G2100870


Basic Information

Item Value
gene id G2100870
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7883902 ~ 7886767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2403010
TCAATCATCCTGCTTTTAATACAAAGTCAACATACAATACTATCTACAACCAGGGTTTTAAAGAAAATAACAGTTACTAGGTAACAGGATATATGTGATGCCATAGAAACTGGCCCTTACTTGATGTCACATGTTTAGTCTGTGGGTCTTTCATTTCAggtatatttatattttaatcATTAAAATGTTAAGTCACACCAGATAAACTTTTGGACCCAACTTAAATTTCATATTCGGATAACTGAATTGTTAAATACTTTCCCCACCATTTGTCCCAAAATGCTATCATATACTCCTTCGATCTATAGTAGCACACTATAATTGAACAGTGTAGCATAGACTTTCAACAACTACTGTACTTTCCTCGACCGTTTAAACTCTCTATCTATGCCGCCGTATTGGCGATCGGATCGTACCACTTTAGCTATGATAATGGGGGTGGGGGGAGTCACTGAACTGGAACTAGGTCTGGCTCTAAGTATCTATCTATGAGGACATCAGTATCAAATAGCACTCTACACAGAGTGCTGTACACATTGTACTAAAGCAAataaaaaagacaattaaaaaaACATTGACGATATCATACAGTAAAATTGGCTTGCCAAGTAAACAACATCTCATTGGTTATATTCGGTTATTTTCCCAAATAAAACTATGAATAAACAAATCAACCAATAGTAAAAAATCAAGTCTTAATAACAGTAACAAAATAGAATGATAATAAATATTAAAAAATCATATCAAATAAATATTTGACAAagtcaacaataacaataaggcTCTTTTTTAAAATAATACATAATTATGcgtgttgtactgtatgtacgCCTTATGCTCAGGCCTATGTACTATAAAGAACTCTATACGTCAGACGGTATGTACAGCTCAAGTTCATGTACGATAAACCATACTGTGCTCTACAATCACGACGTATCTGGGGAAGCAGATTATAGTACATCAAATCAATAAGAGAAGAGGACAACATCTCAAGGGATGGTGGGGAATGTCGGAGTGGACTTGAGGTGAAAGCATCGAGTTGTGtcgttcgttttttttttttgtctgcacAGTAAGACTACGAGCAGAGAGAAACCGGAGCGAAGATGTAAAGAGCCACTGTGAGccgagggagagactgagaggaagagagtgggttGAGTTTGAGTTCAAACCTCTTTCTTCTACTCTCAACCCGTTGGGATTTACATTGTTTAACAAGCAAAACTAATTTCATCCAAAGCAACTCGCGGTTAACACACATATTCAGTACCATATACGTAGCCCCAagcaggaattgaacccacaaccttaaTGCTGTCATAACCCGGCTCCAACCCACTGAGCCATCAGGACCATTCCAATGTATAGTGACAATTCAAATAGGTGTTCAAATAGGTTCAATAGGTATAAGCTTCAAATAGGTGTAAGCTACATCATGACACTCAATGCTTAGCTCAGGTACATGGGATACAGCCTAAGCTGCAGAGAACCAACCAGGTGAAACATAAGGCAAAGACACCGAACCACAATGAATAGGATCCTTACAATTGTTTCTGCAGAAGCTGGAAATTGACCCCAAAAAAATACCATTATTTGAAATTCTGTTCATTCATCGAAATGGCCCTCCAAGAAAAATATAGACAACATTCAATTCATACATGGAACCCCTTGAATGACTAGCTGGGATTGACATGGAATTGCCTAATCTGTGTTTAACCTTTACTGTCATTAGGTTATGAAATATGATGTCAGCAATAGCAAGTAAGCATGGATGACCAAACATTGACTTGTAATAATATTGATCCCCACTtggagtagggtgaagttgcccccaGACACTGATCAAGGTCAATTTAGCTTTTTCAACCAAATGGTTTAGGTTACAATTTAAGGATGGtaaactgattctagatctgtgAGTTTACTGCTCATGTATTGTAAGCTGGATGTACAGATAGTAGGGCACCATTCCTCCTCATCAGAGGTCAAAGTACATTTTCCATCTGCCCAGGAACAGCGTGGTTTCTCTTGGCACTGTGGGTAGGAGAGTCTGGCGTCCAATCACGGACATGCAGCTCAAACCGTCCCTCTAGTCCTACTTTGATGTCTAGGACTAGGTTTAGTCCTCTGTCTAAAACTGTGCTCAGGTTAAGCCAGGACTAGCTCTGGCAGCAACAGACACCAGAATGCAGAACGACAGACACATGAAAACGTTCACCTTTGCACTTTCACACCTCGTACACTTAACCCATAGATAGAAAGATAATAACACAAAAACCCATTTAGGGTGCAGCAAATATCCAGGCTTTTTGTGTCCTTGTATTTTTTTACACACACATATCACAACTCCTGTTTCTGAAGCAGTTTTTGTTTTTCACTGGTTTCATTTTTGAAATAGctgaccacaacacacacaggtaTTATAAGTCCTCCACATTTTGAACACTGAGGTAAGAAGAATAAGCAGGATTACACATGTAGTAGTCTGTCTCCGACTCCCAACACACCCTTTCCAGGTCTTTCCTGAGAGCGCAGGTTTTCTTTGACATTCatctcgttgttgttgttgttgttgttttgtttgtagctGATGTTCTTGTAATAATTACTCCTTGTTAGTAGTGTCGTCCCTCAGGTGGGATTTAAGGTTCATTGTTTTGTCGTTTTCCAGCCTGCTTCTCTCGTTGGTTGTTCCTTGTTTCTCTGTGGACCTCTATCTGAgcagaaggaaggagggatgacagttcctctcctctcttaggTTGCATAGTGGTCAAAACTCCCCAGGTACTCCAGGGCAGCCTGGTAGGAGAACTGGTACTCAT
>TU2403011
TCAATCATCCTGCTTTTAATACAAAGTCAACATACAATACTATCTACAACCAGGGTTTTAAAGAAAATAACAGTTACTAGGTAACAGGATATATGTGATGCCATAGAAACTGGCCCTTACTTGATGTCACATGTTTAGTCTGTGGGTCTTTCATTTCAggtatatttatattttaatcATTAAAATGTTAAGTCACACCAGATAAACTTTTGGACCCAACTTAAATTTCATATTCGGATAACTGAATTGTTAAATACTTTCCCCACCATTTGTCCCAAAATGCTATCATATACTCCTTCGATCTATAGTAGCACACTATAATTGAACAGTGTAGCATAGACTTTCAACAACTACTGTACTTTCCTCGACCGTTTAAACTCTCTATCTATGCCGCCGTATTGGCGATCGGATCGTACCACTTTAGCTATGATAATGGGGGTGGGGGGAGTCACTGAACTGGAACTAGGTCTGGCTCTAAGTATCTATCTATGAGGACATCAGTATCAAATAGCACTCTACACAGAGTGCTGTACACATTGTACTAAAGCAAataaaaaagacaattaaaaaaACATTGACGATATCATACAGTAAAATTGGCTTGCCAAGTAAACAACATCTCATTGGTTATATTCGGTTATTTTCCCAAATAAAACTATGAATAAACAAATCAACCAATAGTAAAAAATCAAGTCTTAATAACAGTAACAAAATAGAATGATAATAAATATTAAAAAATCATATCAAATAAATATTTGACAAagtcaacaataacaataaggcTCTTTTTTAAAATAATACATAATTATGcgtgttgtactgtatgtacgCCTTATGCTCAGGCCTATGTACTATAAAGAACTCTATACGTCAGACGGTATGTACAGCTCAAGTTCATGTACGATAAACCATACTGTGCTCTACAATCACGACGTATCTGGGGAAGCAGATTATAGTACATCAAATCAATAAGAGAAGAGGACAACATCTCAAGGGATGGTGGGGAATGTCGGAGTGGACTTGAGGTGAAAGCATCGAGTTGTGtcgttcgttttttttttttgtctgcacAGTAAGACTACGAGCAGAGAGAAACCGGAGCGAAGATGTAAAGAGCCACTGTGAGccgagggagagactgagaggaagagagtgggttGAGTTTGAGTTCAAACCTCTTTCTTCTACTCTCAACCCGTTGGGATTTACATTGTTTAACAAGCAAAACTAATTTCATCCAAAGCAACTCGCGGTTAACACACATATTCAGTACCATATACGTAGCCCCAagcaggaattgaacccacaaccttaaTGCTGTCATAACCCGGCTCCAACCCACTGAGCCATCAGGACCATTCCAATGTATAGTGACAATTCAAATAGGTGTTCAAATAGGTTCAATAGGTATAAGCTTCAAATAGGTGTAAGCTACATCATGACACTCAATGCTTAGCTCAGGTACATGGGATACAGCCTAAGCTGCAGAGAACCAACCAGGTGAAACATAAGGCAAAGACACCGAACCACAATGAATAGGATCCTTACAATTGTTTCTGCAGAAGCTGGAAATTGACCCCAAAAAAATACCATTATTTGAAATTCTGTTCATTCATCGAAATGGCCCTCCAAGAAAAATATAGACAACATTCAATTCATACATGGAACCCCTTGAATGACTAGCTGGGATTGACATGGAATTGCCTAATCTGTGTTTAACCTTTACTGTCATTAGGTTATGAAATATGATGTCAGCAATAGCAAGTAAGCATGGATGACCAAACATTGACTTGTAATAATATTGATCCCCACTtggagtagggtgaagttgcccccaGACACTGATCAAGGTCAATTTAGCTTTTTCAACCAAATGGTTTAGGTTACAATTTAAGGATGGtaaactgattctagatctgtgAGTTTACTGCTCATGTATTGTAAGCTGGATGTACAGATAGTAGGGCACCATTCCTCCTCATCAGAGGTCAAAGTACATTTTCCATCTGCCCAGGAACAGCGTGGTTTCTCTTGGCACTGTGGGTAGGAGAGTCTGGCGTCCAATCACGGACATGCAGCTCAAACCGTCCCTCTAGTCCTACTTTGATGTCTAGGACTAGGTTTAGTCCTCTGTCTAAAACTGTGCTCAGGTTAAGCCAGGACTAGCTCTGGCAGCAACAGACACCAGAATGCAGAACGACAGACACATGAAAACGTTCACCTTTGCACTTTCACACCTCGTACACTTAACCCATAGATAGAAAGATAATAACACAAAAACCCATTTAGGGTGCAGCAAATATCCAGGCTTTTTGTGTCCTTGTATTTTTTTACACACACATATCACAACTCCTGTTTCTGAAGCAGTTTTTGTTTTTCACTGGTTTCATTTTTGAAATAGctgaccacaacacacacaggtaTTATAAGTCCTCCACATTTTGAACACTGAGGTAAGAAGAATAAGCAGGATTACACATGTAGTAGTCTGTCTCCGACTCCCAACACACCCTTTCCAGGTCTTTCCTGAGAGCGCAGGTTTTCTTTGACATTCatctcgttgttgttgttgttgttgttttgtttgtagctGATGTTCTTGTAATAATTACTCCTTGTTAGTAGTGTCGTCCCTCAGGTGGGATTTAAGGTTCATTGTTTTGTCGTTTTCCAGCCTGCTTCTCTCGTTGGTTGTTCCTTGTTTCTCTGTGGACCTCTATCTGAgcagaaggaaggagggatgacagttcctctcctctcttaggTTGCATAGTGGTCAAAACTCCCCAGGTACTCCAGGGCAGCCTGGTAGGAGAACTGGTACTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2403010 False 2828 lncRNA 0.40 2 7883902 7886767
TU2403011 True 2828 lncRNA 0.40 2 7883902 7886767

Neighbor

gene id symbol gene type direction distance location
LOC110508435 LOC106600034 coding upstream 26784 7842253 ~ 7857118 (+)
LOC110508433 LOC106599936 coding upstream 128139 7752516 ~ 7755763 (+)
LOC110508428 LOC106600017 coding upstream 243368 7630342 ~ 7640534 (+)
LOC110508426 LOC106600016 coding upstream 286502 7582726 ~ 7597400 (+)
LOC110508424 LOC106600007 coding upstream 346960 7532178 ~ 7536942 (+)
LOC110509206 LOC106600054 coding downstream 327085 8213852 ~ 8236601 (+)
LOC110508445 LOC106600060 coding downstream 356763 8243530 ~ 8249331 (+)
LOC110508447 LOC106600066 coding downstream 425714 8312481 ~ 8324892 (+)
LOC110508450 LOC106600084 coding downstream 504287 8391054 ~ 8408792 (+)
LOC110509209 LOC106600087 coding downstream 543000 8429767 ~ 8469976 (+)
G2100830 NA non-coding upstream 46192 7837486 ~ 7837710 (+)
G2100571 NA non-coding upstream 46576 7836985 ~ 7837326 (+)
G2100569 NA non-coding upstream 49147 7834509 ~ 7834755 (+)
G2100534 NA non-coding upstream 106760 7775658 ~ 7777142 (+)
G2100508 LOC106600027 non-coding upstream 112151 7767870 ~ 7771751 (+)
G2100936 NA non-coding downstream 94013 7980780 ~ 7981115 (+)
G2101090 NA non-coding downstream 170464 8057231 ~ 8057759 (+)
G2101091 NA non-coding downstream 171061 8057828 ~ 8058121 (+)
G2101113 NA non-coding downstream 196645 8083412 ~ 8083645 (+)
G2101116 NA non-coding downstream 198748 8085515 ~ 8085743 (+)
G2100382 LOC106600009 other upstream 319356 7539189 ~ 7564546 (+)
G2100344 LOC107579696 other upstream 455487 7427571 ~ 7428415 (+)
LOC110508407 LOC106599981 other upstream 1036914 6834257 ~ 6891325 (+)
LOC110508401 LOC106600630 other upstream 1255871 6523039 ~ 6628031 (+)
G2099116 LOC106600629 other upstream 1454965 6427205 ~ 6428937 (+)
G2101665 NA other downstream 741205 8627972 ~ 8632449 (+)
G2102205 NA other downstream 1304194 9190961 ~ 9246215 (+)
G2102343 NA other downstream 1609794 9496561 ~ 9501330 (+)
G2102469 NA other downstream 1858906 9745673 ~ 9746174 (+)
G2102608 NA other downstream 2094242 9981009 ~ 9982191 (+)

Expression


Co-expression Network