G2096731


Basic Information

Item Value
gene id G2096731
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 3949337 ~ 3951021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2398405
CTTACCTCTTTTAGTTGACCGGTCAGGATTTGTGAGACACACCGTCCGACGACAGTACTGGCCAATCGGCCCGGACAATTTCCAGCGTCGTCCTTCTACCAGATCACGTCGGTGGTCACCATGTTAGAGTTGCGtgaattcgaatctggtatcaggataaatataacaatgagtcaccgattttgtactatgtattttttattagctaagtaataaatggcaaatgcaactttcgtatataTGGGCTCACTGTAATGccacgcagggcagaacagagaactgacaagatgtatgtaaacagtaTACTTTATATTGTGATAGACagttccaacccgtctgttggcctatcacagtagagactgggcgtggtttaaacttgctcagcctattgcaggcgctcaggcgggtccccgcctcttggcgcttctgttgatagatgtaactgttgctgTGAAGAACATCCATGCGCTCATGCTCCATACCGTTAtctcgcacctggctcctgttatctaacaaaagaccgcTTGTTCTGCAACACCCCATGCtactctgtatttttccatcatgagaaaggcccatggcatTGACACttttaacaatgtttcaagtcatctatgttgcataacacatacatatatccacacaagccaacagcagataatattcaatcatatatatggtaatggctataatgtaaaacaCAGGATCCaacaatacgccatcccatctgtgggacaatcatttgtttttcaaaaggacaatgacccaaaacacctccaggctgtgaaagggctatttgaccgagaaggagagtgatggagtgctgcatcagacgacctggcctccacaatcacccaacctcaacccagttgagatggtttgggatgaattggaccacagagtgaatgaaaagcagccaacaagtgctcagcatatgtggaaacttcAAGAATCTGATCCACAACCAGGCTGGTATGTCATTTTCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGGTCCACAACCTGGCAGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAAC
>TU2398409
CTTTATATTGTGATAGACagttccaacccgtctgttggcctatcacagtagagactgggcgtggtttaaacttgctcagcctattgcaggcgctcaggcgggtccccgcctcttggcgcttctgttgatagatgtaactgttgctgTGAAGAACATCCATGCGCTCATGCTCCATACCGTTAtctcgcacctggctcctgttatctaacaaaagaccgcTTGTTCTGCAACACCCCATGCtactctgtatttttccatcatgagaaaggcccatggcatTGACACttttaacaatgtttcaagtcatctatgttgcataacacatacatatatccacacaagccaacagcagataatattcaatcatatatatggtaatggctataatgtaaaacaCAGGATCCaacaatacgccatcccatctgtgggacaatcatttgtttttcaaaaggacaatgacccaaaacacctccaggctgtgaaagggctatttgaccgagaaggagagtgatggagtgctgcatcagacgacctggcctccacaatcacccaacctcaacccagttgagatggtttgggatgaattggaccacagagtgaatgaaaagcagccaacaagtgctcagcatatgtggaaacttcAAGAATCTGATCCACAACCAGGCTGGTATGTCATTTTCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGGTCCACAACCTGGCAGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTAATACATGGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAACCAGGTTGGTATGTCATTATCATGTTATTACATAGACCTGATCCACAAC
>TU2398404
CTTACCTCTTTTAGTTGACCGGTCAGGATTTGTGAGACACACCGTCCGACGACAGTACTGGCCAATCGGCCCGGACAATTTCCAGCGTCGTCCTTCTACCAGATCACGTCGGTGGTCACCATGTTAGAGTTGCGtgaattcgaatctggtatcaggataaatataacaatgagtcaccgattttgtactatgtattttttattagctaagtaataaatggcaaatgcaactttcgtatataTGGGCTCACTGTAATGccacgcagggcagaacagagaactgacaagatgtatgtaaacagtaTACTTTATATTGTGATAGACagttccaacccgtctgttggcctatcacagtagagactgggcgtggtttaaacttgctcagcctattgcaggcgctcaggcgggtccccgcctcttggcgcttctgttgatagatgtaactgttgctgTGAAGAACATCCATGCGCTCATGCTCCATACCGTTAtctcgcacctggctcctgttatctaacaaaagaccgcTTGTTCTGCAACACCCCATGCtactctgtatttttccatcatgagaaaggcccatggcatTGACACttttaacaatgtttcaagtcatctatgttgcataacacatacatatatccacacaagccaacagcagataatattcaatcatatatatggtaatggctataatgtaaaacaCAGGATCCaacaatacgccatcccatctgtgggacaatcatttgtttttcaaaaggacaatgacccaaaacacctccaggctgtgaaagggctatttgaccgagaaggagagtgatggagtgctgcatcagacgacctggcctccacaatcacccaacctcaacccagttgagatggtttgggatgaattggaccacagagtgaa
>TU2398406
CTTTATATTGTGATAGACagttccaacccgtctgttggcctatcacagtagagactgggcgtggtttaaacttgctcagcctattgcaggcgctcaggcgggtccccgcctcttggcgcttctgttgatagatgtaactgttgctgTGAAGAACATCCATGCGCTCATGCTCCATACCGTTAtctcgcacctggctcctgttatctaacaaaagaccgcTTGTTCTGCAACACCCCATGCtactctgtatttttccatcatgagaaaggcccatggcatTGACACttttaacaatgtttcaagtcatctatgttgcataacacatacatatatccacacaagc
>TU2398408
CTTACCTCTTTTAGTTGACCGGTCAGGATTTGTGAGACACACCGTCCGACGACAGTACTGGCCAATCGGCCCGGACAATTTCCAGCGTCGTCCTTCTACCAGATCACGTCGGTGGTCACCATGTTAGAGTTGCGtgaattcgaatctggtatcaggataaatataacaatgagtcaccgattttgtactatgtattttttattagctaagtaataaatggcaaatgcaactttcgtatataTGGGCTCACTGTAATGccacgcagggcagaacagagaactgacaagatgtatgtaaacagtaTACTTTATATTGTGATAGACagttccaacccgtctgttggcctatcacagtagagactgggcgtggtttaaacttgctcagcctattgcaggcgctcaggcgggtccccgcctcttggcgcttctgttgatagatgtaactgttgctgTGAAGAACATCCATGCGCTCATGCTCCATACCGTTAtctcgcacctggctcctgttatctaacaaaagaccgcTTGTTCTGCAACACCCCATGCtactctgtatttttccatcatgagaaaggcccatggcatTGACACttttaacaatgtttcaagtcatctatgttgcataacacatacatatatccacacaagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2398405 False 1685 TUCP 0.42 1 3949337 3951021
TU2398409 False 1380 TUCP 0.42 1 3949337 3950716
TU2398404 False 906 lncRNA 0.45 1 3950116 3951021
TU2398406 False 343 lncRNA 0.46 1 3950374 3950716
TU2398408 True 648 lncRNA 0.45 1 3950374 3951021

Neighbor

gene id symbol gene type direction distance location
LOC110509196 LOC106600560 coding downstream 63043 3815075 ~ 3887073 (-)
LOC118944868 NA coding downstream 175466 3773505 ~ 3774650 (-)
fam102ba LOC106600567 coding downstream 194858 3739404 ~ 3755258 (-)
prpf38b LOC106600568 coding downstream 219983 3713128 ~ 3730133 (-)
gpsm2 LOC106600570 coding downstream 255293 3671574 ~ 3694823 (-)
LOC110509197 LOC106600559 coding upstream 7616 3958637 ~ 4087126 (-)
LOC110508373 LOC106600554 coding upstream 398484 4349502 ~ 4357045 (-)
LOC110508374 LOC100196681 coding upstream 466804 4417825 ~ 4482014 (-)
trnas-uga-86 NA coding upstream 604377 4555398 ~ 4555479 (-)
trnas-uga-87 NA coding upstream 605994 4557015 ~ 4557096 (-)
G2096718 NA non-coding downstream 26957 3922819 ~ 3923159 (-)
G2096694 NA non-coding downstream 31953 3887171 ~ 3918163 (-)
G2096698 NA non-coding downstream 46714 3894791 ~ 3903402 (-)
G2096713 NA non-coding downstream 67416 3882449 ~ 3882700 (-)
G2096710 NA non-coding downstream 76365 3865586 ~ 3873751 (-)
G2096734 NA non-coding upstream 5270 3956291 ~ 3956683 (-)
G2096810 NA non-coding upstream 155845 4106866 ~ 4107206 (-)
G2096817 NA non-coding upstream 160052 4111073 ~ 4111405 (-)
G2096828 NA non-coding upstream 166679 4117700 ~ 4118338 (-)
G2096832 NA non-coding upstream 171642 4122663 ~ 4123682 (-)
G2096732 NA other downstream 2491 3947275 ~ 3947625 (-)
G2096163 NA other downstream 640442 3309144 ~ 3309674 (-)
G2094433 LOC106600477 other downstream 2042704 1906907 ~ 1907412 (-)
LOC110508327 lig1 other downstream 2207716 1703128 ~ 1742400 (-)
G2093581 LOC106600502 other downstream 2785479 1156034 ~ 1164637 (-)
G2097165 NA other upstream 373453 4324474 ~ 4324977 (-)
LOC110508393 LOC106600538 other upstream 1915120 5866119 ~ 5952354 (-)
G2098765 NA other upstream 1994118 5945139 ~ 5946875 (-)
G2098763 NA other upstream 1996114 5947135 ~ 5949100 (-)
G2098766 NA other upstream 1996717 5947738 ~ 5949613 (-)

Expression


Co-expression Network