G2102731 (sugt1)


Basic Information

Item Value
gene id G2102731
gene name sugt1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9231694 ~ 9255166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2405103
ATTGGTGATCCAGaaaataaatcatttatttacattgAAGTTTGAATCACATTGAGGAAAAGGAAATTAAGACTCCAGACTTCCATTTCATGACCGTATTGCTGCTGATGTGGATAAAGAAATTATTCTACGAGTGTACAGAAAAAAAAAGGTTTCATTTTTCATGAAAGCAGTGAATGAGGCGATAGAAACATTTCCAACCTCCAACCCACCCCAGAAAAACGACAGGCTTTAAAAACAAGAACCAGCTATTGCTGAGACACAAGAAGAGGTGAAAAGGGTTTCTGTTTCAACTCATTACCGCCTTTAACCAGGTTAACCATCAAACAGCCAGAACTGACCATGAGGATGATTCCTACTGTTTCTATGAGATCTAGGAAAGACAGTTTGATATATCTATGACAGTCTTCATAGAGTGTGAGAATGGTTTAATGAGGGTAAAGACTGGTTTCTGGATTGCTGCTGAGAATCACCAAAGCTCTAAAAACCAATATTGACAGACCACTGGAAGGGGGAGGTGTTGGAAAAGGTGGGTTTTGGCGAATAAGGTGGACATCCATCGGAGgcaaagagagaatgagagagttggCCGGGAGAAAGCAATATTGACAGACGGCCTGggatgaggagtgtgtgtgtgtggggggggggggggggtagaggagataTGGGGCGGTCCACttgaggcagagagggggaacgTAGGACTGTGTagtacagagagagcgagagagacacccCTCTGGTTCTTCAGTATTTCTTAAACTCCACGTCGTCTGGAGGGCTCATCTCCACTGTTCTCTTCCCCACGTCCGTCCAGTTGGTGCTCAGGACTGTACCACCTGACTCCATAAAGGACTTGTTCATGGCCCGTTTGACCTCGTCGGTGCCGTCCCCGTAGATCTGCTGGAAGAGTTTGTTGAGCGCTGCGTCTCCCTCCAGTTTCTCCTTCTTTTCCTCCTCACTGATGTCGACCACCACCTTGTCCCAGTTACGGCTGGAGTGGGACGAAGAAGGGTACTGGTTGGGGGTGAAGTGTTTGACGCTGGGCTCCTGTCCTTCACCCTCCAGTTTCTCCCACCTGGTCCCCTCAGTCTTCTTCATTTTGATCTCCACCTTAGTGGAGAGGACCTTGAAGGTGCTGTGTTGGGGGACGATGGGATGCAGTAGGTTCATGTTCAGGCTGAAGTCCTCCCCCGACGGAAGTTTCACCACCGCCGACAACTGTCTCTCTTCGAAGTTGATGTTGACCCCATCCTTAGGCACATTTTTCACCATGATGGTGACGATGACCTGAGACTCTGTCTGGTACCAGTCATGCTTAATGTGTGGCGTCGGTGTCTTGTTCTCCTTTCCATTCTGATTGGCCATCTCCATCATCTCCTCACAGCGTTTGATCCACATTTGGAAAGTGTTATCGGAGCCGTCCAGGCTGTGTCCCTGAGTGAAGGCAGCATGTGCCGACTCGAAGTGGTTCAGGTGGAACTCTGCCATTCCTGTTCTCATGAAGGCAAGCGCAAGACTGGGGTTGAGCTGCTGGGCTTTCTTGGCATCATCGACAGCACagctgtagtTTTTCAGTTGGAGGTGGGCATAGGCTCGTTGGCAGAACCATTCTGAATTGTCTGAGTTACCTTCCAATGCTTCGTTAAGTTCCTCGATAGCTTTCTGTGGGTTCTCGTCTATGAAGCTATCGGAGAAACTGCGTTCGGATGCCATGGGGCTAGAAGTGTTGTCAGTGGGAGAAAGAGCAGAGACTAGCTAGCTGGAAAGTTCTAGATGGGAATCAGAAAACGAAACTATGCTGGAGAATGGAGCCTAAACTCTTGCGCTATAGTTCAGTCAAAGATGTGTATAagtaaaccaagatagaccactgCCTGTCATTTCCAATGGGAACTAACGAGCctcagtgggcagaacaagcagagccaagcacgaactagcgagatcctattggtgcGTTCTAGCATCATCTgaatatttccgttagggaacacaCGCTATGTGAAAcgcgcgtgtgcaataactccATTCCCCATTGCGCTCCTTCTAAACAACGCGATTTTTAACAACTTTTCCAAAGGGTAAAGTTTGCTAAACTTAATCCATTCTGTTCAGAACATATTCTAGTTTTGGAAacctgtattgagatcaaatgtttaatcgatgagaaCATTTGCCTAATGTCGaccaaaatccatctcgttccatGTGCTCGCAAGTGGGCTTCCTGTCAC
>TU2405104
ATTGGTGATCCAGaaaataaatcatttatttacattgAAGTTTGAATCACATTGAGGAAAAGGAAATTAAGACTCCAGACTTCCATTTCATGACCGTATTGCTGCTGATGTGGATAAAGAAATTATTCTACGAGTGTACAGAAAAAAAAAGGTTTCATTTTTCATGAAAGCAGTGAATGAGGCGATAGAAACATTTCCAACCTCCAACCCACCCCAGAAAAACGACAGGCTTTAAAAGAAGAGGTGAAAAGGGTTTCTGTTTCAACTCATTACCGCCTTTAACCAGGTTAACCATCAAACAGCCAGAACTGACCATGAGGATGATTCCTACTGTTTCTATGAGATCTAGGAAAGACAGTTTGATATATCTATGACAGTCTTCATAGAGTGTGAGAATGGTTTAATGAGGGTAAAGACTGGTTTCTGGATTGCTGCTGAGAATCACCAAAGCTCTAAAAACCAATATTGACAGACCACTGGAAGGGGGAGGTGTTGGAAAAGGTGGGTTTTGGCGAATAAGGTGGACATCCATCGGAGgcaaagagagaatgagagagttggCCGGGAGAAAGCAATATTGACAGACGGCCTGggatgaggagtgtgtgtgtgtggggggggggggggggtagaggagataTGGGGCGGTCCACttgaggcagagagggggaacgTAGGACTGTGTagtacagagagagcgagagagacacccCTCTGGTTCTTCAGTATTTCTTAAACTCCACGTCGTCTGGAGGGCTCATCTCCACTGTTCTCTTCCCCACGTCCGTCCAGTTGGTGCTCAGGACTGTACCACCTGACTCCATAAAGGACTTGTTCATGGCCCGTTTGACCTCGTCGGTGCCGTCCCCGTAGATCTGCTGGAAGAGTTTGTTGAGCGCTGCGTCTCCCTCCAGTTTCTCCTTCTTTTCCTCCTCACTGATGTCGACCACCACCTTGTCCCAGTTACGGCTGGAGTGGGACGAAGAAGGGTACTGGTTGGGGGTGAAGTGTTTGACGCTGGGCTCCTGTCCTTCACCCTCCAGTTTCTCCCACCTGGTCCCCTCAGTCTTCTTCATTTTGATCTCCACCTTAGTGGAGAGGACCTTGAAGGTGCTGTGTTGGGGGACGATGGGATGCAGTAGGTTCATGTTCAGGCTGAAGTCCTCCCCCGACGGAAGTTTCACCACCGCCGACAACTGTCTCTCTTCGAAGTTGATGTTGACCCCATCCTTAGGCACATTTTTCACCATGATGGTGACGATGACCTGAGACTCTGTCTGGTACCAGTCATGCTTAATGTGTGGCGTCGGTGTCTTGTTCTCCTTTCCATTCTGATTGGCCATCTCCATCATCTCCTCACAGCGTTTGATCCACATTTGGAAAGTGTTATCGGAGCCGTCCAGGCTGTGTCCCTGAGTGAAGGCAGCATGTGCCGACTCGAAGTGGTTCAGGTGGAACTCTGCCATTCCTGTTCTCATGAAGGCAAGCGCAAGACTGGGGTTGAGCTGCTGGGCTTTCTTGGCATCATCGACAGCACagctgtagtTTTTCAGTTGGAGGTGGGCATAGGCTCGTTGGCAGAACCATTCTGAATTGTCTGAGTTACCTTCCAATGCTTCGTTAAGTTCCTCGATAGCTTTCTGTGGGTTCTCGTCTATGAAGCTATCGGAGAAACTGCGTTCGGATGCCATGGGGCTAGAAGTGTTGTCAGTGGGAGAAAGAGCAGAGACTAGCTAGCTGGAAAGTTCTAGATGGGAATCAGAAAACGAAACTATGCTGGAGAATGGAGCCTAAACTCTTGCGCTATAGTTCAGTCAAAGATGTGTATAagtaaaccaagatagaccactgCCTGTCATTTCCAATGGGAACTAACGAGCctcagtgggcagaacaagcagagccaagcacgaactagcgagatcctattggtgcGTTCTAGCATCATCTgaatatttccgttagggaacacaCGCTATGTGAAAcgcgcgtgtgcaataactccATTCCCCATTGCGCTCCTTCTAAACAACGCGATTTTTAACAACTTTTCCAAAGGGTAAAGTTTGCTAAACTTAATCCATTCTGTTCAGAACATATTCTAGTTTTGGAAacctgtattgagatcaaatgtttaatcgatgagaaCATTTGCCTAATGTCGaccaaaatccatctcgttccatGTGCTCGCAAGTGGGCTTCCTGTCAC

Function

symbol description
sugt1 Predicted to be involved in protein stabilization. Orthologous to human SUGT1 (SGT1 homolog, MIS12 kinetochore complex assembly cochaperone).

NR:

description
protein SGT1 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2405103 False 2240 TUCP 0.48 13 9231694 9255166
TU2405104 True 2212 lncRNA 0.48 14 9231694 9255166

Neighbor

gene id symbol gene type direction distance location
LOC110508459 LOC106599937 coding downstream 51452 9154717 ~ 9180242 (-)
LOC110508458 LOC105022262 coding downstream 108147 9107174 ~ 9123547 (-)
LOC110508456 LOC106600142 coding downstream 235948 8993922 ~ 8995746 (-)
LOC110508274 LOC106600446 coding downstream 253538 8976699 ~ 8978156 (-)
epha4b LOC106600124 coding downstream 321193 8781818 ~ 8910501 (-)
LOC110508462 lect1 coding upstream 780 9255946 ~ 9263669 (-)
LOC110508463 LOC106600184 coding upstream 10138 9265304 ~ 9269449 (-)
trnal-caa-108 NA coding upstream 84612 9339778 ~ 9339890 (-)
LOC110508465 LOC106600202 coding upstream 118737 9373903 ~ 9392396 (-)
trnae-cuc-376 NA coding upstream 138115 9393281 ~ 9393352 (-)
G2102736 NA non-coding downstream 79294 9150479 ~ 9152400 (-)
G2102729 NA non-coding downstream 87962 9129789 ~ 9143732 (-)
G2102112 NA non-coding downstream 175328 9055019 ~ 9056366 (-)
G2102088 NA non-coding downstream 229847 9001577 ~ 9001847 (-)
G2102087 NA non-coding downstream 230174 9001243 ~ 9001520 (-)
si:ch73-71c20.5 LOC103478929 non-coding upstream 192573 9447716 ~ 9453799 (-)
G2102863 LOC106600212 non-coding upstream 217463 9472629 ~ 9474007 (-)
G2102903 NA non-coding upstream 286958 9542124 ~ 9547321 (-)
LOC110508470 LOC106600228 non-coding upstream 324018 9579184 ~ 9599623 (-)
G2102992 NA non-coding upstream 467405 9722571 ~ 9727884 (-)
LOC118936616 LOC106600091 other downstream 749281 8480324 ~ 8522153 (-)
G2101464 NA other downstream 991841 8238144 ~ 8239853 (-)
G2101243 NA other downstream 1073176 8158219 ~ 8158518 (-)
G2102910 nop9 other upstream 312800 9567966 ~ 9569051 (-)
G2103015 NA other upstream 521453 9776619 ~ 9776908 (-)
LOC110508473 LOC106600236 other upstream 541328 9739138 ~ 9883971 (-)
LOC110508476 LOC106600265 other upstream 749060 10004226 ~ 10007929 (-)
G2103203 LOC106600278 other upstream 858262 10113428 ~ 10115397 (-)

Expression


Co-expression Network