G2108302


Basic Information

Item Value
gene id G2108302
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14509768 ~ 14515674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2411278
tccaaatggacaatgaccccaagcatactgccaaagttctggcaaaatggtttaaggacaacaaagtcatcaCAAAggactgacctcaatcccatagaacatttgtgggtagaactgaaaaagcatatgcggcaaggaggcctacaaacctgactcagttacaccagttctgtcgggaggaatgggccaaaattcacccaacttattgtgggaagcttttggaaggctatccgaaacgtttgacccaagttaaaccatttataggcaatgctaacaaaaactaattgagtgtatgtaaacttctgacccaatgggaatgtgatgaaagaaatcaaagctgatataaatcattctctctcctattattgacatttcacgttcttaaaataaagtggtgatcaaaCTAACCTaacacagggaatttttactaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccaacttcaactgtaaataaggtttttgttttaatatatttatatatatatatatacacatacacacatttgcaaaatgtctaactctataatgacaaagagaaaacaggttattgtgtgtagaatgatgggGGATTTTTCAAAtgtaatccattgtagaataatgtggaaaaagtcaagtggtctgaatactttccaaatgcactgtaaatcttCTCCCTCTTGCACTTTATATCTCTGGGACAGAGTTTTGCAGATGCATAGTCAAAACCAGTGTAAACTCTAATGGCCAAAACTTTTATCTCCTACAAACACAATGACAAACAATACATCTAAAGGTAGGAGATATACAAacatccagtggtgtaaagtaatacttaagtagttttttggggtatctgtactttaatatttatatttttgactactattACTtcgctacattcctaaagaaaacaatgttttttttactccatacattttacatgacacccaaaagtactcgttacattttgaatgcttagcaggacaggaaaatggtccaatgcgcgcacttatcaagagaacatccctggtcatccctactgcctctgatctggcagactcaataagcacaaatgctttgtttgtaaattatgtctgagtgtgcccttgtctatccgtaaatttaaaaaacaagaaaatggtgccttctggtttgcttaatataaggaatttgaaatgatttatactttacatttgatacttaagtatattttagcaattacatttacttttggtacttaagtatatttaaaaccaaatactcttgaacttttactcaagtagtattttactgggtgacttttacttgagtcattttctattaaggtatctttatttcttactcaagtatgaatttgggtactttttccaccagtgCAAACATAAATACAGAAAAGGGTATCATTATAATATAAACTAAACATTTAACGGAAATAATTCACCGCAGCAGCAGTTAcaaacatacatatatatatatatatataaaaagcgACAAACAAAAAAGGAAATCATAGTGTATGTAAAAACAGCCAGAACGTATTTTTGCGCAATGATGTATTGACTGTGGGAGAAGACTGAAAATACAGATAAGTAAGCTAAGTACTTAAGGGAAGAAATTCCACTATTCTTATTGTCTCCCCTTCTCCCAGTCGCtttcacacaaaaacacacactagGATCAAGACAAGCAAAACAAAGCAGAGACTCACTCTACTGAATCACACAATTCATGAATATATATTCAGCTATTGAGCTTTTCTTTAATGTGATAAGTGACCAATGGTAGCATTGATACCATTATCAATATCAATCCTAACTTCTGTGCtgcaaaaataataaataatattgaAAAGTGCAAggttatagatatagatatatattaacaTAATGCTTCCGTTAATGTCCTATAAGTAAAGTGCAAATCTCGGGATCAGATTTAATGTGTGTGCAAGCATTCCTAACTTCTAGACTGATCCTCCACCACATGCACAAACGAGCCCTTTACATTGGCTGACAGCTATGTTAATCCTCTAAAAGTAAAACATATGAACCTTACACAGGGTGACTGACATACAAATCTGAATGGCAAAACAAAAGCCAATGCATGTAGTACATAGTCTAATAAAGGATGGACTTTGGGTGATTTCTGCACTGTGTATGTGCATACTATAGTTACTTTGTTGTAAGCCTAAAGAATACTATGCTCTGTAACTTATTTTACTTTGCAACTGTAACACTAAAACAGGGTAAGCTTCAGTCCATAGAGAGATACCGATTATTACGCCACCATGCCGGCTTTCCTGGGGCTTTTTTACCCTTACTAAGCCATATTCAGAGTGCAGGATTTGGAGACTTTAGAAGACAGATGAGTCATGTCATGGTGTTGCCAGCTGTGGCTTTTAGAGGAATCTGATAGGATACCTCCTGGTGGACAAATTCAGACGACAGAGAATTATCCAATCCCATTTCCAGCTACTAATCATGGTGAACAAAATGCTGGGATGGGATACCACCGAGACCTGCTCAAGTGGAACTGCAGTGAGCCATCACTACGGTAacagccccctcctcctccttcccaccATAACATCACCAACCCAGgcctactgtattcaacagctggcTCAGGAACCCAGtccaccacagacacacaaacatattttgcatGCTTGTCCTCCTATGTCCTCCATGACTCAGCCTGTTCAGTTCAGAGCCAGTTCCAGGTGATGGGCGGATGGGTCAAAGTCTTTTCATTGTTAATCACTAGTGTTcgcatagtctctctctctctctatgtcatcACCGACCAAGACACCATGCTACTCGTTATCCCAAAGTTAAAagcagaggggaggagggcaGCGTGTGTATGTATTTGTTGGGGCTGGTGGAGGTGGCGCTGTAAGAAGTCTGTGatggttgtagtgtgtgtgtgtgtgtgtgtgtgtgtaggggtgcgGCTTTGCGGAGCTCATCATAATGGGGTAGGGTTGTCTTAGGGGTCAGTTGGTCTCGTAGGTGGAAAGCAGGGCAGCATCCACAGGCTCCATGCAGGAGGGGCAGGTGAAGGACCTCATCAGCCAGTCATCTATACAGTCCATGTGGTAAATGTGCATACAGGGCAGGAACCGGATGGGGTCCCCGTACACAAAGTCCATCATACA
>TU2411279
TTCCAAAAATCAagattacatttattttcagaTTCCTGAACAAAAAAAAGAAGCAaaagatgtaaaaaaaacatttacttttcccacattgttacattacagcctcattgattcaattgtttcatcaatctacacacaataccccacaataacaaaagcaaaaactgtttcttacattttggcaaatgtattaaaaataaaaaacgtatcacatttacataagtattcagtactttgttgaagcacctttggcagcgattacagcctccagtcttcttgggtatgatgctgcaagcttggaacgcctgtatttggggagtttcccccattcttctctgcagatcctctcaatctctgtcaggttggatggggagcgtcgctacacagctattttcaggtctctacagagatgctagatcgggttcatgtccgggcattagctgggccactcaaggacattcagagacttattcgaagccactcctgcgttgtcttggctgtgtccttAGGGTCGCTctcctgttgtaaggtgaaccttggcctcagtctgaggtcctgagcgcgtcggagcaggttttcatgaaggatcactgcactttgctccgttcatctttcgcTCGATTCTGAcaggtctcccagtccctgtagTTTCCTGCAgcagtgatgcttggcattcaggccaaatagttaaatctaggtttcatcagaccagagaatattgtttttcacggtctgagagtctttaggtgttttttggcaaactcaaagcgggctgtcatgtgccttttactgagaggTGGCTTCCATCAGGCCACTCTAACCTAAAGAACTGATtggaggagtgctgcagagatggatgtccttctggaagtttctcccatctccacagagaaactctggagctttggcagtgaccatcggcttcttggtcacctccctgaccaaggcccttctcccctgattgatcAGTTGGGCCGGGTGGCCAGCtgaaggaagagtcttggtggttccaaacttcctctatgtaagactgatggaggccactgtgttcttggtacccttccacacatctgtgccttgacacaatcctgtctcggcgctctacggacaattccttcgacctcatggcttggtttttactctgacatgcactgtcaactgtgggaccttatatagtcaggtgtgggcctttccaaatcatgtccaatcaattgaatttagcacaggtggactccaatcaagttgtagaaacatctcaaggatggtcaatagaaacaggatgcacctgagctcaactttgagtctcacagcaaaggatctgaatacttatttacagttgaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacaaatttgttaacacactatagttttggcaagtcggttaggacattactttgtgcatgacaaaagtcatttttccaacaattgttcacagacagattatttcacttgcaattctctgtatcacaattcctgtgggtcagaagtttacatacactaagttgacttgtGTTTAAATagttggacaattccagaaaatgatgccatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggcataccttcaaactcagtgcctctttgattgacataatgggaaaataaaaataaatcagccaagacctcagaaaataaattgtagaacttcacaagtctggttgatcctcgggagcaatttccaaacacctgaaggtaccacgttcatctgtacaaacaatattacgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagatgcattctgtctcctggagatgaacgtacttcggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctgtatcgacataacctgaaatgccgctcattAAAAAAGctggactacggtttgcaactgcacatggggacaaagatcatactttttggagaaatatcctctggtctgataaaacaaaaatatctgtttgaccataatgacca
>TU2411281
GTGCTTTCTGGTTTATTTTATACAGATTCAATATGGCCTTCCAAAAATCAagattacatttattttcagaTTCCTGAACAAAAAAAAGAAGCAaaagatgtaaaaaaaacatttacttttcccacattgttacattacagcctcattgattcaattgtttcatcaatctacacacaataccccacaataacaaaagcaaaaactgtttcttacattttggcaaatgtattaaaaataaaaaacgtatcacatttacataagtattcagtactttgttgaagcacctttggcagcgattacagcctccagtcttcttgggtatgatgctgcaagcttggaacgcctgtatttggggagtttcccccattcttctctgcagatcctctcaatctctgtcaggttggatggggagcgtcgctacacagctattttcaggtctctacagagatgctagatcgggttcatgtccgggcattagctgggccactcaaggacattcagagacttattcgaagccactcctgcgttgtcttggctgtgtccttAGGGTCGCTctcctgttgtaaggtgaaccttggcctcagtctgaggtcctgagcgcgtcggagcaggttttcatgaaggatcactgcactttgctccgttcatctttcgcTCGATTCTGAcaggtctcccagtccctgtagTTTCCTGCAgcagtgatgcttggcattcaggccaaatagttaaatctaggtttcatcagaccagagaatattgtttttcacggtctgagagtctttaggtgttttttggcaaactcaaagcgggctgtcatgtgccttttactgagaggTGGCTTCCATCAGGCCACTCTAACCTAAAGAACTGATtggaggagtgctgcagagatggatgtccttctggaagtttctcccatctccacagagaaactctggagctttggcagtgaccatcggcttcttggtcacctccctgaccaaggcccttctcccctgattgatcAGTTGGGCCGGGTGGCCAGCtgaaggaagagtcttggtggttccaaacttcctctatgtaagactgatggaggccactgtgttcttggtacccttccacacatctgtgccttgacacaatcctgtctcggcgctctacggacaattccttcgacctcatggcttggtttttactctgacatgcactgtcaactgtgggaccttatatagtcaggtgtgggcctttccaaatcatgtccaatcaattgaatttagcacaggtggactccaatcaagttgtagaaacatctcaaggatggtcaatagaaacaggatgcacctgagctcaactttgagtctcacagcaaaggatctgaatacttatttacagttgaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacaaatttgttaacacactatagttttggcaagtcggttaggacattactttgtgcatgacaaaagtcatttttccaacaattgttcacagacagattatttcacttgcaattctctgtatcacaattcctgtgggtcagaagtttacatacactaagttgacttgtGTTTAAATagttggacaattccagaaaatgatgccatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatttcaaggcataccttcaaactcagtgcctctttgattgacataatgggaaaataaaaataaatcagccaagacctcagaaaataaattgtagaacttcacaagtctggttgatcctcgggagcaatttccaaacacctgaaggtaccacgttcatctgtacaaacaatattacgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagatgcattctgtctcctggagatgaacgtacttcggtgcgaaaagtgcaaatcaatcccagaacaacagcaaagga
>TU2411283
tggtcaaaagaccaattaaaaaaaaatctgaattgggctgcctatgGCAAGTGACTTTCAAACACCATGGCCACGATAATAACAgctaaaaaaacaacaaaggagcaagatatactgtatgtactgtgttgATAGAGCTAGCTTTAAAGGGGAAATGTGACACTGTGACACTGTACTACCATCTGGTGTAACAAAAAGATACTACAGTCTCAGAACACACAATAATTCAGGGATTACCCAAGTGTGTGCTTTCTGGTTTATTTTATACAGATTCAATATGGCCTTCCAAAAATCAagattacatttattttcagaTTCCTGAACAAAAAAAAGAAGCAaaagatgtaaaaaaaacatttacttttcccacattgttacattacagcctcattgattcaattgtttcatcaatctacacacaataccccacaataacaaaagcaaaaactgtttcttacattttggcaaatgtattaaaaataaaaaacgtatcacatttacataagtattcagtactttgttgaagcacctttggcagcgattacagcctccagtcttcttgggtatgatgctgcaagcttggaacgcctgtatttggggagtttcccccattcttctctgcagatcctctcaatctctgtcaggttggatggggagcgtcgctacacagctattttcaggtctctacagagatgctagatcgggttcatgtccgggcattagctgggccactcaaggacattcagagacttattcgaagccactcctgcgttgtcttggctgtgtccttAGGGTCGCTctcctgttgtaaggtgaaccttggcctcagtctgaggtcctgagcgcgtcggagcaggttttcatgaaggatcactgcactttgctccgttcatctttcgcTCGATTCTGAcaggtctcccagtccctgtagTTTCCTGCAgcagtgatgcttggcattcaggccaaatagttaaatctaggtttcatcagaccagagaatattgtttttcacggtctgagagtctttaggtgttttttggcaaactcaaagcgggctgtcatgtgccttttactgagaggTGGCTTCCATCAGGCCACTCTAACCTAAAGAACTGATtggaggagtgctgcagagatggatgtccttctggaagtttctcccatctccacagagaaactctggagctttggcagtgaccatcggcttcttggtcacctccctgaccaaggcccttctcccctgattgatcAGTTGGGCCGGGTGGCCAGCtgaaggaagagtcttggtggttccaaacttcctctatgtaagactgatggaggccactgtgttcttggtacccttccacacatctgtgccttgacacaatcctgtctcggcgctctacggacaattccttcgacctcatggcttggtttttactctgacatgcactgtcaactgtgggaccttatatagtcaggtgtgggcctttccaaatcatgtccaatcaattgaatttagcacaggtggactccaatcaagttgtagaaacatctcaaggatggtcaatagaaacaggatgcacctgagctcaactttgagtctcacagcaaaggatctgaatacttatttacagttgaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacaaatttgttaacacactatagttttggcaagtcggttaggacattactttgtgcatgacaaaagtcatttttccaacaattgttcacagacagattatttcacttgcaattctctgtatcacaattcctgtgggtcagaagtttacatacactaagttgacttgtGTTTAAATagttggacaattccagaaaatgatgccatggctttagaagcttctgataggctaattga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2411278 False 3204 lncRNA 0.39 2 14509768 14513005
TU2411279 False 2169 lncRNA 0.43 1 14513223 14515391
TU2411281 False 2003 lncRNA 0.43 1 14513427 14515429
TU2411283 True 1909 lncRNA 0.42 1 14513766 14515674

Neighbor

gene id symbol gene type direction distance location
dtna LOC100195747 coding downstream 217219 14259507 ~ 14292549 (-)
mapre2 LOC106599798 coding downstream 257048 14234709 ~ 14252720 (-)
spidr spidr coding downstream 282026 14141124 ~ 14227742 (-)
LOC110508600 mcm4 coding downstream 371752 14123020 ~ 14138016 (-)
ub2v2 ube2v2 coding downstream 386921 14106590 ~ 14122847 (-)
LOC110508166 NA coding upstream 1131 14516805 ~ 14520970 (-)
LOC110508608 LOC106599765 coding upstream 100243 14615917 ~ 14625901 (-)
LOC110508612 LOC106599764 coding upstream 113861 14629535 ~ 14652591 (-)
LOC110508613 NA coding upstream 245803 14761477 ~ 14762622 (-)
LOC110508618 LOC106599747 coding upstream 436039 14951713 ~ 14971756 (-)
G2108298 NA non-coding downstream 4558 14504905 ~ 14505210 (-)
G2108294 NA non-coding downstream 13239 14495288 ~ 14496529 (-)
G2108233 NA non-coding downstream 89153 14420392 ~ 14420615 (-)
G2108229 NA non-coding downstream 96445 14413106 ~ 14413323 (-)
G2108173 NA non-coding downstream 98286 14411166 ~ 14411482 (-)
G2108319 NA non-coding upstream 9784 14525458 ~ 14525717 (-)
G2108545 NA non-coding upstream 92819 14608493 ~ 14611820 (-)
G2108574 NA non-coding upstream 164239 14679913 ~ 14680244 (-)
G2108577 NA non-coding upstream 168472 14684146 ~ 14696693 (-)
G2108693 NA non-coding upstream 334326 14850000 ~ 14850206 (-)
G2105419 LOC104953893 other downstream 3009696 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 3615688 10886198 ~ 10894141 (-)
G2103920 NA other downstream 3801269 10708012 ~ 10708499 (-)
G2103257 NA other downstream 4303092 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 4394371 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 1024094 15539768 ~ 15554897 (-)
G2109705 NA other upstream 1088011 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 1187662 15703333 ~ 15793545 (-)
G2110939 NA other upstream 2283716 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 2740534 17254319 ~ 17260420 (-)

Expression


Co-expression Network