G2102729


Basic Information

Item Value
gene id G2102729
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9129789 ~ 9143732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2405098
ACTGTcttaggtctgttaggatcaccactttattttaagaatgtgaaatgtcagaataatagtagagagaatgatttatatcagatttgatttctttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgcctttcaattgtttaacttgggtcaaatgttttgggtagccttccaacaagcttcccacaataagttgggtgaattttggcccattcctcctggcagagctggtgtaactgaatcaggtttgttggCCATCCTTGCTcgcgcacactttttcagttctgcccacaaattttctatggtattgaggtcagggctttgggatggccaGTCCAATACCGTGACTGTGTGGTCCTTAAGccataacttcctgactgacatcttgagatgttgcttcaatatatccacataattacccttcacatgatgccatctattttgtgaagtgcaccagtccctcctatagcaaagcacccccacaacatgatgctgccacccctgtgcttcacggttgggatggtgttcttcggctagcaagcctcccccttttcctccaaacataacgatggtcattatggccaaacagttctatttttgtttcatcagaccagaggacatttcttcaaaaataatgatctttgtccccatgtgcagttgcaaaccatagtctggctttatggcggttttggagcagtggctttttccttgctgagcggcctttcaggttatgtcgatattggacttgttttactgtggatacagatacttttgtacctgttttctccagcatctacacaaggtcctttgctgtagttctgtgattgatttgcacttttcgcaccaaagtacattcatctctaggagacagaacgcgtctccttcctgagtgttatgatggctgtgtggtcccatggtgtttatacttgcgtactattgtttgtacagatgaacctggtacctTCCGGCGTTTGGAATTTGCTCTcaacgatgaaccagacttgtggaggtctgcaattatttttctgaggtcttggctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatcaacaggtacacctccaattgactcaaatgatgtcaattagcctaacagaaacttctaaagccatgacatcattttctggaatttcccaagctgtttaaatggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaattataagtgaaatagtctgtctgtaaacaattgttggaaaaattacttgtgtcatgcagaaagtagatgtcctaaccgacttgccaaaactatagtttgttaacaagaaatttgtggagtggttgaaaaacaagtttttatgactccaacctaagtgtatgtaaacttccgacttcaactgtacaaaatGGAATTGACTCTGTCTGTTGGCTTCTCTGTTTTCACGAGCACGTCAAGTTTTACCATTCTACCCAACTCCTTGTCTTTAGATCCTTTCATAGTGGCAAAGGAACTCTTCGCGGAGCATGAATCACTGGCTTGGCATTTTCTGTGAGAGTAATATGGTGAATGAGAGGCAATTCTCCAAATTCTGTGAACACATCAGCATATCTTTGAGCAATATCCTCACCGTTTTGATAACTTACTCACCTGGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2405098 True 1731 lncRNA 0.41 3 9129789 9143732

Neighbor

gene id symbol gene type direction distance location
LOC110508458 LOC105022262 coding downstream 6242 9107174 ~ 9123547 (-)
LOC110508456 LOC106600142 coding downstream 134043 8993922 ~ 8995746 (-)
LOC110508274 LOC106600446 coding downstream 151633 8976699 ~ 8978156 (-)
epha4b LOC106600124 coding downstream 219288 8781818 ~ 8910501 (-)
dnah9l LOC102781332 coding downstream 531522 8522163 ~ 8598267 (-)
LOC110508459 LOC106599937 coding upstream 10985 9154717 ~ 9180242 (-)
LOC110508462 lect1 coding upstream 112214 9255946 ~ 9263669 (-)
LOC110508463 LOC106600184 coding upstream 121572 9265304 ~ 9269449 (-)
trnal-caa-108 NA coding upstream 196046 9339778 ~ 9339890 (-)
LOC110508465 LOC106600202 coding upstream 230171 9373903 ~ 9392396 (-)
G2102112 NA non-coding downstream 73423 9055019 ~ 9056366 (-)
G2102088 NA non-coding downstream 127942 9001577 ~ 9001847 (-)
G2102087 NA non-coding downstream 128269 9001243 ~ 9001520 (-)
G2102083 LOC106600129 non-coding downstream 135944 8992929 ~ 8993845 (-)
G2102077 NA non-coding downstream 148567 8980992 ~ 8981222 (-)
G2102736 NA non-coding upstream 6747 9150479 ~ 9152400 (-)
G2102731 sugt1 non-coding upstream 87962 9231694 ~ 9255166 (-)
si:ch73-71c20.5 LOC103478929 non-coding upstream 304007 9447716 ~ 9453799 (-)
G2102863 LOC106600212 non-coding upstream 328897 9472629 ~ 9474007 (-)
G2102903 NA non-coding upstream 398392 9542124 ~ 9547321 (-)
LOC118936616 LOC106600091 other downstream 647376 8480324 ~ 8522153 (-)
G2101464 NA other downstream 889936 8238144 ~ 8239853 (-)
G2101243 NA other downstream 971271 8158219 ~ 8158518 (-)
LOC110508443 LOC106600051 other downstream 1130924 7993411 ~ 8044009 (-)
G2102910 nop9 other upstream 424234 9567966 ~ 9569051 (-)
G2103015 NA other upstream 632887 9776619 ~ 9776908 (-)
LOC110508473 LOC106600236 other upstream 652762 9739138 ~ 9883971 (-)

Expression


Co-expression Network