Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110508271 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 42625607 ~ 42703120 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: pituitary adenylate cyclase-activating polypeptide type I receptor isoform X3 |
| id | name | namespace |
|---|---|---|
| GO:0007188 | adenylate cyclase-modulating G protein-coupled receptor signaling pathway | biological_process |
| GO:0007200 | phospholipase C-activating G protein-coupled receptor signaling pathway | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004999 | vasoactive intestinal polypeptide receptor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036966602.1 | False | 1784 | mRNA | 0.54 | 13 | 42630145 | 42691448 |
| XM_036966601.1 | False | 2341 | mRNA | 0.53 | 15 | 42630145 | 42703120 |
| XM_036966603.1 | False | 2257 | mRNA | 0.54 | 14 | 42630145 | 42703120 |
| TU2445748 | False | 2727 | lncRNA | 0.49 | 5 | 42625607 | 42630720 |
| TU2445751 | True | 2822 | lncRNA | 0.49 | 5 | 42625607 | 42630720 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| them6 | them6 | coding | downstream | 121940 | 42498283 ~ 42508205 (-) |
| LOC110509174 | them6 | coding | downstream | 136308 | 42471891 ~ 42493837 (-) |
| LOC110509173 | NA | coding | downstream | 219444 | 42400515 ~ 42410701 (-) |
| LOC118944818 | NA | coding | downstream | 259665 | 42369865 ~ 42370480 (-) |
| cfap410 | cunh21orf2 | coding | downstream | 262005 | 42360747 ~ 42368140 (-) |
| LOC110509177 | LOC106597278 | coding | upstream | 30523 | 42733643 ~ 42772837 (-) |
| LOC110508296 | pde1c | coding | upstream | 174376 | 42877496 ~ 42959408 (-) |
| LOC110509179 | LOC105010334 | coding | upstream | 270235 | 42973355 ~ 42987359 (-) |
| LOC118944838 | LOC106596014 | coding | upstream | 338102 | 43041222 ~ 43077460 (-) |
| emilin2a | LOC106595984 | coding | upstream | 640411 | 43343531 ~ 43398034 (-) |
| G2138424 | NA | non-coding | downstream | 4675 | 42623290 ~ 42625470 (-) |
| G2138420 | NA | non-coding | downstream | 15113 | 42611057 ~ 42615032 (-) |
| G2138414 | NA | non-coding | downstream | 30007 | 42599681 ~ 42600138 (-) |
| G2138386 | NA | non-coding | downstream | 107361 | 42522314 ~ 42522784 (-) |
| G2138367 | NA | non-coding | downstream | 152502 | 42476443 ~ 42477643 (-) |
| G2138471 | NA | non-coding | upstream | 15687 | 42718807 ~ 42851163 (-) |
| G2138482 | NA | non-coding | upstream | 33832 | 42736952 ~ 42737594 (-) |
| G2138492 | NA | non-coding | upstream | 58754 | 42761874 ~ 42762340 (-) |
| G2138502 | NA | non-coding | upstream | 76091 | 42779211 ~ 42780170 (-) |
| G2138505 | NA | non-coding | upstream | 88320 | 42791440 ~ 42815950 (-) |
| G2138294 | LOC106594920 | other | downstream | 278693 | 42349216 ~ 42351452 (-) |
| G2137814 | LOC106597294 | other | downstream | 403180 | 42220922 ~ 42226965 (-) |
| G2137648 | LOC106596196 | other | downstream | 815944 | 41810795 ~ 41814201 (-) |
| G2137555 | NA | other | downstream | 893756 | 41731714 ~ 41736389 (-) |
| LOC110509166 | LOC106596257 | other | downstream | 998762 | 41630582 ~ 41641166 (-) |
| G2138439 | NA | non-coding | upstream | 13798 | 42644518 ~ 42645096 (-) |
| G2138441 | NA | non-coding | upstream | 17702 | 42648422 ~ 42648758 (-) |
