Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110509177 |
| gene name | LOC106597278 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 42733643 ~ 42772837 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| FYVE and coiled-coil domain-containing protein 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036967019.1 | False | 4746 | mRNA | 0.53 | 20 | 42733643 | 42772837 |
| XM_036967020.1 | False | 4740 | mRNA | 0.53 | 20 | 42733643 | 42772837 |
| XM_036967021.1 | False | 4740 | mRNA | 0.53 | 20 | 42733643 | 42772837 |
| XM_036967022.1 | False | 4698 | mRNA | 0.53 | 21 | 42733643 | 42772837 |
| XM_036967023.1 | False | 4620 | mRNA | 0.53 | 19 | 42733643 | 42772837 |
| XM_036967025.1 | False | 4608 | mRNA | 0.53 | 18 | 42733643 | 42772837 |
| XM_036967026.1 | False | 4602 | mRNA | 0.53 | 18 | 42733643 | 42772837 |
| XM_036967027.1 | False | 4602 | mRNA | 0.53 | 18 | 42733643 | 42772837 |
| XR_005040294.1 | False | 3463 | mRNA | 0.55 | 18 | 42737850 | 42772837 |
| XR_005040295.1 | False | 3608 | mRNA | 0.54 | 18 | 42743221 | 42772837 |
| XM_036967028.1 | False | 3723 | mRNA | 0.54 | 18 | 42743228 | 42772837 |
| XM_036967029.1 | True | 3188 | mRNA | 0.55 | 15 | 42746681 | 42772837 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110508271 | NA | coding | downstream | 30523 | 42625607 ~ 42703120 (-) |
| them6 | them6 | coding | downstream | 225438 | 42498283 ~ 42508205 (-) |
| LOC110509174 | them6 | coding | downstream | 239806 | 42471891 ~ 42493837 (-) |
| LOC110509173 | NA | coding | downstream | 322942 | 42400515 ~ 42410701 (-) |
| LOC118944818 | NA | coding | downstream | 363163 | 42369865 ~ 42370480 (-) |
| LOC110508296 | pde1c | coding | upstream | 104659 | 42877496 ~ 42959408 (-) |
| LOC110509179 | LOC105010334 | coding | upstream | 200518 | 42973355 ~ 42987359 (-) |
| LOC118944838 | LOC106596014 | coding | upstream | 268385 | 43041222 ~ 43077460 (-) |
| emilin2a | LOC106595984 | coding | upstream | 570694 | 43343531 ~ 43398034 (-) |
| G2138441 | NA | non-coding | downstream | 84885 | 42648422 ~ 42648758 (-) |
| G2138439 | NA | non-coding | downstream | 88547 | 42644518 ~ 42645096 (-) |
| G2138424 | NA | non-coding | downstream | 108173 | 42623290 ~ 42625470 (-) |
| G2138420 | NA | non-coding | downstream | 118611 | 42611057 ~ 42615032 (-) |
| G2138502 | NA | non-coding | upstream | 6374 | 42779211 ~ 42780170 (-) |
| G2138505 | NA | non-coding | upstream | 18603 | 42791440 ~ 42815950 (-) |
| G2138526 | NA | non-coding | upstream | 84514 | 42857351 ~ 42858407 (-) |
| G2138525 | LOC106597466 | non-coding | upstream | 87765 | 42860602 ~ 42862543 (-) |
| G2138540 | NA | non-coding | upstream | 130620 | 42903457 ~ 42910028 (-) |
| G2138294 | LOC106594920 | other | downstream | 382191 | 42349216 ~ 42351452 (-) |
| G2137814 | LOC106597294 | other | downstream | 506678 | 42220922 ~ 42226965 (-) |
| G2137648 | LOC106596196 | other | downstream | 919442 | 41810795 ~ 41814201 (-) |
| G2137555 | NA | other | downstream | 997254 | 41731714 ~ 41736389 (-) |
| LOC110509166 | LOC106596257 | other | downstream | 1102260 | 41630582 ~ 41641166 (-) |
