Gene
RNA
| Item | Value |
|---|---|
| gene id | G2105568 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 11737167 ~ 11744331 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Npc1 protein, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2408298 | True | 334 | lncRNA | 0.52 | 2 | 11737167 | 11744331 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110508549 | LOC106600425 | coding | downstream | 105426 | 11590108 ~ 11631741 (-) |
| LOC110508547 | pter | coding | downstream | 164700 | 11556591 ~ 11572467 (-) |
| LOC110508543 | LOC106600422 | coding | downstream | 218721 | 11515554 ~ 11518446 (-) |
| LOC110508539 | NA | coding | downstream | 273089 | 11459373 ~ 11464078 (-) |
| LOC110508163 | LOC106569415 | coding | downstream | 591929 | 11143483 ~ 11145238 (-) |
| LOC110508552 | cables1 | coding | upstream | 9744 | 11754075 ~ 11786100 (-) |
| gata6 | LOC106600428 | coding | upstream | 92316 | 11836647 ~ 11843807 (-) |
| mib1 | LOC106600429 | coding | upstream | 161795 | 11906126 ~ 11994814 (-) |
| LOC110508560 | LOC106600431 | coding | upstream | 282696 | 12019354 ~ 12129830 (-) |
| thoc1 | LOC106600433 | coding | upstream | 477763 | 12222094 ~ 12230902 (-) |
| G2105533 | NA | non-coding | downstream | 51788 | 11684745 ~ 11685379 (-) |
| G2105515 | NA | non-coding | downstream | 74559 | 11661827 ~ 11662608 (-) |
| G2105462 | NA | non-coding | downstream | 90052 | 11571542 ~ 11647115 (-) |
| G2105456 | NA | non-coding | downstream | 189670 | 11547297 ~ 11547497 (-) |
| G2105437 | LOC106600424 | non-coding | downstream | 190694 | 11537882 ~ 11546473 (-) |
| G2105591 | NA | non-coding | upstream | 44840 | 11789171 ~ 11789818 (-) |
| G2105613 | NA | non-coding | upstream | 81756 | 11826087 ~ 11826535 (-) |
| G2105641 | NA | non-coding | upstream | 138717 | 11883048 ~ 11885307 (-) |
| G2105642 | NA | non-coding | upstream | 141570 | 11885901 ~ 11886194 (-) |
| G2105643 | NA | non-coding | upstream | 142162 | 11886493 ~ 11887271 (-) |
| G2105419 | LOC104953893 | other | downstream | 237095 | 11499126 ~ 11500072 (-) |
| LOC110508522 | NA | other | downstream | 843087 | 10886198 ~ 10894141 (-) |
| G2103920 | NA | other | downstream | 1028668 | 10708012 ~ 10708499 (-) |
| G2103257 | NA | other | downstream | 1530491 | 10206063 ~ 10206676 (-) |
| G2103203 | LOC106600278 | other | downstream | 1621770 | 10113428 ~ 10115397 (-) |
| G2109663 | LOC106599735 | other | upstream | 3795437 | 15539768 ~ 15554897 (-) |
| G2109705 | NA | other | upstream | 3859354 | 15603685 ~ 15604463 (-) |
| LOC110508627 | LOC106599725 | other | upstream | 3959005 | 15703333 ~ 15793545 (-) |
| G2110939 | NA | other | upstream | 5055059 | 16799390 ~ 16799869 (-) |
| LOC110508646 | LOC106599672 | other | upstream | 5511877 | 17254319 ~ 17260420 (-) |
