G2103629 (LOC106569449)


Basic Information

Item Value
gene id G2103629
gene name LOC106569449
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10285253 ~ 10287880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2406111
CTGCTCTTCCCCAAGACTGTCCCACATGGAGGCTACTATCGTGGACACCTCTCCAAATGTGGCGTTGGGGTTCTGGCCCTTGATGGCAGCCTGAGTGTCCCTGAAGAACAGGGCGTAGGCAGAGACGGGTTTCTGGGGCTCGTTGGGGtctttcttcttcttccccttcttccctcctccaGGCCCTGCCGTAGCGGCCACCATGGCCGGCTTGCCCCCGCCGCGCCTCACCAAGGCAggggagactgaggaggagagcaTGGGGGAAGAGGCTGGCATGGTGGAGAGGTGGGAGAGTACCgcaggggagacagacagggacatcgGAGAGTCGACCAGCACACTCTTCAGGGTGACAGCGGGACCCTGAAGTCATCCATGTCATCATCCTGGAGGGAGCCCACTGGAGAGGGCGTGGCAGACAGCTGGTCAGGTGATTTGGAACGAGACAGAATGTTCCCGCCATGAAGGCCAAGCCCGAGCTGGGCACTCAGATCTGATTGGTCAATAGTGGTTAGCTGATTGTGTCCCAATAGGCCATGATTCATGTCACCAAGTGGGACATCAATGGTCATTGGAGAGGAGCTGCTGAAATGGGAGCCAATGGAGTGGCCAAG

Function

NR:

description
TOX high mobility group box family member 4-A-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2406111 True 617 lncRNA 0.59 2 10285253 10287880

Neighbor

gene id symbol gene type direction distance location
LOC110508487 NA coding downstream 40463 10237355 ~ 10244790 (-)
LOC110508484 LOC106600289 coding downstream 89788 10178396 ~ 10195465 (-)
mmp14b LOC106600280 coding downstream 110410 10152976 ~ 10174843 (-)
dhrs1 dhrs1 coding downstream 208825 10068866 ~ 10076428 (-)
LOC118944863 NA coding downstream 225210 10058349 ~ 10060043 (-)
LOC110508490 LOC106600323 coding upstream 4131 10292011 ~ 10301368 (-)
LOC110508491 LOC106600322 coding upstream 13608 10301488 ~ 10306620 (-)
LOC110508492 LOC106600326 coding upstream 18831 10306711 ~ 10323084 (-)
LOC110508496 LOC106600349 coding upstream 99473 10387353 ~ 10414640 (-)
LOC110508497 LOC106600370 coding upstream 130647 10418527 ~ 10463830 (-)
G2103649 NA non-coding downstream 52177 10232818 ~ 10233076 (-)
G2103647 NA non-coding downstream 53673 10231362 ~ 10231580 (-)
G2103639 NA non-coding downstream 62728 10222297 ~ 10222525 (-)
G2103627 NA non-coding downstream 73306 10211731 ~ 10211947 (-)
G2103625 NA non-coding downstream 75355 10209564 ~ 10209898 (-)
G2103695 NA non-coding upstream 37078 10324958 ~ 10325299 (-)
G2103707 NA non-coding upstream 43780 10331660 ~ 10339065 (-)
G2103696 LOC106600329 non-coding upstream 53701 10341581 ~ 10385478 (-)
G2103735 NA non-coding upstream 98359 10386239 ~ 10386822 (-)
G2103736 NA non-coding upstream 108905 10396785 ~ 10397069 (-)
G2103257 NA other downstream 78577 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 169856 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 277350 10004226 ~ 10007929 (-)
LOC110508473 LOC106600236 other downstream 473395 9739138 ~ 9883971 (-)
G2103015 NA other downstream 508345 9776619 ~ 9776908 (-)
G2103920 NA other upstream 420132 10708012 ~ 10708499 (-)
LOC110508522 NA other upstream 598318 10886198 ~ 10894141 (-)
G2105419 LOC104953893 other upstream 1211246 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 5251888 15539768 ~ 15554897 (-)
G2109705 NA other upstream 5315805 15603685 ~ 15604463 (-)

Expression


Co-expression Network