763224
XM_036966758.1 False 1741 mRNA 0.49 5 39719697 39763225
TU2442800 True 338 lncRNA 0.56 2 39760929 39762904

Neighbor

gene id symbol gene type direction distance location
LOC118944836 ralbp1 coding downstream 2013 39714554 ~ 39717684 (-)
rab31 rab31 coding downstream 69331 39633741 ~ 39650366 (-)
LOC110509137 LOC105025287 coding downstream 98605 39577116 ~ 39621092 (-)
LOC118944811 NA coding downstream 137146 39579694 ~ 39582551 (-)
LOC118944870 LOC106596806 coding downstream 1017089 38685275 ~ 38702608 (-)
LOC110509145 ankrd12 coding upstream 15327 39778552 ~ 39829207 (-)
ndufv2 ndufv2 coding upstream 80086 39843311 ~ 39869936 (-)
LOC110508256 LOC106596607 coding upstream 210142 39973367 ~ 40103148 (-)
LOC110509140 LOC106596615 coding upstream 352176 40115401 ~ 40127201 (-)
LOC110508253 LOC106591876 coding upstream 405186 40168411 ~ 40317511 (-)
G2136103 NA non-coding downstream 5865 39651685 ~ 39713832 (-)
G2136107 NA non-coding downstream 12629 39694223 ~ 39707068 (-)
G2136105 NA non-coding downstream 29667 39667040 ~ 39690030 (-)
G2136140 NA non-coding upstream 33782 39797007 ~ 39797356 (-)
G2136156 NA non-coding upstream 70454 39833679 ~ 39834325 (-)
G2136161 NA non-coding upstream 83884 39847109 ~ 39847932 (-)
G2136162 NA non-coding upstream 84233 39847458 ~ 39847851 (-)
G2135837 NA other downstream 713647 39005461 ~ 39006050 (-)
G2135034 LOC106596897 other downstream 1192777 38519571 ~ 38526920 (-)
G2134625 NA other downstream 1589290 38128129 ~ 38130407 (-)
LOC110509127 LOC106596915 other downstream 1779854 37766370 ~ 37996222 (-)
LOC110509111 LOC106597319 other downstream 3162244 36526794 ~ 36557532 (-)
G2136189 NA other upstream 179928 39943153 ~ 39945834 (-)
G2136243 NA other upstream 288414 40051639 ~ 40121899 (-)
G2137086 NA other upstream 652078 40415303 ~ 40415540 (-)
G2136118 NA non-coding downstream 33081 39726011 ~ 39727848 (-)

Expression


Co-expression Network