LOC110509159 (LOC106596360)


Basic Information

Item Value
gene id LOC110509159
gene name LOC106596360
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 40752278 ~ 40758925 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966533.1
AGAAAAGACACGTGGTGAGATTCGCCATCAGCGCCAACCGCGTGCTCTCTCTTGCTGTGAGCCACTTCCTGTTCTGCTGTGAACCCGTGTGGAAGAAGGTGTTGTGACTTTAGGACTGATCAATCAAATTACTGACTCTCTCTTTACACAGATAAAGCCATGAACCAAGAGAAACTAGCCAAACTTCAGGCCCAAGTCCGGATAGGTGGAAAGGGAACAGCTCGCAGGAAGAAGAAGGTGGTTCACAGAACCGCAACAGCCGACGACAAAAAACTCCAGAGCTCCTTGAAGAAACTGGCAGTGAACAACATCGCTGGGATTGAGGAGGTGAACATGATAAAGTACGATGGCACGGTGATCCACTTCAACAACCCCAAGGTGCAGGCCTCTCTGTCCGCCAACACGTTTGCCATCACAGGCCACGCAGAGAACAAACAGCTGACAGAGATGCTCCCGGGCATCCTCAGCCAGCTGGGGGCAGACAGCTTCACCAGCCTTCGCAAACTGGCAGAGCAGTTCCCACGCCAAGTACTTGACAACAAAGCGATGTCGATCAGCAAACCAGAAGATATTGAAGAGGAGGACGATGTTCCAGaTCTTGTAGAAAACTTTGATGAAGCGTCAAAGAATGAAGCCAACTAATGAATCCAACTTCAGGCCCTTTTTACCCAGTACCCTCTGCCTTTCCTCAGTACCATCTATTCAGAACCCACTGGGTACCCCCCCCAATAACCCATCTTCTACCCAGTACACACATCTCTATCGTGTGGACTCAAAGTGGGATCTGTTCAGTAAGCTGTAACATGACTTACAGAATCTATCATGGAGAACAGATGAGTGTCAGAGCAGTCACCATTCCTATTCTCTCACATGGCCTCAATACACccagacctcctctctctctcatggcctCAATACACCccagacctcctctctctctcatggcctCAATACACCCcagacctccc

Function

NR:

description
transcription factor BTF3 homolog 4-like

GO: NA

KEGG:

id description
K01527 EGD1, BTF3; nascent polypeptide-associated complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966533.1 True 968 mRNA 0.50 6 40752278 40758925

Neighbor

gene id symbol gene type direction distance location
LOC118944846 NA coding downstream 1463 40748516 ~ 40750815 (-)
zfyve9a LOC106930947 coding downstream 11472 40684391 ~ 40740806 (-)
LOC118944865 NA coding downstream 144144 40605216 ~ 40608134 (-)
LOC118944871 NA coding downstream 152958 40597260 ~ 40599320 (-)
LOC110508251 gnal coding downstream 164346 40452316 ~ 40587932 (-)
LOC110508261 dnajb4 coding upstream 24681 40783606 ~ 40842867 (-)
LOC110509157 dnajb4 coding upstream 108354 40867279 ~ 40872210 (-)
ak5 LOC102787869 coding upstream 292146 41051071 ~ 41200160 (-)
LOC110509184 LOC103370426 coding upstream 518076 41277001 ~ 41391686 (-)
LOC118944905 NA coding upstream 773689 41532614 ~ 41532745 (-)
G2137217 NA non-coding downstream 11096 40740904 ~ 40741182 (-)
G2137215 NA non-coding downstream 25121 40725808 ~ 40727157 (-)
G2137211 NA non-coding downstream 31733 40712134 ~ 40720545 (-)
G2137212 NA non-coding downstream 35596 40714868 ~ 40716682 (-)
G2137235 NA non-coding upstream 30873 40789798 ~ 40790113 (-)
G2137249 NA non-coding upstream 85321 40844246 ~ 40848706 (-)
G2137070 NA non-coding upstream 103756 40862681 ~ 40863721 (-)
G2137265 LOC106569753 non-coding upstream 121844 40880769 ~ 40883372 (-)
G2137300 NA non-coding upstream 224746 40983671 ~ 40985567 (-)
G2137111 NA other downstream 276577 40472088 ~ 40475701 (-)
G2137086 NA other downstream 336738 40415303 ~ 40415540 (-)
G2136243 NA other downstream 630379 40051639 ~ 40121899 (-)
LOC110508256 LOC106596607 other downstream 755232 39973367 ~ 40103148 (-)
G2136189 NA other downstream 806444 39943153 ~ 39945834 (-)
G2137419 NA other upstream 501875 41260800 ~ 41261271 (-)
LOC110509166 LOC106596257 other upstream 871736 41630582 ~ 41641166 (-)
G2137555 NA other upstream 972789 41731714 ~ 41736389 (-)
G2137648 LOC106596196 other upstream 1051870 41810795 ~ 41814201 (-)
G2137814 LOC106597294 other upstream 1461997 42220922 ~ 42226965 (-)

Expression


Co-expression Network