G2103533 (LOC105021892)


Basic Information

Item Value
gene id G2103533
gene name LOC105021892
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10713576 ~ 10752960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2405989
TTTATTAACATCTACGGATTCTTTATTGAACATTAGCATTGAAATACTCGACTATATACTTCACACAGAGAATACAAATCTGTTATTTGGATTGGACAAGATGGCCAGCTGCAATTTTCAGTCGCAGTTAGTATCCATTATGGAGGTATTAGCTAAAGCAGCTGTAGCAGAAATAAACAAACGGGTTGATGATAGCTGTGCAGTTATACGTTTGGAAGTAACCCAAAGCCAGCGAGATATTGATGGACTGAAAAGGAAGTGTCAAATGATGGAGGGCGAGCTGAAGAAGACGCGGGGACGAGTCAGGAGAAAAGCAGAGAGATCTTTATATCCAGTCAAGATTGTTTTGAACAAGCAGAGGATTTGCTCACAGTGGAGAGACGAAGAGATGGCTGTTGAAGAGGACTCTCAACCCCAGCCTACAGATGTGGAGCAGAGAGCAAAGACTGAACCCATACTGATCAAAGATGAGGAGACGGCAGAGGATGTGTGGAAGACTGACCTTCAGGAAGAGCTCAGGATCACTGGAGAGGGTGGGTGTGACCATAAAGggtactgctctgtctgtctatggAAGACTGTGTGGGTGTGGTGTTACACACGTTGCAAGTTGCTACATTGGTGTTGGGCGTTTTATGTTC
>TU2405988
CCATTTATCATAATCTACGGATTGTTTATTGCACGTTTTACTTCACACAGAGAATTCAAATCTGTAATTTGGGCTGGACGAGATGGCAAACTGCAATTTTCAGGCGCAGTTGGTATCCATTATGGAGGTATTAGCTAAAGCAGCTGTAGCAGAAATAAACAAACGGGTTGATGATAGCTGTGCAGTTATACGTTTGGAAGTGACCCAAAGCCAGCGAGATATTGATGGACTGAAAAGGAAGTGTCAAATGATGGAGGGCGAGTTGAAGAAGACGCGAGGACGAGTCAGGAGAAAAGCTTTTTACCCCATGGCATCTGAGAAATCTTCATATCCAGTCAAGATTGTTTTGAACAAGCAGAGGAATAGCTCACAGTGGAGAGACGAAGAGATGGCTGTTGAAGAGGACTCTCAACCCCAGgTGTGCGTGGGTGTTCTCTGTGCCATCCGTGGCCCGAAGTAGTAGACCATTTATATAGCTTCATTTTCTAtcaatatttgttttctttcctggatcagctgatgatGGTCGACTATAGCACTAGACAACTGGCCTACAGCTACACCCCAATGTACATCCAATCCATCCAAAAAGTAATCTATACGTTAATGACAGTAGGCCTATAAGGTGACTCTTTTGGTTAGAAGAGGTTAACGTTGGGTTAGAAGCGTTACATTTTCCAATGGCATAGGCCTACATTATTTTGGATTTGTGTCCCCATTGGGAACTGTTTTTCATGGTGAAACATAATGAAATGTTAAATTGGCATAGTTACACTTACAGTGCATTTTCCCAGATCTCCAAGATCCATGATAGGTACAGGGTTTAAGTTCAATATTCTATTTCAATTGTTAGCCTAAATGCTTAATAATGACAAATAACACTGTCATTAATGTAAGGAAGTAGTGTTTTATGTCACAAGATCTGTGAAGACTCCAAGCATAAATTATGGACAACTCATGAACTAGGGtgtaaaacatgttttgattCAACTCATTACTTGA

Function

NR:

description
zinc finger protein 782-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2405989 False 641 TUCP 0.44 3 10713576 10718713
TU2405988 True 1002 TUCP 0.40 3 10751291 10752960

Neighbor

gene id symbol gene type direction distance location
LOC110508160 NA coding upstream 28540 10682767 ~ 10685036 (+)
LOC110508505 LOC106600388 coding upstream 34745 10669340 ~ 10678831 (+)
LOC110508506 LOC106600389 coding upstream 44738 10653059 ~ 10668838 (+)
ncstn ncstn coding upstream 93846 10601438 ~ 10619730 (+)
LOC110508503 LOC106600386 coding upstream 125257 10564205 ~ 10588319 (+)
LOC110508513 LOC106600395 coding downstream 32096 10785056 ~ 10825530 (+)
LOC110508510 LOC106600392 coding downstream 73929 10826889 ~ 10837111 (+)
LOC110508517 LOC106600398 coding downstream 84320 10837280 ~ 10842966 (+)
LOC110508521 LOC106600404 coding downstream 131554 10884514 ~ 10886212 (+)
LOC118944881 LOC106596281 coding downstream 212455 10965415 ~ 10972513 (+)
G2103525 NA non-coding upstream 4415 10708916 ~ 10709161 (+)
G2103495 NA non-coding upstream 65698 10647496 ~ 10647878 (+)
G2103492 NA non-coding upstream 69302 10644050 ~ 10644274 (+)
G2103491 NA non-coding upstream 71042 10642200 ~ 10642534 (+)
G2103490 NA non-coding upstream 71459 10641855 ~ 10642117 (+)
G2103570 NA non-coding downstream 38981 10791941 ~ 10860786 (+)
G2103572 NA non-coding downstream 48821 10801781 ~ 10807368 (+)
G2103594 LOC106600403 non-coding downstream 117292 10870252 ~ 10879952 (+)
G2103602 NA non-coding downstream 134671 10887631 ~ 10893550 (+)
G2104070 NA non-coding downstream 207203 10960163 ~ 10960706 (+)
G2103519 NA other upstream 10556 10702728 ~ 10703020 (+)
LOC110508500 LOC106600383 other upstream 190938 10510527 ~ 10524470 (+)
G2103342 LOC106600349 other upstream 321603 10391614 ~ 10391973 (+)
G2103305 NA other upstream 405603 10306831 ~ 10307973 (+)
cbln12 cbln3 other upstream 476309 10228449 ~ 10237267 (+)
LOC110508540 LOC106600420 other downstream 735800 11488248 ~ 11491159 (+)
G2104555 NA other downstream 1136156 11889116 ~ 11933092 (+)
G2106278 NA other downstream 2091427 12844387 ~ 12844904 (+)
G2106543 NA other downstream 2374002 13126962 ~ 13127231 (+)
G2106548 NA other downstream 2380439 13133399 ~ 13133761 (+)

Expression


Co-expression Network