Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110508269 |
| gene name | LOC106591834 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 42294380 ~ 42340868 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| collagen alpha-2(VI) chain-like, partial |
| id | description |
|---|---|
| K06238 | COL6A; collagen type VI alpha |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036966129.1 | True | 4169 | mRNA | 0.53 | 28 | 42294380 | 42340868 |
42,280,000
42,290,000
42,300,000
42,310,000
42,320,000
42,330,000
42,340,000
42,350,000
42,360,000
42,370,000
NC_048592.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| col6a1 | LOC106597294 | coding | upstream | 68011 | 42155341 ~ 42226369 (+) |
| LOC110508265 | LOC106596196 | coding | upstream | 438411 | 41756234 ~ 41856489 (+) |
| LOC110508264 | LOC106569745 | coding | upstream | 563079 | 41705147 ~ 41731301 (+) |
| LOC110508263 | LOC106596267 | coding | upstream | 600388 | 41643122 ~ 41693992 (+) |
| LOC110509163 | LOC106596239 | coding | upstream | 707084 | 41576046 ~ 41587296 (+) |
| si:ch211-227n13.3 | LOC106594920 | coding | downstream | 8275 | 42349143 ~ 42356392 (+) |
| rpl37a | rpl37a | coding | downstream | 27595 | 42368463 ~ 42385425 (+) |
| LOC110508270 | NA | coding | downstream | 88161 | 42429029 ~ 42435917 (+) |
| LOC118944837 | LOC106596172 | coding | downstream | 205406 | 42546274 ~ 42564604 (+) |
| LOC110509176 | LOC106596090 | coding | downstream | 243365 | 42584233 ~ 42599393 (+) |
| G2137880 | NA | non-coding | upstream | 3821 | 42290349 ~ 42290559 (+) |
| G2137878 | NA | non-coding | upstream | 5608 | 42288569 ~ 42288772 (+) |
| G2137876 | NA | non-coding | upstream | 6090 | 42288026 ~ 42288290 (+) |
| G2137875 | NA | non-coding | upstream | 6522 | 42287545 ~ 42287858 (+) |
| G2137855 | NA | non-coding | upstream | 64712 | 42229433 ~ 42229668 (+) |
| G2137902 | NA | non-coding | downstream | 26036 | 42366904 ~ 42367186 (+) |
| G2137905 | NA | non-coding | downstream | 33747 | 42374615 ~ 42374935 (+) |
| G2137913 | NA | non-coding | downstream | 55538 | 42396406 ~ 42398180 (+) |
| G2137915 | LOC106593806 | non-coding | downstream | 61469 | 42402337 ~ 42405070 (+) |
| G2137917 | NA | non-coding | downstream | 65216 | 42406084 ~ 42410673 (+) |
| G2137028 | NA | other | upstream | 545373 | 41748624 ~ 41749007 (+) |
| G2136831 | LOC106569792 | other | upstream | 1015938 | 41277863 ~ 41278442 (+) |
| G2136801 | NA | other | upstream | 1086344 | 41207513 ~ 41208036 (+) |
| G2136593 | dnajb4 | other | upstream | 1426700 | 40785256 ~ 40867680 (+) |
| G2138271 | NA | other | downstream | 908620 | 43249488 ~ 43254238 (+) |
| si:dkey-88l16.3 | LOC106598938 | other | downstream | 1272752 | 43590526 ~ 43681816 (+) |
| G2138940 | NA | other | downstream | 1282796 | 43623664 ~ 43629679 (+) |
