Item | Value |
---|---|
gene id | LOC110508296 |
gene name | pde1c |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048592.1 |
NCBI id | CM023246.2 |
chromosome length | 43716683 |
location | 42877496 ~ 42959408 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
pde1c | Predicted to enable calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within response to calcium ion and sensory perception of smell. Predicted to be located in cilium. Predicted to be active in neuronal cell body. Implicated in autosomal dominant nonsyndromic deafness 74. |
description |
---|
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X2 |
id | description |
---|---|
K13755 | PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036967030.1 | True | 2716 | mRNA | 0.49 | 14 | 42877496 | 42959408 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110509177 | LOC106597278 | coding | downstream | 104659 | 42733643 ~ 42772837 (-) |
LOC110508271 | NA | coding | downstream | 174376 | 42625607 ~ 42703120 (-) |
them6 | them6 | coding | downstream | 369291 | 42498283 ~ 42508205 (-) |
LOC110509174 | them6 | coding | downstream | 383659 | 42471891 ~ 42493837 (-) |
LOC110509173 | NA | coding | downstream | 466795 | 42400515 ~ 42410701 (-) |
LOC110509179 | LOC105010334 | coding | upstream | 13947 | 42973355 ~ 42987359 (-) |
LOC118944838 | LOC106596014 | coding | upstream | 81814 | 43041222 ~ 43077460 (-) |
emilin2a | LOC106595984 | coding | upstream | 384123 | 43343531 ~ 43398034 (-) |
G2138525 | LOC106597466 | non-coding | downstream | 14953 | 42860602 ~ 42862543 (-) |
G2138526 | NA | non-coding | downstream | 19089 | 42857351 ~ 42858407 (-) |
G2138471 | NA | non-coding | downstream | 26333 | 42718807 ~ 42851163 (-) |
G2138505 | NA | non-coding | downstream | 61546 | 42791440 ~ 42815950 (-) |
G2138502 | NA | non-coding | downstream | 97326 | 42779211 ~ 42780170 (-) |
G2138593 | NA | non-coding | upstream | 78809 | 43038217 ~ 43039942 (-) |
G2138601 | NA | non-coding | upstream | 124667 | 43084075 ~ 43084938 (-) |
G2138634 | NA | non-coding | upstream | 171481 | 43130889 ~ 43131310 (-) |
G2138598 | atp6v1h | non-coding | upstream | 195669 | 43155077 ~ 43156881 (-) |
G2138650 | NA | non-coding | upstream | 228096 | 43187504 ~ 43190542 (-) |
G2138294 | LOC106594920 | other | downstream | 526044 | 42349216 ~ 42351452 (-) |
G2137814 | LOC106597294 | other | downstream | 650531 | 42220922 ~ 42226965 (-) |
G2137648 | LOC106596196 | other | downstream | 1063295 | 41810795 ~ 41814201 (-) |
G2137555 | NA | other | downstream | 1141107 | 41731714 ~ 41736389 (-) |
LOC110509166 | LOC106596257 | other | downstream | 1246113 | 41630582 ~ 41641166 (-) |