LOC118944838 (LOC106596014)


Basic Information

Item Value
gene id LOC118944838
gene name LOC106596014
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 43041222 ~ 43077460 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966351.1
ctctccctgtctctctctcatcagctGCCGTGCTCCATTATGAGTTCCACTCCTCTGCATGAGCAAGAGGCCCAGGTCCTTCAGCAGGGTGGCGGTCAGGGTGGGGAGGTGGTACCCTCAGGCAGTGTAGCCTCCCGCCCCCCTCAGCCCCACTCAGACCCCCAGGCCTCCAGACGTGTCTGCTTCTATAAGAGTGGAGACCCCCAGTTCGGAGGCCACCGGATGGTCATCAATGCCAGGACCTTCAAGACCTTCGATGCCCTCCTGGATGCCCTGTCTAAAAAGGTCCCCCTGCCGTTCGGGGTCCGCACCATCACCACCCCCCGTGGCTCCCACCCTGTCCGGTGTCTGGAAGAGCTGCAGAATGGGGGCTCCTATGTCTGCTCGGACCAGCGGAAGGTGAAGCCCCTCAACCTGGACATGGCTAACCGCCGCCAGCCACCCTGGAACACCACCACCCGGCCCGTCAGTGGGGGTCGGAGGGCGCAGCGAGGGAGTCGTGGTGTCCCCGGGGACATCAACCGGCCGGCAGACAGCAGGATCAGGACCCCTAAAAGGCTGATAGTATTTAAGAATAGAGACCCCAGTGTGAGGAGGACTGtagttctgcagagaagaacggctCCAACCTATGATGCTCTACTGGACTACCTGTCAGTCATCATGCAGTTCCCTGTACTGAAGCTGTACACACCAGACGGCAGCAGGGTTGAAGGTCTGCCAGCCTTGATCCTGTGTTCTGGGGTGGTGGTAGCTTCGGGGAACGAACCTTTTAGACCAGGGAACTATGACTTCCTGAGACCGACCCAGCCTGCTGCTGCTCTGTCCTTTAACTCAGACTCTATAGAACCAACCAGGCTAAAGCCTCTAACAGAAAATAAAACATCGTTATCCAGCGGACGGCGGTCCAGGAACTTCAGCCTGTCATCAGAAAGATACTTTGTGAACCAGATCAACAAGTCTGTGAACGATAGCTCCTATGGCCAGCCGGTCCGCCTCCCAGAGAACATGGAGACAGAGCTAAACCAGAGAAAGACCCGGGGCTCTAtagatatggagacagaaacgTGTCAGCTTGTAGAGGACAACGGGAAGACCTCCATCGTACCGCAGGATGATGACATTGAGAAGTCCTTCAGGGTCAACCAGGATGGCAGCATGACCGTCGAGATGAAGGTCCGTCTGACCATTAAGGAGGAGGAGATGATCCATTGGACGACCACGTTGAGCCGCTCCAGCGTGGTGACCAATCATAAACTAGGAGCCAAGTCGGTATCCACCCCACAGTCCCCCGACAACAACGTGGAGGCGAAAGACCCTAACATTGGTCTCAGTGAGGATGAGACCAAGGAGAGTAACCACCCCAGCCGCAATGCAGAGAGGGACGTGGCCTTCAGCGGGACAGacggaggagggacagacagtggCGGTGGAGGCAGGGCTGGTTCTCTGAAGGCCCACCCCCGTCAGAAGCGGATGCCAACCCCTGGGCTGAGACAGGTGAAAAAGAAACAGGCGTCCGTGGAGAGCGTAACCACGGTGACGGAGACAGGTGTCCAGGAGACCAGCCTGGGGACTTTTTCGTACACAGAGTGCATGGCAGACGGGGAAACCACAGAGGGGTACTGTGTGGTCCGgcagagcagcagcagctccAGGTTACCCGCCATACCACCTGTCCCCAAGCCCAGGAAGAGTGGCTCGGCTGGGGCCAGCAGGGCCATCAGGACCAGCTCCCACTCCTCACTCCGGTCCTCTGGAGTAGCAGAGGTGATGCAGATTCAGAACAATGGTAATGGCAGGGAGATCACTGAGACCGTCATGCACATCTACGAGAGGAGACAGAGCAGCTACGATAACTACTATGCCAACGCCCTGGGGGCCGGGTATGGGACAtgtggggagggaggtgggggttaTGCAGGCGAGGCAGGGTATGGTGGAGGTTGTGGTGGTGGCTCCAACCCCATTCCGCGGAGTAAACCGGCCTCTTCAGATTCGGGGCCGCGCTCCTCCGTGGACTTAAGCCGACCATCCAGTACCAGCAACTCACTGAACCAACAGAGGGATGAGatactctctctgtcttctgaACCCACCTCACCTTCTCAGAATGTCACCGTTCCATTTAAAAAACAACCAGAGATCATTAGCAACAAACTGGCGTCTTTCCCAGACAACGAAGCTTACGCCGCGTCAGAGTCTTACACAGGGTCATCTCCTAAAGAGACAGAATGGCCAGAACCAAAGACTCTACTGAGTGAGAGCTTCTCCATGCCTGTCTTGCACCCCCCTCTAGCCCCCTCTGGGGTACACCAGTACGTAGAGAACTGGCTGCAGAACATCGCCCCGGAGTCCATCCCCTATGTCCCCTACATGGAGGAGGGAGGCCAGGACACAGAAGAGACTGAACCCAGGACcaaggTAAACATGGAGGACGAAGGCCAGGACACTGGGGAGGCTGAACCCAGGACcaagGTAAACATGGAGGACGAAGGCCAGGACACTGGGGAGGCTGAGCCCAGGACCAAGGTGATCTTCCAGATAGGAGCCGACTCAGAGGTTGAGTCAGAAGTGAAGAGTGATTACCCAGAGGATCAACATCTGCCCCAGGGGGGAGACCACCTCTCAGTGGGAGGCATGTCCAtgtcctgcctgtctgtccctgtcagCTACGCCGAAGCTCAGGTCGACCTCTCTAACCCCCAGAGGACCAGGAAACTGTGCTCCTCTATGCCCAGTGTCAGTGAGTCTACCTCCTCCACCCACCACCTCCTTATCCCCAAGGCCACTCTTACACCGATCTTCCGTCAGCTCTGCTCCTCGATACAGTGCATCAGACAGGCCTCCCAGCCTCCTGCCAGCCTGGAGAAATCACACAGCATGCCTGACTTCTCCTCTCAGgTGTCATCGGTGTTCGGCTCGTCCTCCAAGGCGCTGATGTCCTTCCTGTCGGTGTCCACCCTGAAGGACACCCTGTCGTCAGCCctgggaaaaggaggaggaggagagttttGTAGAGGGAACTCTAACAGCGGGTCGGAGGCCCTCCTGGTGATGCAGTCGCTCCAGAAGATCTCCACCATGGAGGACGAGGAACAGCAGAGAGCCAGCCTGGCCAGCCTGCAGAGCCGGACATCTGATCAGCTGAAGGACAGCTGGAGAGACTTCCAGGAAAGGAGCAGTGAAATGGGAGACAGGGAAAGTCCTCCTCTGTCTCCGAGCACCAACCAGGAGTTCGCCTTGGATGTGGAGTCTGAGGCGGGTGACGAGAACGGAGGACGGTTGGGTATCGAGGAGCTCATGGAGGAACTTAACATGCCCCAGGAACTCAGGGATGAGGTGTCGTCgttggtggagggagagagaacagtgcaaTACGCCATGAGGTCTCCAATGTTAGGGGGCAGCGTCAGTGATATGTCTTATGCTGTTGACACTGAGGTAGACAAAGTAGAGTGTGATGAGATTGAGGAACTAGAGGTGTTTGAGGAAGATgaagatgaggaggagaaaaaggaggagagagaagaggtgggggaagaggagaaggaagaagtGGTGGAGAGTGAGGACAAAAGATCTGAATCAGACTTTGAAGAGGGCAGGAGTGTTGATAGTCATCCATCCTCAGATAACAAAGTCTGTTCCAGTGGCAGGATGTTAGATGAAGTCTGTTATATAGAAGAACGAGGtttagaagaggagggagaggagaaggaggaggaccagggcAGCTGTGAAGAGCAGAATTATGACGAGGGGGAgcaggtggaggaagaggaggcagcAGAGGTTGGGTCTGAAGTATCAATGTCAAGGAAGTCAATTAAGTCTTTAAAGTCAGATAATTCAGTAAAGTCAGAGAAATCTGTAATGTCTGAGAAATCAATGAAATCCGTAAATTCAGAAAAGTCAATGACTTCAAGGCAGTCTGTAAAGTCAGATAAATCTGAGGTAGAGTGTAAAGTCTCAGAACACGAGGAGGTTGACGTAGTGTCCAACAACTCCTCCTCTAGAGCCATATACCTCTGTGGTGTCAAAGATCAGGGTCTAGACACCTCCAACGAACTAAAGACTGACgaaggagaggaagatgaggatgaggatgaggaagaaAAGGTCAGAGGTAAAGACTGCTCCCATCCTGTTGAGATATCTCAGGAGCTTCTAGACTTTGTCAACACTGCTCTGAAGTCCTCCTCCCTGATGTTCACCTACGACCCTAAGGGTAACCTGCGGATCGAACCGGAGGGGGCAACCAGAGTCGTCCATACCAAACAGATGGTTATATTTAACGGGTGCGTCGACAGCCAGTACGGCCTGAAGAGACTGCCCAGCCCCAACACCTCTGACCTGTCTGACTACAGACCTGAGACATCCAGCAGCGGAGGGTACAAGACCCAGGGGTCAGTGGACATGTCAACGGAGAGCGGAGACGAAGACAAGGAAGAGGCAGGGAGACACTCGCCTGGCTTTCGACGTATCAGACAGACTAGTGACAAGCAGAGTAAAGCCAGTACTACCTCTCTGGAGCTCTGGGCCTCTAAACCCTCGGTAGAAATGAAAGCAGATCAGTTAAGGAGCCCTGAGAGTCTTGAAGGGAAGAGGCCCACAGGGAGCTTTGAGTCTTGTCACTCTGGGGCTAAAGTCTGTGGGGAGAGCCTGTCGTACGTCAGCGGGTCCAGCTCAGTGAAGACAGAACCAGGACCAGAGCTGGTCAGGATGATCGATCAGGGACGTTGGCTATTTAAGGAGGGGGACTCTCCTGAAGGGGTGGGAGGAGCGTGGCAGAGCGCAGCAGACTCTAAGAGCCTCCCTGACTCTAGTGAGGGGGTTCTGATTGACCAAGGGCGCTGGCTTCTTAAGGAGAATCACCTAATCAGGAAGTCTCCCCCGGTTCCCATGGGGATGTATGGTAACCTTGACAACACATCCGTGGATACAACCCTCAGTGAGGAGGCTCCAGCCTACgaccacctctcctccacctccctccaccatcaccaccacctcaaccccctgtctgtcctctcctcctccgagCTAGAGGAGCTGGCCCAACCTCCGACCCCTAAGTGCACCTATTATAACATGTCCCACAGCAGCGACTCAGACCCCTTCCTTGACAATCTCAGTCTCAACGGGAACGGGGCCAGGGAGAGGTCAGAGGGCAAGGATCAGGGATTGCAGGGCAGGTCTAAGAGGGAGACAGCTGTGGACACATCCCGGACCTGGGCGAGGAAAAATGGCAGCATGTCGTCGTTCGCCTCGGTGGAGTTCAGGATGCGGGACGGCAGGGTGCATCCGGAGGCGGGGCTGGGTGGGTCAGAGTCTGCTGTAGAGCCAAGCTCCAGGACTGCAGTGGGTATGTCTGGACGGAGCAGGGCTCTGCAGGTACAGAGCAGTCTAGAGTCTCTACGCTGTGGGCCGTATTGTCCTATACTATAATAACTGTTTTCCAATACGATAAACAACACAGATCTGTCCCATACCATGTACAACAAAGAACTGTCTCATACGATATACAACACAGATCTGTTCCATACCATAAACAACACAGATCTCTTCCATACCATATACACTAAATACCTGTCCCATACCATAATGAATACAATGCAGATCTGTCCCATACCATATACAACACAGACCTGTCCCATACCATAAACAACACAGACCTGTCCATACCATATACAACACAGACCTGTCCATACCATATACAACACAGACCTGTCCATACCATATACAACACAGACCTGTCCATACCATCTACAACACAGACCTGTCCATACCATATACAACACagacctgtccataccataatGACTACAACACAGACCTGTCCCATACCATATACAACACAGACCTGTCCATACCATATACAACATAGACCTGTCCCATACCATATGCAATACAGACCTTTCCATACCATAATGACTACAACACAGACTTGTCCCATACCATGTACAACACAGACCTGTCCCATACCATAAACAACACagacctgtccataccataatGACTACAATACAGACCTGTCCATACCATATACAACACAGACCTGTCCATACCATATACAACACAGACCTGTCCATACCATATACAACACAGACCTGTCCATACCATATGCAACACAGACCTGTCCCATACCATAAACAACACAGACCTTTCCATACCATAATGACTACAACACGGACCTGTCCCATACCATACGCAACACAGACCTTTCCATACCATAATGACTACAACACAGACTTGTCCCATACCATGTACAACACAGACCTGTCCCATACCATAAACAACACAGACCTGTCCATACCATATACAACACAGACCTGTCCCATACCATATGGAACACAGACCTTTCCATACCATAATGACTACAACACGGACCTGTCCCATACCATACGCAACACAGACCTTTCCATACCATAATGACTACAACACAGACTTGTCCCATACCATGTACAACACAGACCTGTCCCATACCATAAACAACACagacctgtccataccataatGACTACAATACAGACCTGTCCATACCATATGCAACACagacctgtccataccataatGACTACAATACAGACCTGTCCATACCATATACAACACAGACCTGTCCATACCATATACAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC105007149

GO: NA

KEGG:

id description
K19538 RP1; retinitis pigmentosa 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966351.1 True 6638 mRNA 0.53 11 43041222 43077460

Neighbor

gene id symbol gene type direction distance location
LOC110509179 LOC105010334 coding downstream 53863 42973355 ~ 42987359 (-)
LOC110508296 pde1c coding downstream 81814 42877496 ~ 42959408 (-)
LOC110509177 LOC106597278 coding downstream 268385 42733643 ~ 42772837 (-)
LOC110508271 NA coding downstream 338102 42625607 ~ 42703120 (-)
them6 them6 coding downstream 533017 42498283 ~ 42508205 (-)
emilin2a LOC106595984 coding upstream 266071 43343531 ~ 43398034 (-)
G2138593 NA non-coding downstream 1280 43038217 ~ 43039942 (-)
G2138543 NA non-coding downstream 119969 42918699 ~ 42921253 (-)
G2138541 NA non-coding downstream 124656 42908268 ~ 42916566 (-)
G2138540 NA non-coding downstream 131194 42903457 ~ 42910028 (-)
G2138525 LOC106597466 non-coding downstream 178679 42860602 ~ 42862543 (-)
G2138601 NA non-coding upstream 6615 43084075 ~ 43084938 (-)
G2138634 NA non-coding upstream 53429 43130889 ~ 43131310 (-)
G2138598 atp6v1h non-coding upstream 77617 43155077 ~ 43156881 (-)
G2138650 NA non-coding upstream 110044 43187504 ~ 43190542 (-)
G2138651 NA non-coding upstream 111765 43189225 ~ 43191252 (-)
G2138294 LOC106594920 other downstream 689770 42349216 ~ 42351452 (-)
G2137814 LOC106597294 other downstream 814257 42220922 ~ 42226965 (-)
G2137648 LOC106596196 other downstream 1227021 41810795 ~ 41814201 (-)
G2137555 NA other downstream 1304833 41731714 ~ 41736389 (-)
LOC110509166 LOC106596257 other downstream 1409839 41630582 ~ 41641166 (-)

Expression


Co-expression Network