LOC110508296 (pde1c)



Basic Information


Item Value
gene id LOC110508296
gene name pde1c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42877496 ~ 42959408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036967030.1
AGTGCAATGTGGTCGGCCCCTGCAGCAGGGATTGgcgtgagagacggagagacgaagGTTCTATTTGACCCTCGTAGCCCCGAGGAGGTCCTGGCTGATGAACTTCCTGCTTCTAACGGGCCAGAAGCCACAGAGAAGACTGCTATCAGGTTGAGATGTCTGCTGAAacagctggagagaggagaggtgtctctGGTGGACCTCAAGAAGAACCTGGAGTATGCTGCCACTGTTCTGGAGTCAGTTTATATAGAGAAGACCAggagatTGGTGGATACAGAGGAAGAGCTCAGCGATATCCAATCAGAGTATGTGCCTTCAGAGGTGCGTGATTGGTTGGCCTCTACATTCACCCGTCAGATGGGTTTGATGCTGCCGCAGACCGAGGAGAAACCACGCTTCAGGAGCATCGTACACGCTGTGCAGGCTGGTATCTTTGTAGAGAGGATGTACAGACGTACCTCTAGCATGGTGGGAGTGAGCTCTCCTGCTACAGTTGTAGCAGTACTGAAGCACGTTGATAAGTGGTCGTTTGATGTGTTTGCTCTGAACGAGGCCAGTGGAGACCACGCCCTCAAGTTCATCTTCTTTGAACTACTGACCAGATACGACCTCATCAGCAGATTCAAGATCCCGGTCTCAGCGGTGTTCTCGTTCGTAGAAGCTCTGGAGGTGGGCTACGGTAAACACAACAACCCCTACCATAACCTGATGCATGCTGCAGATGTCACACAGACAATACACTACCTACTGCTGAAGACTGGCATCGTgCATTGGTTGACAGAGCTAGAGATCTTTGCGATGATCTTTGCAGCAGCGGTTCATGACTACGAACACACTGGAACCACCAATAATTTCCACATCCAGACCAGATCAGACACAGCGATCCTGTACAACGACCAGTCTGTCCTCGAGAGCCACCATGTCAGCGCAGCATACCGCCTCCTACAGGACGATGATGAGATCAACATACTATACAACCTGTCTAAAGACGACTGGAGagagcTGAGGGGCCTGGTGGTACAGATGGTTCTGGCTACAGACATGTCCTGCCACTTCCAGCAGCTGAAACATATGAAGAACTTTCTCCAGCAACCGGAGGGgATTGATAAACCCAAAGCCATGTCTTTGCTGCTCCATACAGCTGATATCAGCCACCCAGCTAAGACATGGGACCTGCACCACCGCTGGACAGCATCCCTTCTGGAGGAGTTCTTCAGACAgGGCGATAAGGAGGCTGAACTAGGACTgcccttctctcctctgtgtgaCCGCAAGTCAACCATGGTGGCACAGTCCCAGATAGGGTTTATAGACTTCATTGTGGTTCCAACCTTCACCGTGTTGACAGAAATGACGGAGAAGATTGTCATTCCGCTCATCAACGAGGCGTCACTCAGCCTGGCAGGGTTCAGGCGCTCCAGtctaAACAGTATTAGCTGTGAGGATGCTAAGCGTGGTAGTGTAAAGAGTACCGGATCAGAGGGCAGTGCTACTGGACATTTTTCTCTACTGGCTGTGGACCTGAAGAACTTCAAGGCTCTGTGGAACGAAGAGGtttatcagaacagagagagatggaagacaCAGGCCACTAAAGGTGAGAAGGCCAGAAgggaggctgaggaggagagagtgctGCAGGAAGACACTATGGAACCCCAGGAGAGAGAAATTGAAACAGAGCTGGGAGATACAGAGTcacaggagggaaagggagaggaagagggagaggaagaagaggtggagggagagggagaagaggagagtgaagTGCCAGAGGAGCTCAACTTACGTCAGGACAAATGCACAGAGAAGaccggagagagagatggagtgaggacaggagagagggatggagtgaggacaCAGACTGGAAGTGCAGCAGACACCAGCCCACCATTACAGAAAAGTAGGTgtcattatactgtatattaaacagGTTTTTCAGGAAACATTTTCTCTTATGTCAGAGGGGGCGGAGTCTCCACAGAGTGACCAAAACACCTGAAGGTAAAAGACAGCCAACCTCTACTGACAGGTAACATGAAGGTAAGAGACACCAACCTCTACTGACAGGTAACATGAAGGTAAGAGACACCAACCTCTGCTGACATCAACACTAACTCAAACTGCTGACAGGTAACATGAAGGTAAAAGACACCAACCTCTACTGACAGGTAACATGAAGTTCTATGTTGTTTCCCTCAGCGGTAGATCTGCACTAGGATCAAGCAGCAGACCAGGAGGCTGAAGCTCTAACGCTCTCTACTGGACAGAGACTATTACatgtcatccatccatcctccatccaCTGTTTCTTATCGTATGTAGAGTACGTAAGAGCCAACCTCTACTTTATACATGAGAGCTCTTTGAAGCAATGAGGAAAAATCAGAACTTCAGATCTTGAGAACttactgaattgactgaattgaaatgtaaTGGAACCCAACCCTGTTGCTTATTGCAGGGTATTTGAGCCAAACCCTTCCTTTCCTATGTTGTGATTgacattgtttttgtttttacagtTGAGGTGCATTATGGGTAAAGAGCCTTCACAGACTCTTCAATCCACCGACACCCCTAACTGGatgtatctacagttgaagtcggaagtttacatacaccttagccaaatacattttaactcagtttttcacaattcctgacatttaatcgtgaaaattccctgtcttaggtcagttgggat

Function


symbol description
pde1c Predicted to enable calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within response to calcium ion and sensory perception of smell. Predicted to be located in cilium. Predicted to be active in neuronal cell body. Implicated in autosomal dominant nonsyndromic deafness 74.

NR:

description
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X2

GO: NA

KEGG:

id description
K13755 PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036967030.1 True 2716 mRNA 0.49 14 42877496 42959408
Loading

Neighbor


gene id symbol gene type direction distance location
LOC110509177 LOC106597278 coding downstream 104659 42733643 ~ 42772837 (-)
LOC110508271 NA coding downstream 174376 42625607 ~ 42703120 (-)
them6 them6 coding downstream 369291 42498283 ~ 42508205 (-)
LOC110509174 them6 coding downstream 383659 42471891 ~ 42493837 (-)
LOC110509173 NA coding downstream 466795 42400515 ~ 42410701 (-)
LOC110509179 LOC105010334 coding upstream 13947 42973355 ~ 42987359 (-)
LOC118944838 LOC106596014 coding upstream 81814 43041222 ~ 43077460 (-)
emilin2a LOC106595984 coding upstream 384123 43343531 ~ 43398034 (-)
G2138525 LOC106597466 non-coding downstream 14953 42860602 ~ 42862543 (-)
G2138526 NA non-coding downstream 19089 42857351 ~ 42858407 (-)
G2138471 NA non-coding downstream 26333 42718807 ~ 42851163 (-)
G2138505 NA non-coding downstream 61546 42791440 ~ 42815950 (-)
G2138502 NA non-coding downstream 97326 42779211 ~ 42780170 (-)
G2138593 NA non-coding upstream 78809 43038217 ~ 43039942 (-)
G2138601 NA non-coding upstream 124667 43084075 ~ 43084938 (-)
G2138634 NA non-coding upstream 171481 43130889 ~ 43131310 (-)
G2138598 atp6v1h non-coding upstream 195669 43155077 ~ 43156881 (-)
G2138650 NA non-coding upstream 228096 43187504 ~ 43190542 (-)
G2138294 LOC106594920 other downstream 526044 42349216 ~ 42351452 (-)
G2137814 LOC106597294 other downstream 650531 42220922 ~ 42226965 (-)
G2137648 LOC106596196 other downstream 1063295 41810795 ~ 41814201 (-)
G2137555 NA other downstream 1141107 41731714 ~ 41736389 (-)
LOC110509166 LOC106596257 other downstream 1246113 41630582 ~ 41641166 (-)

Expression


LOC110508296(pde1c) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
End of interactive chart.

LOC110508296(pde1c) Expression in each Bioproject

Bar chart with 12 bars.
LOC110508296(pde1c) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network