XLOC_004001 (zgc:174354)


Basic Information

Item Value
gene id XLOC_004001
gene name zgc:174354
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12450564 ~ 12452482 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007635
CAACGgttctttttgtgttgttttgaacttcGCTCATTGGCATCTGATCTCGGCGTCCTTCGTGGCTACTGATTCCCAGATTATTGATTGTTGGATACATCGATTGATCGTCTGCTTCTCCCATCATTCAGGTTTGACCCTTGTTATCACACTGTGGTTTGTATTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGGCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGGCTGAAGTCCTCCAACAGAAGATTTGTTGgacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctgaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCATAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGACCAAGCCGCTTTCCTTCTCTTCCTCAGCTGGTGCAGCATCTTCAGTCCAAGATGCCAGAGGGAAACGTTCCCGTTCCCCATCTCCACCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA
>TCONS_00007636
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGGCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGGCTGAAGTCCTCCAACAGAAGATTTGTTGgacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctgaaagcggtgatgtaccagtccagtctgtgctactactccagcagTGAGGCCATGACACTGCTTGGGCTTCTTCCACCCAACTATGTCTGCTTTCACTGTGGGATCCCAGGACACCACATTAGGCACTGCCCCTCTAAAGGGggcagcagctctgctccGCATAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGACCAAGCCGCTTTCCTTCTCTTCCTCAGCTGGTGCAGCATCTTCAGTCCAAGATGCCAGAGGGAAACGTTCCCGTTCCCCATCTCCACCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGA
>TCONS_00007637
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGGCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGGCTGAAGTCCTCCAACAGAAGATTTGTTGgacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctgaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCATAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

symbol description
zgc:174354 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-8 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000111826

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007635 False 1007 mRNA 0.50 6 12450564 12452482
TCONS_00007636 False 837 mRNA 0.54 7 12450662 12452313
TCONS_00007637 True 525 mRNA 0.53 5 12450972 12452313

Neighbor

gene id symbol gene type direction distance location
XLOC_003999 zgc:174355 coding downstream 13330 12435301 ~ 12437234 (-)
XLOC_003996 si:dkey-27d5.9 coding downstream 32612 12416065 ~ 12417952 (-)
XLOC_003994 si:dkey-27d5.10 coding downstream 55882 12392715 ~ 12394682 (-)
XLOC_003993 zgc:174353 coding downstream 71023 12377621 ~ 12379541 (-)
XLOC_003992 zgc:174353 coding downstream 86442 12362231 ~ 12364122 (-)
XLOC_004002 NA coding upstream 11218 12463700 ~ 12464486 (-)
XLOC_004003 si:dkey-27d5.6 coding upstream 17607 12470089 ~ 12472006 (-)
XLOC_004004 si:dkey-27d5.5 coding upstream 28903 12481385 ~ 12483302 (-)
XLOC_004005 si:dkey-27d5.4 coding upstream 44698 12497180 ~ 12499116 (-)
XLOC_004007 si:dkey-27d5.3 coding upstream 57741 12510223 ~ 12512122 (-)
XLOC_004000 BX000700.23 misc downstream 12184 12438084 ~ 12438380 (-)
XLOC_003995 BX000700.6 misc downstream 54750 12395518 ~ 12395814 (-)
XLOC_003991 BX000700.22 misc downstream 99009 12351259 ~ 12351555 (-)
XLOC_003988 LO017719.2 misc downstream 126638 12323630 ~ 12323926 (-)
XLOC_003985 CABZ01022564.3 misc downstream 160896 12289372 ~ 12289668 (-)
XLOC_004006 BX000700.27 misc upstream 47484 12499966 ~ 12500262 (-)
XLOC_004008 BX000700.19 misc upstream 60484 12512966 ~ 12513262 (-)
XLOC_004013 CABZ01022569.1 misc upstream 138517 12590999 ~ 12591296 (-)
XLOC_004015 CR450764.4 misc upstream 169036 12621518 ~ 12621767 (-)
XLOC_004019 CR450764.8 misc upstream 238913 12691395 ~ 12691691 (-)
XLOC_003977 NA non-coding downstream 237133 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 264420 12185854 ~ 12186144 (-)
XLOC_003972 NA non-coding downstream 284557 12165723 ~ 12166007 (-)
XLOC_003962 CR848705.2 non-coding downstream 744428 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 848684 11594994 ~ 11601880 (-)
XLOC_004024 CR450764.5 non-coding upstream 303661 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 1030189 13482671 ~ 13482787 (-)
XLOC_004032 CR555295.1 non-coding upstream 1345971 13798453 ~ 13800802 (-)
XLOC_004034 NA non-coding upstream 1695181 14147663 ~ 14148426 (-)

Expression


Co-expression Network