XLOC_000004 (eed)


Basic Information

Item Value
gene id XLOC_000004
gene name eed
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 27690 ~ 34330 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000012
CACTATAGGGATTAGGGACCTAGTGAGCGCTTTTGGACACCGCCGCGTGTCTCCCTCTGCTGCCGATCCGCTTTactgcagctgtcgtgctgtttTGCGACAGTGTGGCGCGGATGTTCTGCTTTCCGACAGTGTGGCACCGCTGGATGAAGATGAGGAGGAAGATGTCTGAACCTCACGGCGAGGCGGGAAACGAGATGCCGAACAAAAAGCAGAAACTGAGCAGCGACGAGAACAGCAACCCCGACCTGTCTGGAGACGACAATgatgaTGCGGTCAGCGTGGAGAGCGGCACACACCCCGAGCGTCCCGACACTCCCACCAACACAGCGAGCGCTCCGGGCAGGAAGAGCTGGGGGAAGGGGAAGTGGAAGTCCAAGAAGTGCAAATACTCCTTCAAGTGTGTGAACAGCCTAAAGgaggatCATGGTCAGCCGCTGTTTGGAGTTCAGTTCAACTGGCACAGCAAAGAAGGAGATCCGCTGGTGTTCGCTACTGTGGGCAGCAACAGAGTCACGCTGTACGAGTGTCATTCTCAGGGAGAGATCCGGCTGCTGCAGTCCTACGTGGACGCTGATGCTGATGAGAACTTCTACACGTGTGCGTGGACGTTCGACTGCAGCTCCAGTCACCCCCTGCTGGCTGTCGCTGGCTCCCGCGGCATCATCCGCATCATCAACCACATCACCATGCAGTGTGTGAAGCATTATGTTGGTCATGGGAACGCCATCAACGAGCTGAAGTTTCACCCCAGAGACCCGAATCTGCTGCTGTCCGTCAGCAAAGATCATGCTCTGCGTCTGTGGAACATCCAGACAGACACACTGGTGGCCATCTTTGGGGGAGTGGAAGGACATCGGGACGAGGTGTTGAGTGCTgacttTGACCTGCTGGGGGAGAAGATCATGTCGTGTGGGATGGATCACTCGCTGAAGCTGTGGCGGCTGGACTCTGAGCGTCTGCAGCGGGCCATACGTGGATCCTACGAGTACAACCCTAGCAAGACCAACCGgcctTTCGTGTCTCAGAAGATCCACTTCCCGGATTTCTCCACGCGGGACATTCACAGGAACTATGTGGACTGTGTGCGCTGGCTCGGAGACCTGATCCTGTCCAAGtcatGTGAGAACGCCATCGTGTGCTGGAAGCCGGGCCGGATGGAGGACGACATCGACCGCATTAAACCCAACGAGAGCAACGTGACCATCCTGGGCCGCTTCGACTACAGCCAGTGCGACATCTGGTACATGCGCTTCTCCATGGACTTCTGGCAGAAGatGCTGGCTCTGGGGAATCAGGTGGGGAAGCTGTACGTCTGGGATCTGGAGGTGGAAGATCCACATAAAGCAAAGTGCACCACCCTGACGCTGCCGCGCTGCACCTCCGCCATCCGGCAGACCAGCTTCAGCCGTGACAGCAGCATCCTGATCGCAGTGTGTGACGACGCCTCCATCTGGCGCTGGGACCGACTGCGCTGattggatgatgatgatgatgatgatgatgatgaagatgctTCACTCTGCTTTTGTCtttaataaagtatatttttatagGCCGA
>TCONS_00000013
TCCGACAGTGTGGCACCGCTGGATGAAGATGAGGAGGAAGATGTCTGAACCTCACGGCGAGGCGGGAAACGAGATGCCGAACAAAAAGCAGAAACTGAGCAGCGACGAGAACAGCAACCCCGACCTGTCTGGAGACGACAATgatgaTGCGGTCAGCGTGGAGAGCGGCACACACCCCGAGCGTCCCGACACTCCCACCAACACAGCGAGCGCTCCGGGCAGGAAGAGCTGGGGGAAGGGGAAGTGGAAGTCCAAGAAGTGCAAATACTCCTTCAAGTGTGTGAACAGCCTAAAGgaggatCATGGTCAGCCGCTGTTTGGAGTTCAGTTCAACTGGCACAGCAAAGAAGGAGATCCGCTGGTGTTCGCTACTGTGGGCAGCAACAGAGTCACGCTGTACGAGTGTCATTCTCAGGGAGAGATCCGGCTGCTGCAGTCCTACGTGGACGCTGATGCTGATGAGAACTTCTACACGTGTGCGTGGACGTTCGACTGCAGCTCCAGTCACCCCCTGCTGGCTGTCGCTGGCTCCCGCGGCATCATCCGCATCATCAACCACATCACCATGCAGTGTGTGAAGCATTATGTTGGTCATGGGAACGCCATCAACGAGCTGAAGTTTCACCCCAGAGACCCGAATCTGCTGCTGTCCGTCAGCAAAGGTAAaccagctccacacacacacacacttcagcagttgacccatatgtgtgtgtgtgtgtgtgtgcgtttcagATCATGCTCTGCGTCTGTGGAACATCCAGACAGACACACTGGTGGCCATCTTTGGGGGAGTGGAAGGACATCGGGACGAGGTGTTGAGTGCT
>TCONS_00003001
TCCGACAGTGTGGCACCGCTGGATGAAGATGAGGAGGAAGATGTCTGAACCTCACGGCGAGGCGGGAAACGAGATGCCGAACAAAAAGCAGAAACTGAGCAGCGACGAGAACAGCAACCCCGACCTGTCTGGAGACGACAATgatgaTGCGGTCAGCGTGGAGAGCGGCACACACCCCGAGCGTCCCGACACTCCCACCAACACAGCGAGCGCTCCGGGCAGGAAGAGCTGGGGGAAGGGGAAGTGGAAGTCCAAGAAGTGCAAATACTCCTTCAAGTGTGTGAACAGCCTAAAGgaggatCATGGTCAGCCGCTGTTTGGAGTTCAGTTCAACTGGCACAGCAAAGAAGGAGATCCGCTGGTGTTCGCTACTGTGGGCAGCAACAGAGTCACGCTGTACGAGTGTCATTCTCAGGGAGAGATCCGGCTGCTGCAGTCCTACGTGGACGCTGATGCTGATGAGAACTTCTACACGTGTGCGTGGACGTTCGACTGCAGCTCCAGTCACCCCCTGCTGGCTGTCGCTGGCTCCCGCGGCATCATCCGCATCATCAACCACATCACCATGCAGTGTGTGAAGCATTATGTTGGTCATGGGAACGCCATCAACGAGCTGAAGTTTCACCCCAGAGACCCGAATCTGCTGCTGTCCGTCAGCAAAGGTAAaccagctccacacacacacacacttcagcagttgacccatatgtgtgtgtgtgtgtgtgtgcgtttcagATCATGCTCTGCGTCTGTGGAACATCCAGACAGACACACTGGTGGCCATCTTTGGGGGAGTGGAAGGACATCGGGACGAGGTGTTGAGTGCTgacttTGACCTGCTGGGGGAGAAGATCATGTCGTGTGGGATGGATCACTCGCTGAAGCTGTGGCGGCTGGACTCTGAGCGTCTGCAGCGGGCCATACGTGGATCCTACGAGTACAACCCTAGCAAGACCAACCGGCGAGTGCTCACTGTATAGGGCTCTTCACTGCCTAGTGCTGTACCCTGTCTAGTGCCCTCAGCAGTGCTCTGActcgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TCONS_00000014
GGAAGATGTCTGAACCTCACGGCGAGGCGGGAAACGAGATGCCGAACAAAAAGCAGAAACTGAGCAGCGACGAGAACAGCAACCCCGACCTGTCTGGAGACGACAATgatgaTGCGGTCAGCGTGGAGAGCGGCACACACCCCGAGCGTCCCGACACTCCCACCAACACAGCGAGCGCTCCGGGCAGGAAGAGCTGGGGGAAGGGGAAGTGGAAGTCCAAGAAGTGCAAATACTCCTTCAAGTGTGTGAACAGCCTAAAGgaggatCATGGTCAGCCGCTGTTTGGAGTTCAGTTCAACTGGCACAGCAAAGAAGGAGATCCGCTGGTGTTCGCTACTGTGGGCAGCAACAGAGTCACGCTGTACGAGTGTCATTCTCAGGGAGAGATCCGGCTGCTGCAGTCCTACGTGGACGCTGATGTATCCTTCataaggagtgtgtgtgtg
>TCONS_00000015
gtgtgtgtgtgtgtgtgtgcgtttcagATCATGCTCTGCGTCTGTGGAACATCCAGACAGACACACTGGTGGCCATCTTTGGGGGAGTGGAAGGACATCGGGACGAGGTGTTGAGTGCTgacttTGACCTGCTGGGGGAGAAGATCATGTCGTGTGGGATGGATCACTCGCTGAAGCTGTGGCGGCTGGACTCTGAGCGTCTGCAGCGGGCCATACGTGGATCCTACGAGTACAACCCTAGCAAGACCAACCGGCGAGTGCTCACTGTATAGGGCTCTTCACTGCCTAGTGCTGTACCCTGTCTAGTGCCCTCAGCAGTGCTCTGActcgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
eed Predicted to contribute to histone methyltransferase activity (H3-K27 specific) and nucleosome binding activity. Predicted to be involved in chromatin silencing and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone methylation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in several structures, including eye; gonad; heart; intestine; and midbrain hindbrain boundary. Orthologous to human EED (embryonic ectoderm development).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006342 chromatin silencing biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0016571 histone methylation biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031491 nucleosome binding molecular_function
GO:0046976 histone methyltransferase activity (H3-K27 specific) molecular_function
GO:0042054 histone methyltransferase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050417-287 Predicted to contribute to histone methyltransferase activity (H3-K27 specific) and nucleosome binding activity. Predicted to be involved in chromatin silencing and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone methylation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in several structures, including eye; gonad; heart; intestine; and midbrain hindbrain boundary. Orthologous to human EED (embryonic ectoderm development).

Ensembl:

ensembl_id ENSDARG00000099640

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000012 False 1561 mRNA 0.56 12 27690 34330
TCONS_00000013 False 827 lncRNA 0.56 6 27814 31905
TCONS_00003001 False 1071 lncRNA 0.56 7 27814 32353
TCONS_00000014 False 446 lncRNA 0.56 4 27849 31321
TCONS_00000015 True 363 lncRNA 0.56 2 31787 32353

Neighbor

gene id symbol gene type direction distance location
XLOC_000003 CU651657.1 coding upstream 435 25585 ~ 27255 (+)
XLOC_000002 nfkbiz coding upstream 4301 18716 ~ 23389 (+)
XLOC_000001 cep97 coding upstream 11317 11822 ~ 16373 (+)
XLOC_000005 hikeshi coding downstream 2222 36552 ~ 39191 (+)
XLOC_000006 f7l coding downstream 75468 109798 ~ 119146 (+)
XLOC_000007 f7 coding downstream 85630 119960 ~ 125246 (+)
XLOC_000008 f7i coding downstream 92920 127250 ~ 134079 (+)
XLOC_000009 f10 coding downstream 101573 135903 ~ 142469 (+)
XLOC_000011 NA non-coding downstream 122462 156792 ~ 157282 (+)
XLOC_000018 NA non-coding downstream 321151 355481 ~ 358562 (+)
XLOC_000024 dre-mir-155 non-coding downstream 542114 576444 ~ 576521 (+)
XLOC_000026 NA non-coding downstream 760646 794976 ~ 911551 (+)
XLOC_000028 NA non-coding downstream 981482 1015812 ~ 1033638 (+)

Expression


Co-expression Network