G2108294


Basic Information

Item Value
gene id G2108294
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14495288 ~ 14496529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2411263
CTTTGTTGATGGGCACCAGTACATCCAGGGTCTTCTGGGGGAGGTACGGCCATATCACACTGATCTCCTTCTGTAGCTCAGTGTCCAGAGCTACTCGGTCCTCCCCACCTCATTCCCTGACCTCGTGCGATCTTGATCTCCAGGGCGGTGCGGATGAGAGACATCAAAGTGGAGGTGAAGTGGACTGACATGTCCTCATCCACTGGCATGTTCATCAACACCAgcctctgtggagagagagagagggagggagagggagagtaaacAACAGTAAAACAACAAATGAAAAAGAAGAAAATAAGTGTTTCTCCCATACCTTGTAGGCCATACCTCTGGGGCATTTCTTCCCCAGACCAAGGGGTGGAGACATATGGGTCAACATCTCATACATGGCAGTGTAGTGTATACGCCCACTACGGAAGAAACAGAGAagatgaggaaggagagagaatgagttgAGGAAAAAAGGAATTGGTAGAGGCATTCATTACGAGTTGGTGTAAATTTGAAACAGAACAAGTTGGCAAATCTTGCACAGGAATAAATGCAGTTTAGGCCTATTTAGTCTTTGGTGAATCAATACACTGCCCTCTGCTGGGCAAAGTTGAGACATGGTGGGTTTCTTATCTCTCACCATGCTGCGCGGTCGTACTCTCCCCAGACACGGACAAACTCATCCAGGTGATGAGGCCCCAGGATGGAAGAGTCTCTGGTCAGGTACTCAAAGTTATCCATGATCACAGCCACAAACAGATTCAGCATCTACACAGTCACACAAGAGGAGAGGACGTGTGAAGGACGGCATGTGTGTATGTACAAATAGACAGTATGTGCTATACTGATGTGCAcatgtgcatgcatgcatacaatAAAAATAACTGCTTTTAAGTATGAGAATGAAAAAGATGGACAGAGAGTGCTGACAGAGTGGAGAGAAAGTGTATTTGTGTAGCACAATTAAATGTACTTTGTGTATCAgtaaga

Function

NR:

description
LOW QUALITY PROTEIN: voltage-dependent R-type calcium channel subunit alpha-1E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2411263 True 984 lncRNA 0.46 2 14495288 14496529

Neighbor

gene id symbol gene type direction distance location
dtna LOC100195747 coding downstream 202739 14259507 ~ 14292549 (-)
mapre2 LOC106599798 coding downstream 242568 14234709 ~ 14252720 (-)
spidr spidr coding downstream 267546 14141124 ~ 14227742 (-)
LOC110508600 mcm4 coding downstream 357272 14123020 ~ 14138016 (-)
ub2v2 ube2v2 coding downstream 372441 14106590 ~ 14122847 (-)
LOC110508166 NA coding upstream 20276 14516805 ~ 14520970 (-)
LOC110508608 LOC106599765 coding upstream 119388 14615917 ~ 14625901 (-)
LOC110508612 LOC106599764 coding upstream 133006 14629535 ~ 14652591 (-)
LOC110508613 NA coding upstream 264948 14761477 ~ 14762622 (-)
LOC110508618 LOC106599747 coding upstream 455184 14951713 ~ 14971756 (-)
G2108233 NA non-coding downstream 74673 14420392 ~ 14420615 (-)
G2108229 NA non-coding downstream 81965 14413106 ~ 14413323 (-)
G2108173 NA non-coding downstream 83806 14411166 ~ 14411482 (-)
G2108169 NA non-coding downstream 85213 14409738 ~ 14410075 (-)
G2108143 NA non-coding downstream 109603 14373403 ~ 14385685 (-)
G2108298 NA non-coding upstream 8376 14504905 ~ 14505210 (-)
G2108302 NA non-coding upstream 13239 14509768 ~ 14515674 (-)
G2108319 NA non-coding upstream 28929 14525458 ~ 14525717 (-)
G2108545 NA non-coding upstream 111964 14608493 ~ 14611820 (-)
G2108574 NA non-coding upstream 183384 14679913 ~ 14680244 (-)
G2105419 LOC104953893 other downstream 2995216 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 3601208 10886198 ~ 10894141 (-)
G2103920 NA other downstream 3786789 10708012 ~ 10708499 (-)
G2103257 NA other downstream 4288612 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 4379891 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 1043239 15539768 ~ 15554897 (-)
G2109705 NA other upstream 1107156 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 1206807 15703333 ~ 15793545 (-)
G2110939 NA other upstream 2302861 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 2759679 17254319 ~ 17260420 (-)

Expression


Co-expression Network