G2108327


Basic Information

Item Value
gene id G2108327
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14582076 ~ 14590000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2411344
ctttcaattaaataaacaaatttccgttactgtgcgactactctatccacagataaagagcctcattgccaaatccagaactatccctttaatgactgatcttagctgtcctgatttgcatattcccagaatttcactTCACAACCAGAGACAACTGTACCTAtgattgttcattaacaaaaaattatcatatgtaaagtatatactttgcccatgattttttttaagttgttgtaaaaccataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2411344 True 246 lncRNA 0.33 2 14582076 14590000

Neighbor

gene id symbol gene type direction distance location
LOC110508607 LOC106599774 coding upstream 70881 14507547 ~ 14511195 (+)
LOC110508606 LOC106599779 coding upstream 77822 14428971 ~ 14504254 (+)
klhl14 LOC106599787 coding upstream 184979 14353445 ~ 14397097 (+)
cebpd LOC100379114 coding upstream 441391 14139650 ~ 14140685 (+)
snai2 snai2 coding upstream 607622 13971888 ~ 13974454 (+)
LOC110508609 LOC105019392 coding downstream 18465 14608465 ~ 14615388 (+)
LOC110508610 LOC106599772 coding downstream 36005 14626005 ~ 14627454 (+)
LOC110508614 LOC106599757 coding downstream 184001 14774001 ~ 14881880 (+)
LOC110508616 LOC106599750 coding downstream 338691 14928691 ~ 14941630 (+)
exosc4 exos4 coding downstream 353509 14943509 ~ 14945337 (+)
G2108315 NA non-coding upstream 59470 14522268 ~ 14522606 (+)
G2108304 NA non-coding upstream 65294 14516542 ~ 14516782 (+)
G2108303 NA non-coding upstream 65895 14515947 ~ 14516181 (+)
G2108182 NA non-coding upstream 160494 14421051 ~ 14421582 (+)
G2107836 NA non-coding upstream 343500 14237200 ~ 14238576 (+)
G2108492 NA non-coding downstream 261143 14851143 ~ 14851398 (+)
G2108494 NA non-coding downstream 262400 14852400 ~ 14852621 (+)
G2108733 NA non-coding downstream 322977 14912977 ~ 14913183 (+)
G2108748 NA non-coding downstream 337452 14927452 ~ 14927734 (+)
G2107033 NA other upstream 668849 13911427 ~ 13913227 (+)
G2106557 NA other upstream 1438481 13143313 ~ 13143595 (+)
G2106549 NA other upstream 1447591 13133894 ~ 13134485 (+)
G2106548 NA other upstream 1448315 13133399 ~ 13133761 (+)
G2106543 NA other upstream 1454845 13126962 ~ 13127231 (+)
G2109948 NA other downstream 1348511 15938511 ~ 15938857 (+)
G2109955 LOC106599720 other downstream 1358308 15948308 ~ 15948861 (+)
G2110507 LOC107717027 other downstream 1858112 16448112 ~ 16448502 (+)
LOC110508278 LOC106599701 other downstream 2222594 16809471 ~ 16813125 (+)
G2111044 NA other downstream 2363784 16953784 ~ 16958852 (+)

Expression


Co-expression Network