G2100844 (LOC106569516)


Basic Information

Item Value
gene id G2100844
gene name LOC106569516
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7853544 ~ 7856941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2402981
CACGTGTTCTAACCCCACCCAGCATTTCCCCTATCCAAACTCTAGCACAAAACTCAAATCAATACTTTAGTTGCAgtaataaaaaacaatcaataccCCAGTTTAAAAAGCCCTATATCGTGCAATGCCTTGAGATATCTACTTTGTCCTCTGGcatcacacacacaaagttaTATTCCCCACCCAAACATTTGCCCAGCAAAACACAAATAATAGACATGCACACAGTCGTCAAGGTATCGCTACCTCACTTTCATTATCATAAAGGTCAAGAGAAACTATTCTCTATTCAGTCTCAAATCTCAATGAACCACGGTATTAATTATCCCCCCTTATATTCAGACACCTTCTTAGCAAGAACCACCTAGGGTACAATAATGAAAACTGGAACAGGTCTAGTCTCATCCTAGAACCCTGGCAAGTCTAGAACCCTTGTGAGCCTAGAACCCTGGCAAAAAGAGGCAGAGGAACTTCCACCACCTTAGGTTGGGTGACACACAGCATACAGTGAAAATGGAATAGATACAACAATACTAAAAtagacactgtatgtacatgttatatttaactACACTTTGGATGCTTTGTACAATAGTCCTGAACTTAAGACCTGCTTATCATGCTTGCTTGTGCCGTGTGGTTGTTTGTGTACTGATGTGGTGGAACCTGCACCACACTAACAGTGAGAAGCTCGTTTACGGCTTGGATCAGACATGAATCATTCTGTCACCATGGAAGAGCTCCTATACACCACAGATATCATACCATCAGTTCATGAAACTGGCATTCATGTTGGCTCCATCGATGTTATGGAACCTAATTATGATTCGACGTTTCAAACAGAGTTTGAGTAATGGATCGACTCAATCCGTAGTGCTGGAGACCTGCGTTACAGCCCGATAGAAACGTCCAAGTAATGTTCCTGtaaacactgCATGTCGGCTCAAATCGCAAATAACCTTCACATTTCAACCGCGCTACAGCGCTGAACCTCAGTGATAAGGATTGAGTCAAGCCCTAATTCTATGTCTATCTGTGGCTCTGCTATACACTATAAAAATGTTATTACTTTGAGAGAAAAAGCATGAGCAAAGATTGAGGATAAGTGTGAATTAAGGAATGTGTAATCCCTCCAGATCTCAGAAAGTCAGTAAAAGTGTTCTATTTATAAGACGCTATAACACAATTTCTTTACCATTAGGAATAGAAAAGGTCTGTCGTCCTGTGTTTGATACAGACAAGTAGCAGCAAACCGAAACAACTATTGCGTACGTGTACGATGTCAAATGTAAGACGCATGAAACAACATGTTACTTTGACAGAAAATGAACATCATCCACTGCAACTGATCATcagtcctgctctctccatcctcaaAACAGTCAACTGAACCATCTTCTCAAGAGCTACAGAGAAGACTGTTCCTAAAAATGAAAACTAAAAGAGATTTTCCAAAGACTCCTCAAACCGGTTTTGTTGTATAGGCTTGATTGTTCTTCATTCACATTTGCAATCTATCAAGACAGACACAGAGGTCTCCTTACAAAAACAAACTTGTTTGGTTTTATTGCTAGTATTTTCTAGCCTGATTCCAGATGTGTTTGTGACTACAAATCTATGTTCATCTAAGGCTTCAGAGACATCAAAGTCTCCACTACCCGTAGACTTCAGACACATTGGATCATATGGATGGGCAACAGTCAAACAAATAGTAAGATTAAATACCGCAGTACATCTTCATTCCTTGCCCTCACTCAGTTATTAGAACCTTAAACTAAGAAGTTAAGACACAGACTCACAGGAGAGAAGACCTTCTGATAATATGAGAAAGTCTTCTCTCCTGTTTTAACTTCTTAGCAAGCGGACAGGGGCAAGTGGACAGAAAATAACTGGCTTGAGAAAATATTATTTCTCAAATGACTCTTAAAAAGGCCagttctcccccctctctggaTTGGTGAAAGCAatccagagagggaggatgtCTCTTAAGAGCGACGGGGAGAAATACAaaagcagacagacagctgtCTACTGTAGACACAGGGAGGAGTGATGTCTACTCAGGTCCATACAGATAGCATCTTCAACTCTTGAgttgtacatacatacatacatacatacatgtaactgccaaaagaaaggaaacactttagtaaatgagggacacaaagtattttgaaagcaggtgcttccacacagcggtggttcctgagttagttaagcaatttaacatcccatcatgcttaagaGTTggataaaaatgcccagttgcccattatttggGCTACCATAGCTAGAAGagaactcagtgactttgaaagaggggtctcaaagaagcatagttttaaaaaaaatgtaactaggcaagtcagttaagaacaaatccttatttacaatgacggcctaccaaaagataAAAGggctcctgcggggacggggggctgggataaaaatatatatacaaatattggacaaaacacatttaaaaaggGGTTGTGGTTGTgtgttccagacacttgtagaatctttgccaaggcgcattgaagctgttctggcggctcgtggtggcccaacgccctactAAGAcactgttggtgtttcctttatttcgtcagttacctgtatgtacaCAGAGAAGACAGTTTGTAGGTGCGCACCCATATTCAGCCTCAGGAAGTCTCAAGGAACACGTATCCAAAGTCGGACAGTCGTGTCCATATTAAGAGGTCATTCATTTCCATGAGTCAACACACATACCCTCAACGCACTCACAGATTTACAGCATACTGGATGCTCCTCTCCTGTAGGTTGATGACTTTGTACAGCTCcttacagacacacgcacacacagagctaaaaacacacacagacacacacacaccctctcctcctctctcaggcGTGTGCTGCAGCCAGGTCGTGGTTGATGAAGCGCCGTAGTCTCTCCAGGTATTGGCTGTAGAGCTCTATGTCGTTGTGTCCCGCCCCCTCCACCCAGAGTGGCTCCACGGCCTTGGGACAGCGCTCAAACAGAGCCAGGCCGTGGGAGAAGTCGATCACCTCGTCCTCCGTCCCGTGGATGATCAGCACTGGGGATGGGATCTTAGACACCTTCTCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2402981 True 3122 lncRNA 0.43 5 7853544 7856941

Neighbor

gene id symbol gene type direction distance location
LOC110508434 LOC106600027 coding downstream 16277 7767544 ~ 7837267 (-)
LOC110508432 LOC106600026 coding downstream 147672 7688645 ~ 7705872 (-)
LOC110508430 LOC106600020 coding downstream 171316 7655045 ~ 7682228 (-)
stap2a LOC106600019 coding downstream 198789 7650296 ~ 7654755 (-)
ub2r1 ub2r1 coding downstream 223804 7627912 ~ 7629740 (-)
LOC110508436 LOC106600442 coding upstream 5381 7862322 ~ 7878366 (-)
LOC110508438 LOC106600038 coding upstream 26951 7883892 ~ 7980218 (-)
LOC110508437 LOC106600038 coding upstream 49460 7906401 ~ 7909755 (-)
LOC110508442 LOC106600049 coding upstream 131695 7988636 ~ 7992523 (-)
LOC110508443 LOC106600051 coding upstream 139452 7993411 ~ 8044009 (-)
G2100832 NA non-coding downstream 15151 7838136 ~ 7838393 (-)
G2100822 NA non-coding downstream 22979 7830281 ~ 7830565 (-)
G2100821 NA non-coding downstream 23677 7829644 ~ 7829867 (-)
G2100820 NA non-coding downstream 24023 7829310 ~ 7829521 (-)
G2100851 NA non-coding upstream 290 7857231 ~ 7857462 (-)
G2100940 NA non-coding upstream 67872 7924813 ~ 7935962 (-)
G2101052 NA non-coding upstream 152127 8009068 ~ 8028624 (-)
G2101155 NA non-coding upstream 199498 8056439 ~ 8056817 (-)
G2101164 NA non-coding upstream 211596 8068537 ~ 8068752 (-)
G2100707 NA other downstream 259729 7593294 ~ 7593815 (-)
G2100109 NA other downstream 647056 7203606 ~ 7206488 (-)
G2099318 NA other downstream 1414448 6426170 ~ 6439096 (-)
G2098997 NA other downstream 1614931 6238169 ~ 6238613 (-)
G2101243 NA other upstream 301278 8158219 ~ 8158518 (-)
G2101464 NA other upstream 381203 8238144 ~ 8239853 (-)
LOC118936616 LOC106600091 other upstream 624791 8480324 ~ 8522153 (-)
LOC110508274 LOC106600446 other upstream 1119911 8976699 ~ 8978156 (-)

Expression


Co-expression Network