G2103993 (LOC106600392)


Basic Information

Item Value
gene id G2103993
gene name LOC106600392
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10832777 ~ 10834647 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2406522
GTCAGTGTGTCTGCCTGGTCTTTCTCCTGGTTGTCTGGATCCTGCCTTGTATCCTCCAACAGGTCTATCGCTTCCAGTCTATTCTCTTCTTCAGCCTTGCTATGCCTAAAGACCTCTTCTGTTGGGTTACAACAATCAGGGGAATCAATGTCCAAGTGCCCAGGAGGCATTCTGGCCTCAGAACTCTGTGATAGACCAATTCCTATGGACCTGTCATCAGAAGCACTGTCCAATTGTTGTGAGGGCTTAGCAGGGAGGGACAAACCATTCTCCATGTCAGTCTGAGGCCCACTCCATGTCAGTCTATTGAACACCAAACTAGATGGTAGACTTTTACAGAACATGTCATCATcgtcctcctcatcttctctgtCGTAATCAGCATCTTCGTCGTCATTATCCTCTTCTTCAGAGGAAGAGCAGCGAGCAGGCAGGAAGGGTCTGGATATGTAAGGTAGACTCATTGACTTGTTGGCTCGTCCATATTGATCAAAGCTTAGAGGTCTGTGTGTGGGAGTTTGTGtctgcctcagtgtgtgtgtctctgtttggcAGCCTGTctgtatttgtgtctgtgtgtctacagGTGGCTGTGTGACAGAGTCTGGTTTGTCATGTGAGAGTCCAGGGGATCTCTGCTCCACTTCGTCCTCATACTCATCTTCCGCATGATGAGGCTCTACTGAGAACGCCTGGAACATCTGGGAGAAAAGAGGTTAGGATCATGACTAAATgatgaaacacacacacacacacgtgcacacgcacacaccttgGTGGAAGCACTGCTGTCCATGAGGTCCAGGAATCCAAAAGTATCCTGAAAGTCTAGTGGACAGTCCTGGACTTGTGCATCGTCCTCCTCCATCGTTGTGACATCATTTGGGGCATCCAGGGCAGTCTGCACAGAGCCTTTGATTTCTGACAATTATATGTAGATTTGACAGATTAAAACAAAAGTCCTATCCAATTTAGATTGTTAATTGCCAATTGTCAATAATTAAATTTTCACAAGTGTCAAAAACTCACTCCAAACCGGATCAATCACAGTTTCATTTCCCTTATTGCACAAATGTGTTATGATTGTTAAAATATATGAATGATACCCATGTgttctccctcttcatcctcctcttcatcgtTTTCATGGTTTACTTtatcttctcctccactctcaccctcttcacccctctcctctgatGGCTTAGATACACAGTCCCCATTCagttcctcctcctttcctctgtctTCTTTTCCTTCAACTTTATCAtccatatctctcctctcctccgatACCTCTTGATCTCTTCTCTTGACTCCGTCAGTCTCGTCCTCCCCCACAACTGCCACTCGAATGTGcctttccccttcccctccctcctgtctCACACCCTCCCCCTTATCTCCGCTCCCCTCTCCTCCGCTATGGTTTCGCCTTTCTGCACCACCCCCCTGCAGCACCCCAAAGGCCAGGCCTGATGTGATGTGAAGGGGGACGGTGACTGAGAAAGGTCCGGAGATGTGTATCCCTGCCCGCCGGTCCGCTTTGCTGGAGATTCCTGGGGATCTGGATGGGGGTTGCAGAGCCTCAGTGCTGTTGCCCCCACTACAGTGACTGCCCAGTCGACTGTATGTGCCCTTGGTTCCCCCGCCCCCGCTCACTACACTCACACTAGCCCCCTGACCCCTCCGGAAGGTCACAGCATACCCGCTGCCCACATCACTACCATTAGTGGATGCCCCTCCATCCGCACCACCTTTGGGACAGGGAGAGGGCTGAGCCAGGGGGGATATGACAG
>TU2406523
GTCAGTGTGTCTGCCTGGTCTTTCTCCTGGTTGTCTGGATCCTGCCTTGTATCCTCCAACAGGTCTATCGCTTCCAGTCTATTCTCTTCTTCAGCCTTGCTATGCCTAAAGACCTCTTCTGTTGGGTTACAACAATCAGGGGAATCAATGTCCAAGTGCCCAGGAGGCATTCTGGCCTCAGAACTCTGTGATAGACCAATTCCTATGGACCTGTCATCAGAAGCACTGTCCAATTGTTGTGAGGGCTTAGCAGGGAGGGACAAACCATTCTCCATGTCAGTCTGAGGCCCACTCCATGTCAGTCTATTGAACACCAAACTAGATGGTAGACTTTTACAGAACATGTCATCATcgtcctcctcatcttctctgtCGTAATCAGCATCTTCGTCGTCATTATCCTCTTCTTCAGAGGAAGAGCAGCGAGCAGGCAGGAAGGGTCTGGATATGTAAGGTAGACTCATTGACTTGTTGGCTCGTCCATATTGATCAAAGCTTAGAGGTCTGTGTGTGGGAGTTTGTGtctgcctcagtgtgtgtgtctctgtttggcAGCCTGTctgtatttgtgtctgtgtgtctacagGTGGCTGTGTGACAGAGTCTGGTTTGTCATGTGAGAGTCCAGGGGATCTCTGCTCCACTTCGTCCTCATACTCATCTTCCGCATGATGAGGCTCTACTGAGAACGCCTGGAACATCTGGGAGAAAAGAGGTTAGGATCATGACTAAATgatgaaacaaacacacacacacacacacgcacacaccttgGTGGAAGCACTGCTGTCCATGAGGTCCAGGAATCCAAAAGTATCCTGAAAGTCTAGTGGACAGTCCTGGACTTGTGCATCGTCCTCCTCCATCGTTGTAGGGTACGGCACATCTGTGGCAACTGCCTCATTTCTGACATCATTTGGGGCATCCAGGGCAGTCTGCACAGAGCCTTTGATTTCTGACAATTATATGTAGATTTGACAGATTAAAACAAAAGTCCTATCCAATTTAGATTGTTAATTGCCAATTGTCAATAATTAAATTTTCACAAGTGTCAAAAACTCACTCCAAACCGGATCAATCACAGTTTCATTTCCCTTATTGCACAAATGTGTTATGATTGTTAAAATATATGAATGATACCCATGTgttctccctcttcatcctcctcttcatcgtTTTCATGGTTTACTTtatcttctcctccactctcaccctcttcacccctctcctctgatGGCTTAGATACACAGTCCCCATTCagttcctcctcctttcctctgtctTCTTTTCCTTCAACTTTATCAtccatatctctcctctcctccgatACCTCTTGATCTCTTCTCTTGACTCCGTCAGTCTCGTCCTCCCCCACAACTGCCACTCGAATGTGcctttccccttcccctccctcctgtctCACACCCTCCCCCTTATCTCCGCTCCCCTCTCCTCCGCTATGGTTTCGCCTTTCTGCACCACCCCCCTGCAGCACCCCAAAGGCCAGGCCTGATGTGATGTGAAGGGGGACGGTGACTGAGAAAGGTCCGGAGATGTGTATCCCTGCCCGCCGGTCCGCTTTGCTGGAGATTCCTGGGGATCTGGATGGGGGTTGCAGAGCCTCAGTGCTGTTGCCCCCACTACAGTGACTGCCCAGTCGACTGTATGTGCCCTTGGTTCCCCCGCCCCCGCTCACTACACTCACACTAGCCCCCTGACCCCTCCGGAAGGTCACAGCATACCCGCTGCCCACATCACTACCATTAGTGGATGCCCCTCCATCCGCACCACCTTTGGGACAGGGAGAGGGCTGAGCCAGGGGGGATATGACAG

Function

NR:

description
rho GTPase-activating protein 30-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2406522 False 1799 lncRNA 0.50 3 10832777 10834647
TU2406523 True 1833 lncRNA 0.50 2 10832777 10834647

Neighbor

gene id symbol gene type direction distance location
LOC110508508 LOC106600390 coding downstream 140532 10689183 ~ 10692245 (-)
LOC110508509 LOC106600390 coding downstream 151030 10677802 ~ 10681747 (-)
LOC110508501 LOC106600384 coding downstream 292432 10535026 ~ 10540345 (-)
LOC110508159 LOC106600382 coding downstream 324428 10504714 ~ 10508349 (-)
LOC110508497 LOC106600370 coding downstream 368947 10418527 ~ 10463830 (-)
LOC110508519 LOC106600402 coding upstream 10568 10845215 ~ 10852874 (-)
LOC110508520 LOC106600403 coding upstream 34469 10869116 ~ 10884590 (-)
LOC110508522 NA coding upstream 51980 10886198 ~ 10894141 (-)
LOC110508523 LOC106600405 coding upstream 70880 10905527 ~ 10911512 (-)
LOC110508524 NA coding upstream 138123 10972770 ~ 10985411 (-)
G2103897 LOC106600396 non-coding downstream 8421 10737947 ~ 10824356 (-)
G2103970 NA non-coding downstream 22236 10810038 ~ 10810541 (-)
G2103894 LOC106600393 non-coding downstream 75440 10720152 ~ 10757337 (-)
G2103921 NA non-coding downstream 123604 10708832 ~ 10709173 (-)
G2103918 NA non-coding downstream 126848 10705726 ~ 10705929 (-)
G2105123 NA non-coding upstream 119106 10953753 ~ 10953984 (-)
G2105190 NA non-coding upstream 238543 11073190 ~ 11073427 (-)
G2105194 tada1 non-coding upstream 244047 11078694 ~ 11078982 (-)
G2105195 NA non-coding upstream 244555 11079202 ~ 11079927 (-)
G2105197 NA non-coding upstream 246087 11080734 ~ 11081223 (-)
G2103920 NA other downstream 124278 10708012 ~ 10708499 (-)
G2103257 NA other downstream 626101 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 717380 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 824874 10004226 ~ 10007929 (-)
LOC110508473 LOC106600236 other downstream 1020919 9739138 ~ 9883971 (-)
G2105419 LOC104953893 other upstream 664479 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 4705121 15539768 ~ 15554897 (-)
G2109705 NA other upstream 4769038 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 4868689 15703333 ~ 15793545 (-)

Expression


Co-expression Network