G2100109


Basic Information

Item Value
gene id G2100109
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7203606 ~ 7206488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2402165
tttttttgtggcggttttggagcagtgattTCTGAGCGGCctctcaggttatgtcgatttactgtggatatagatacttttgtacctgtttcctccagcatcttcacaatgtcctttgctgttgttctgggattgatttgcacttctcgcaccaaagtactgtaacgcttgtcgtctggggaaggagaggaggaccaaggtgcagcgtggtaagtgttcatataaaACGGGTTTAAtaaacactgaaacaaaacacgacaaacgaacagtcctgaacggtgcaacaaaacacagaacagaaaataaacacccacaaccaaaatggggaaaacagtaTGATtcttaatcagagacaacgaacgacacctgcctctgattgagaaccatactaggcccaacacatagaaatataacaacctagaaaaacaaacatagactgcccaccccaactcacgccctgaccacactaaaacaaagacaaaacaaaggaactaaggtcagaacgagacaagtacgttcatctctagaagatagaacgcatctccttcctgagcggtaagaTGGCTGCAGAtgaaccttcaggcatttggaaattgctcccaaggatgaaccagacttgtggagatctacactttttttctgaggtcttggctgatttattttgattttcccatgatgtcaagcaaagaggcattgattatgaaggtaggccttgaaatacttccacatgtatacctcaaattgactcaaatgatgataATTAACCTATCAAAAGCATCTAAATCCATGacttcattttctggaattttccaagctgtttaaaggcacagccaacttagtgtatgtcaacttctgacccactggaattgtgatacagtgagttatacgtgaaataatctgtctgtaaacaactgttggataaattacttgtcatgcacaaaatagatgtcctaactgacatgccaaaactatagtttgttaacaagacatttgtggagtggttgaaaaacaagttttaatgactccaacctaagtgtatggtaacttccgacttcaactgtatgtgtgtgtgtgtgtttgccctcTATATGACTTTGTGTTTGTCTTGAGAAAAGGTTCTGTGCACTTGTGAATGAGTGCAAATGTGATTGTgaatgtttgtgtgcatgtatgcATGTGTAAAAACGGAGTATGTGTTCTGCACTGTGTTCTGCACTGTGTTCTGACTCTGAGTGTGTCGTGACTTCCATGCTGCTCCCCTGCCAGCTGTGTGGAGGTCAGTTCTGTCCCAGCACAGCCAAGTGCAGTCGGACGGGAGCAGGGTTAATAGGGAGGTTAGAGATAGGGGGCATATACACTCCCTTCTCCACCTCCTGCTCCCCACATCCCGCAGTGGTATGGCAGTAGTATTATTCAAAGGTTAGAAAGAGGAGGCATAAACATAATCCCTCTCCCTTTGTCCCACTGACCCCACTCCTCTCTGCTGCACTGGGCTGTGTATTGGTTATCATGATTACCGTGCGGCCCGTGACCAATGGATTAAGCTTCCCAACCAAACCCTTGGGGCGTCGGGGGGTCATGGCAACCGTCGGCCAGTGGCtttgctctcattttatctaccaacatagacagtgctctaactcctctagctccacaatgaaatagggtgcaggccaggcagcaggctgttagccagcctgccagcatagtggagtctgccactagcacagtcagtgtagtcagctcagctatcaccattgagaccgtgtctgtgcctcgacctgggttgggcaaaactaaacatggcggtgttcgccttagcaatctcactaggataaagaccacctccattcctgtcattattgaaagagatcatgatacctcacatctcaaaatagggctacttaatgttagatcccttacttcaaaggcaattatagtcaatgaactaatcactgatcataatcttgatgtgattggcctgactgaaacatggcttaagcctgatgaatttactgtgttaaatgaggcctcacctcctggctacactagtgaccatatcccccgtgcatcccgcaaagacggaggtgttgctaacatttacgatagcaaatttcaatttacaaaaaaaaaaatgacgttttcgtcttttgagcttctagtcatgaaatctatgcagcctactcaatcactttttatagctactgtttacaggcctcctgggccatatacagcgttcctcactgagttccctgaattcctatcggaccttgtagtcatagcggataatattctaatctttggtgactttaatattcacatggaaaagtccacagacccactccaaaaggctttcggagccatcatcgactcagtgggttttgtccaacatgtctctggacccactcactgtcacagtcatacgctggacctagttttgtcccatggaataaatgttgtggatcttaatgtttttcctcataatcgtggactatcggaccaccattttattacgtttgcaattgcaacaaataatctgctcagaccccaaccaaggatcatcaaaagtcgtgctataaattcacagacaacacaaagattccttgatgtccttccagattccctctgtctacccaaggacgccagaggacaaaaatcagttaaccacctaactgaggaactcaacttaaccttgcgcaataccctagatgcagttgtacccctaaaaactaaaaacatttctcatgagaaactagctccctggtacacagaaaatacccgagctctgaagcaagcttccagaaaattggaacggaaatggcgccacaccaaactggaagtcttccgactagcttggaaagacagtactgtgcagtaccgaag

Function

NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2402165 True 2883 TUCP 0.44 1 7203606 7206488

Neighbor

gene id symbol gene type direction distance location
LOC110508412 NA coding downstream 151233 7039094 ~ 7052373 (-)
LOC110508409 LOC106599985 coding downstream 187134 6985437 ~ 7016472 (-)
LOC110508405 LOC106599977 coding downstream 376988 6817234 ~ 6826618 (-)
LOC110508403 LOC106599971 coding downstream 403792 6752808 ~ 6799814 (-)
LOC118944892 NA coding downstream 498627 6704861 ~ 6704979 (-)
LOC110509205 LOC106599992 coding upstream 19819 7226307 ~ 7253057 (-)
LOC110508422 LOC106600004 coding upstream 205276 7411764 ~ 7504744 (-)
LOC110508425 LOC106600009 coding upstream 332701 7539189 ~ 7564681 (-)
sirt6 sirt6 coding upstream 402746 7609234 ~ 7619567 (-)
ub2r1 ub2r1 coding upstream 421424 7627912 ~ 7629740 (-)
G2100036 NA non-coding downstream 110087 6994966 ~ 7093519 (-)
G2100024 NA non-coding downstream 227707 6975135 ~ 6975899 (-)
G2100023 NA non-coding downstream 231404 6971948 ~ 6972202 (-)
G2100021 NA non-coding downstream 233665 6969720 ~ 6969941 (-)
G2100108 NA non-coding upstream 980 7207468 ~ 7213518 (-)
G2100154 NA non-coding upstream 8259 7214747 ~ 7219258 (-)
G2100156 NA non-coding upstream 14800 7221288 ~ 7222126 (-)
G2100163 NA non-coding upstream 25033 7231521 ~ 7231744 (-)
G2099318 NA other downstream 764510 6426170 ~ 6439096 (-)
G2098997 NA other downstream 964993 6238169 ~ 6238613 (-)
G2098996 NA other downstream 965512 6237433 ~ 6238094 (-)
G2098793 NA other downstream 1204112 5995825 ~ 5999494 (-)
G2098766 NA other downstream 1253993 5947738 ~ 5949613 (-)
G2100707 NA other upstream 386806 7593294 ~ 7593815 (-)
LOC110508434 LOC106600027 other upstream 561928 7767544 ~ 7837267 (-)
LOC110508443 LOC106600051 other upstream 786923 7993411 ~ 8044009 (-)
G2101243 NA other upstream 951731 8158219 ~ 8158518 (-)
G2101464 NA other upstream 1031656 8238144 ~ 8239853 (-)

Expression


Co-expression Network