LOC110508267 (LOC106596213)


Basic Information

Item Value
gene id LOC110508267
gene name LOC106596213
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 41906782 ~ 42137364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966151.1
CCAGTCGTACAGAACACTCCACTCTGCTGTAGGACGTCTGTGTGTCAGTCACAACCCAACTGGGACCATGACAACCATCATGATAACAGTACTGATGCTCTTCATTCAAACCACCCTGGGGGCTCCTGAAACAGACGGTCCCTTCAACCTCTTCAATGCAGAAAGTGGCATTAGACAGGACCTGGCACGCTGGGTGTCAGGTGGACGTCTCTACTACACCAACAACAGGAAGTGTGCTGGGGTTTCTGGGAAGACAGAGGGTAGTACGCTGGTGTATTCTGACTGTGATGAGAAGAGCCTCCTCCAGCAGTGGGAGTGCAGTAATAACACACTGCTCACACTGAAAGGACAGACTCTGTACCTGCACATCAACGACAACAATGATCTGGTGCTGTCCAGAGACACGGGGCCTCGGAGTCGCTGGACCATCTCTGGAACAACGGACGGCCCCTGCTCGAGGACCCACAGAGAACTCTTTACCATCGAAGGAAACGCATTTGGGCGTCCCTGTCAGTTTCCTTTCCTGTACAAAGACCAATGGTATGGAGACTGCACCTTGGTAGACTCCTCTGTTAGACGGCTTTGGTGTGCCATTGAAACAAACTACCAAGACAATGAACTGTGGGGCAACTGTCCATCCAAATCTACGGAGCATTGGCATAAGAACCCGGTCACAGATGCATTCTACCAGGTGAACCTCCACTCTGCTCTGACCTGGCACCAGGCTCGGACCAGTTGCCAACAGCAGGGAGCAGACTTGGCCTCAATCACCGAACCCCTCGAGCAGACCTACTTAGCAGGCCTGTGTGGTAGGCTGCATGTGCCGCTGTGGACGGGGCTGAATGCTCTGGAACAGGACAGTGGGTGGCAGTGGATCAGTGGAAAGCCTCTCCGCTACTTCCGCTGGGACTCTGGTCATCCTCTCTCTGATCCTGGTCATATCTGTGGACTAGTCGACCCAGGTCAGCAGTCCTACTGGCAGAGCTCCCTGTGCTCCAAGAAACATGGCTACGTCTGTCAGAAAGACCCACCTACATCCCCCGTTCCCCCAGAAGTGACAGGTTACTGCTCCAGTCCGTGGATTCCCTACGCTGCCAGGTGCTACCTCCTCCAGCGTACCAAGAAGACCTGGACAGAGGCTCAGACGGAATGTCGGAAGGACGGAGGCGACCTGGCCAGCATCCACAACATTGAGCAGCACAGCTTTGTGATGTCACAGCTGGGATATGCGGCCGCTGACGAGCTGTGGATCGGGATGAACGATGTCAAGACGCCACTACTGTTTGAGTGGAGCGACCAATCCCCTGTCACCTTCACCAGGTGGGAGGAAGCCATGCCGATGGAGGGCAACTGTGTACTGGTCAGAGGAGAGCAGGGCAGGTGGGCTACTCAGGTGTGTGACAACCAGCGTGGCTTCATCTGTATGAAGAAATCTACCTCCCAACCCTCAGGGGACCAGGTGGACACGAACCCAGGCTGCAAATCGCATTGGACCAGGCATGGCTCCTTCTGCTACTTTGTGGGACCAGAGATCAAGACCTTTGATGAGGCCAAAGAGACATGCAAGAGCTCACAGTCATATCTGGCAGATGTTTCTAGCAGGTTGGATAATGCTTTCCTGATCAGCCTGGTTGGGTCCAGGCCAGAGCAACACTTCTGGATCGGACTCTCCAACCAGAACCACATCGACTTCTTCAGCTGGACGAACAGCAACAGGGTCAGGTACACCCACTGGAACGCACAGATGCCAGGCAGTCGACAGGGTTGTGTGGCCATGACAACAGGGACTCTAGCTGGATTATGGGATGTGCTGAGCTGCACCAATCAGGAGAAGTATATCTGTAAACACCTGGCAGAAGGAGCGGGGCCAACACCAGAACCAATTTCACCTGTCCCTCCCAGGTGCCATGAGGGCTGGTTTCCTGTGGGGTCTCGGAACTACTGCTTCAAGTTCTTTACAGGGCCTCGCAAAGATGAGAAGACCTGGTTTGAGGCTCGGGACTTCTGCAGGGTGATTGGAGGAGACCTACTCAGCATCCACAGTTCTACGGACCTCCAGTCTATGCATCATGTCCATGGTGGGACTTCCTGGATCGGTCTGAGTGCTCAGGATCCCAACACTGGCTTCGCCTGGACTGATGGGTCGCCACTGTCCTTCCAACACTGGATGGAGGGGGAACCCAACAACTACAACGGCGTGGAGTCCTGTGCTGAGATGAGGAATTCTTACTGGGATGAAGAGGGATCCTGGAACGATGTAAACTGTGAGGACTACAACGACTGGCTGTGTGAGATCCCTAAAGGAGTGACCCCACTACCTCATCTCAGCAACACCATCCCTGAGTATAATGTGACAGAGGATGGCTGGCTGGAGTATGGAGGCTCTCAATATTACTTTAATACTGAAGTGCTGGCCATGGAGAATGCCAGACACTACTGTCAGCAGAGGCATGGGGACCTTGTTGTTATCAACGGACTAACAGAAAATACATTTCTGTGGAAAAAGATCAATAAAGAGCAATTAGGAAGCCATTACATCGGGCTCACAGTTGATCTTGATCGCTCTTTTGGGTGGATGGACGGTACCCCAGTAGTATTCCAGAGATGGGACGACAACCAGCCGAACTTCAAGAACAACGATGAGAACTGTGTTGTCATGTACAGCTCCATGGgtttctggcatgactataactgtgGCACTGAAATGAGGTCCATCTGTGAGAGGAGTGGTTCCCCCCCAGTGAACAGCACCGTGCCCCCTACTGCCCCCCCCACAGGAGGCTGCCCCCCGGAATGGGTCCGCTACCAGTCTAAGTGCTACAAATTGATTGGATACCGGGTGCCTTGTTCCTGGCTCGAGGCCAGATCGTACTGCCAATCCATGGGAGCTAACCTGGCGTCCATCGCCAGTAGGCGGGAGCAAGTGTTTCTGACGACCCAGATGACTTCTGGTGCTACTGACCTGTGGATTGGACTGAGTAACTTAAACCGGGACGCGTTTGTCTGGACCGATGGCCAGGCAGTCAAATACTTAAACTTGGATTTCATCAAGACACTGTCGCAGATGTTCCCATCGCTATGGTTTTTCCATAGTCAGATGTACATGGATATGCTTTCCTCTCAGGCTAGTCGGTGTATTGTGATGGCCAGTTCCTCCTCCATCTTGGGAAAATGGGAAATCAGGTCCTGCAACGACACACACGGCTTCATCTGTCAGCGTAAAGTTGACTCAGGCATCCCAGTCCCGACACCGACAATGTTACCTAGAGGCTGGGTGAAGCTGGCCAACGACTCCTACAAGGTGCTGCCCCAGAACAGGACATGGCCCGAAGCCCGGATGCAGTGTGAGGCTGAGGAGGGCCAGCTGGCTAGCACCCTGGATGAACTGTCAGCAGCCTACCTGGAGCTGCAGGCTTTGAAGCTGCAGACACCACTGTGGATTGGACTCAATAGGAATGAGACGCAAGGCTACTTCAGGTGGATGGACGGATGGCCCTTGAGCATGGACCGGTGGGCCCAAGGCGAGCCCAGCAGAGACCGGCCCTGTGTCTACCTGGATGTGGAAGGCACCTGGAAGACAGCCCTTTGTAACCACACCTACCCCAGTGTGTGTAAGCAGTCcccagCCGTCCCGCCCATGGTCCCACCCCAGTACACCGGGGAATGTAtccaggaggagcaggaggagaacaGTGGTAGCAACAGCCCATGGTTCTGGTTGCCTTTCAGAGGGCACTGCTACAGCTTCGTCATTAACCACATAGAGTGGGCCGACGCCTCCACCAGCTGTATACGTAAAGGGGCGTCTCTGGTGAGCATCGAGGATCCTGAAGAACTCCGCTTCATAAAGAGCAACGTGGAGATTCTGAAAGACAGCTACTCCTCCTTCTGGATTGGCCTGTACAAAACACACCTAGGTCGGTGGAAGTGGCTGGACCAAACAGTGCTGGACTACATGAACTGGGCAGAGGGACAGCCTCAGGACTCTTCCTATATCTATGGATATATGCTATCCTCCGATGGGACCTGGAGCACTGCCCCCAGGTGGGATGATAAACCATACATCTGCAAGAAGTCCAAAGTTCTACCAGAAACACCACCAACACATGTGTCTCTGAAGGCAGGTCAGAGGCGTGTGTATTCAGGCCTGgcagtggtggtggtattggCTACCATGTGTCTGATGGGCCTCACAGCCTTAATGCTCTACAAGAAGACCGGCCGTCCCCTGCCCTCCTTCACCAACCCCCTGGTCTTCAGCGCAGGCCGGAGTACCTTCAACAACCCCCTCTACACGGAGCCCGTCACCGAGGTTGACCCCAGCATGGTGGACACTAGCCAGCTGGTTAACCATATGGAGGCTTAGCCAATGATCACTTTGTGATTGGAGAGAGTCAAGGGGGGAGTC

Function

NR:

description
macrophage mannose receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966151.1 True 4408 mRNA 0.54 32 41906782 42137364

Neighbor

gene id symbol gene type direction distance location
LOC110509166 LOC106596257 coding downstream 265616 41630582 ~ 41641166 (-)
znf414 znf414 coding downstream 279942 41587299 ~ 41626840 (-)
si:ch211-106k21.5 LOC106596230 coding downstream 338037 41551990 ~ 41568745 (-)
LOC110509161 rs8 coding downstream 370585 41532971 ~ 41536197 (-)
LOC118944899 NA coding downstream 372222 41534492 ~ 41534560 (-)
cfap410 cunh21orf2 coding upstream 223383 42360747 ~ 42368140 (-)
LOC118944818 NA coding upstream 232501 42369865 ~ 42370480 (-)
LOC110509173 NA coding upstream 263151 42400515 ~ 42410701 (-)
LOC110509174 them6 coding upstream 334527 42471891 ~ 42493837 (-)
them6 them6 coding upstream 360919 42498283 ~ 42508205 (-)
G2137677 NA non-coding downstream 375 41905190 ~ 41906407 (-)
G2137671 NA non-coding downstream 5573 41898369 ~ 41901209 (-)
G2137667 NA non-coding downstream 9436 41896843 ~ 41897346 (-)
G2137663 NA non-coding downstream 24424 41881958 ~ 41882358 (-)
G2137662 NA non-coding downstream 50293 41855452 ~ 41856489 (-)
G2137814 LOC106597294 non-coding upstream 84731 42220922 ~ 42226965 (-)
G2137854 NA non-coding upstream 91637 42229001 ~ 42229225 (-)
G2137868 NA non-coding upstream 140125 42277489 ~ 42277689 (-)
G2137873 NA non-coding upstream 146799 42284163 ~ 42284378 (-)
G2137874 NA non-coding upstream 149039 42286403 ~ 42286606 (-)
G2137648 LOC106596196 other downstream 92581 41810795 ~ 41814201 (-)
G2137555 NA other downstream 170393 41731714 ~ 41736389 (-)
G2137419 NA other downstream 645511 41260800 ~ 41261271 (-)
G2137111 NA other downstream 1431081 40472088 ~ 40475701 (-)
G2138294 LOC106594920 other upstream 211852 42349216 ~ 42351452 (-)
emilin2a LOC106595984 other upstream 1237383 43343531 ~ 43398034 (-)

Expression


Co-expression Network