LOC110509161 (rs8)


Basic Information

Item Value
gene id LOC110509161
gene name rs8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 41532971 ~ 41536197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590131.2
TTTCCAGGTTGCTGAACTGCATTTGGAGATATCCGAAGAAGAGCTGCTCTTACAATCTCGCGATATCTGACACCGTCAAACTTCCCCATGAGCCCTTGCGTGTTCTCTTTCTACCCGGCGCCTTAGAATGGGTATCTCTAGGGACAACTGGCATAAACGCCGCAAGACCGGCGGCAAACGAAAGCCCTACCACAAGAAGAGGAAGTATGAGCTGGGTCGCCCTCCTGCCAACACCAAGATTGGACCTCGGCGTATTCACACGGTGAGGACCCGCGGCGGTAACAAGAAGTACCGAGCTCTGAGGGTCGACGTGGGCAACTTCTCCTGGGGCTCTGAGTGCTGCACTCGTAAAACCAGGATCATTGATGTGGTGTACAACGCCTCTAACAACGAGTTGGTGAGAACCAAGACCTTGGTGAAGAACTGCATCGTTCTCGTCGACAGCCTGCCTTACAGGCAGTGGTATGAGGCCCACTTCGCCACTCCTCTGGGACGCAAGAAGGGAGCCAAGTTGactccagaggaggaggaggtgatcaACAAGAAGAGGTCGAAGAAGATTCAGAAGAAGTTTGATGAGCGCAAGAAGAACTGCAAGATCAGCCCTCTCCTGGAGGAACAGTTCATGCAGGGGAAACTCCTCGCCTGCATTGCCTCCAAGCCCGGCCAGTGCGGAAGGGTGGATGGCTACGTGTTGGAGGGCAAGGAGCTGGAGTTctacctgaggaaaatcaaagccAAGAAGGGCAAATAGATCTGCCGTTTTGATACGTCAATAAAAACACACATCCCACA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02995 RP-S8e, RPS8; small subunit ribosomal protein S8e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590131.2 True 795 mRNA 0.53 6 41532971 41536197

Neighbor

gene id symbol gene type direction distance location
LOC118944905 NA coding downstream 226 41532614 ~ 41532745 (-)
LOC110509184 LOC103370426 coding downstream 141285 41277001 ~ 41391686 (-)
ak5 LOC102787869 coding downstream 332811 41051071 ~ 41200160 (-)
LOC110509157 dnajb4 coding downstream 660761 40867279 ~ 40872210 (-)
LOC110508261 dnajb4 coding downstream 690104 40783606 ~ 40842867 (-)
si:ch211-106k21.5 LOC106596230 coding upstream 15793 41551990 ~ 41568745 (-)
znf414 znf414 coding upstream 51102 41587299 ~ 41626840 (-)
LOC110509166 LOC106596257 coding upstream 94385 41630582 ~ 41641166 (-)
LOC110508267 LOC106596213 coding upstream 370585 41906782 ~ 42137364 (-)
cfap410 cunh21orf2 coding upstream 824550 42360747 ~ 42368140 (-)
G2137540 NA non-coding downstream 26379 41505516 ~ 41506592 (-)
G2137507 NA non-coding downstream 79345 41453115 ~ 41453626 (-)
G2137495 NA non-coding downstream 106061 41414495 ~ 41426910 (-)
G2137453 NA non-coding downstream 207480 41323830 ~ 41325491 (-)
G2137451 NA non-coding downstream 214883 41317864 ~ 41318088 (-)
G2137576 NA non-coding upstream 33547 41569744 ~ 41569993 (-)
G2137578 NA non-coding upstream 37203 41573400 ~ 41573613 (-)
G2137579 NA non-coding upstream 38527 41574724 ~ 41575011 (-)
G2137590 NA non-coding upstream 93021 41629218 ~ 41629553 (-)
G2137419 NA other downstream 271700 41260800 ~ 41261271 (-)
G2137111 NA other downstream 1057270 40472088 ~ 40475701 (-)
G2137086 NA other downstream 1117431 40415303 ~ 40415540 (-)
G2136243 NA other downstream 1411072 40051639 ~ 40121899 (-)
LOC110508256 LOC106596607 other downstream 1535925 39973367 ~ 40103148 (-)
G2137555 NA other upstream 195517 41731714 ~ 41736389 (-)
G2137648 LOC106596196 other upstream 274598 41810795 ~ 41814201 (-)
G2137814 LOC106597294 other upstream 684725 42220922 ~ 42226965 (-)
G2138294 LOC106594920 other upstream 813019 42349216 ~ 42351452 (-)

Expression


Co-expression Network