G2108545


Basic Information

Item Value
gene id G2108545
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14608493 ~ 14611820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2411568
GACATGGGGTTTGGTGTTGGGAGAAGTCCTACCTGTGGATTAGACATGGGGTTTGGTGTTGGAAGGAGACCTCCTCCGGGCAGAATCCCTGCAACAGCATTTGCTGGCGCCAGCAGTGACAAAGCTTTAGCCTCCTCCGGGATAACACCTACAGAAAAACCAAACAGGCATTAGGGGAAGAAGAGAACATCAACGTCTAGACTCTACAGAAAAGGAGAGacattttgaaaaacaaaaaaaacagatgaCTTGCTCAAGTATTCTTTAAAAACATTTGTAAAGGTTTCAATACTGTTACCTTTGATAGCTGCTAGATTTGAGAAGGTTTGTTCCCTTTATTATTTTAACCAGTGTAGATTGAAAAATAACTACGATCGGGAAAATAGTATATCACAATACACACTACTCCAGTGAACACTGCCAAGATTGTATCACCTGAACGTGTTTTTTAAGTCATGAACCAAACGTTAGCTAGCACAGCGGCTTCTCCAGTGGGGTGTGCTCTCAATTTTCATTTAGATTGAACAAGCGACTCACGTTGGCGGCTTCACTACTAAGGAGCACACAGAGAAAAATCGAGATACACAAAACAAAAAGAATTTCAGAGAGTTGGAGGTCAACAGTGATTACTGACATTTTCTACTACTTACCAGCAATACAGTTATAAGTAGGAAAAAAAACCCCCAGCTAGCATTCACATTTTGGGTAGGTGATATCTACGCTCCCAAGAACCTTACCTGTCACTGCATTAAATATGCAACAAATGAACCAATGCCTTTTATTTATGTGTAAAATCAACTTGGCAACATTAGATTAGCTTGTTTGCCTAACATAGTGatcagaaaaagaaaaaaaaactatgGTTTCAGATCTCAATGTTGCCATTGCTACCtaaaaaaagaaaacatagaaTATCTTAATCAAGATACAATagcaaaaataacatttttttttttttacagaagacacacaaacacactcacaaacaACATTTAAAAAGGGCACACGGGGGAGAGAATTTAGCTGCAGGAGACAAAACGGTTGGGTGGTATTTTCAGCGGGGCCTGGTATACAGGACTGGCTGAGCCAGGAAAAAGAActgtaaaacacaacaacaaaaaagaaagaCCACTGTTAAAGAGAGAGCACTGAACCAGTTGCCATTGCCATGTGGGGTGGATATCTAAGACAATTAACAACTAGATACAGTCAGGAACCTTAAAGTACAACATAGAAAACACACAGATTTGCTATTTTAATCCGCCAATTTCAGGGACAGAGTGGTGAGTGAGTGCATGTAATTTCTTGCTAAATTTAAATTGGATACTATTGGCCACCCAATTCCCCAAACCAGGAAGTGCCTTAACgctaaaggtgaaaaaaatatgaaatgcaGGTATACCAATAGCTGTGTTATTGAGAAGTGTATAGTTTACTGTTATGTTACTCTGCTATGGTTTACTTCTTACCACTTGGATCCAATGAGAAAACCAGATTGGACATTATACAGGTCAGATTATTAACACACCTGTTTTGATAAATATGTACTTGTGAGCAGTCAAGAAATATTTGTGTAATACATGTGATATGCATTATAGTATTAACAGTTATATATATGCTACTGCATTCAATTTAAACTAAAATACCCTAAagaagagaaaatgagagagaaagagagaagaaaggacaCAGGAAAAAAGAGAAAGAAGGGTCTGGGGGGGCTGCTTGAACGCTTGCTGGCCTTTTGTAAATGCCTACAATCCCCTGTTGGCAGGCAGAGGACCACTTTCAGCCATCAAGGAGGGGGCTCTGCTTTTGCCTTCTCCACTAcaacaaatcacacacacaaataacagAGAGAAGTTTAATAGAGGATAGTCCAATATGGGGGAGAAAATAAAAAGCATGGTTAAGTTTTTATACACATGTAAGTTCATCTCTGCTTTCTTTTGAGGAGGTGCGTCTGTCTGCCCATGGGTCTGGGCTTGTTCAGCCCTCTCAGTCGGAGCAAGTCCCAGTCCCTAAAGCAGACCTTGGTATACTGTGCTGGTGGAGGAGGACAAAGAATTGGCTCTGgagactactacagactactcaAGGTCATCTGTGTTGTTTAGTGTCTACCAAGTCCAACGCATCATGGATGACATTATGACCTTACAGTGTGGCAGAAACTTTATATAAGACATACGTGTATGGTTATAGGTTTGGTCTTTAGTTCCACAGTATACCAAGGGTCTGGGTTGTGAGAGCTGGTATAGACACCTCTCTCATTGCAATTAGCAGAGGGATCGTACAAGATAGGACAGGAAGAGTGGCATGACATCATTGACCACAGAATCAGATAGGCTTGTCAGATGAAAAATGGTTACTATTCAATTCAATGgggtttattggcatgggaaacatatgtttacattgccaaagcaagcgaAACTGATATAATCTGAAATAGTTAGGATACACGCTTAACAGTGGCTCAAGCCACAGGCTCATATTACTCCATCCTGAAATCAATGGGGGCGTCAGGCGTCACTCTCCCATCACTACATCATACAATCAAGGATCATTCATACAGAAAGGGAAGAACAAATCACCAACCTTCGGCAAAAGGGACGACGATCAGCGCCCTGTCCACGAAGACTGTGTTGGTCAGATGTTGAGACACCCCCACGGACTCGGACTCTTTGAACTTCACAAAACACACACGCGACGTCACTGGCAGAGGCGACTCACCTCTCTATTTCAGAAGTATTATTGTATAAATATAGCCAATTAGTTGCTATCCTCGTCGAAGGCGTTTTATAAACTCAAATAAAGATCTCGATTCGTTTCGCCGCCATGTTGTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2411568 True 2850 lncRNA 0.41 2 14608493 14611820

Neighbor

gene id symbol gene type direction distance location
LOC110508166 NA coding downstream 87523 14516805 ~ 14520970 (-)
dtna LOC100195747 coding downstream 315944 14259507 ~ 14292549 (-)
mapre2 LOC106599798 coding downstream 355773 14234709 ~ 14252720 (-)
spidr spidr coding downstream 380751 14141124 ~ 14227742 (-)
LOC110508600 mcm4 coding downstream 470477 14123020 ~ 14138016 (-)
LOC110508608 LOC106599765 coding upstream 4097 14615917 ~ 14625901 (-)
LOC110508612 LOC106599764 coding upstream 17715 14629535 ~ 14652591 (-)
LOC110508613 NA coding upstream 149657 14761477 ~ 14762622 (-)
LOC110508618 LOC106599747 coding upstream 339893 14951713 ~ 14971756 (-)
LOC110508622 LOC106599742 coding upstream 701883 15313703 ~ 15315936 (-)
G2108319 NA non-coding downstream 82776 14525458 ~ 14525717 (-)
G2108302 NA non-coding downstream 92819 14509768 ~ 14515674 (-)
G2108298 NA non-coding downstream 103283 14504905 ~ 14505210 (-)
G2108294 NA non-coding downstream 111964 14495288 ~ 14496529 (-)
G2108233 NA non-coding downstream 187878 14420392 ~ 14420615 (-)
G2108574 NA non-coding upstream 68093 14679913 ~ 14680244 (-)
G2108577 NA non-coding upstream 72326 14684146 ~ 14696693 (-)
G2108693 NA non-coding upstream 238180 14850000 ~ 14850206 (-)
G2108694 NA non-coding upstream 238813 14850633 ~ 14850869 (-)
G2108696 NA non-coding upstream 240492 14852312 ~ 14852556 (-)
G2105419 LOC104953893 other downstream 3108421 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 3714413 10886198 ~ 10894141 (-)
G2103920 NA other downstream 3899994 10708012 ~ 10708499 (-)
G2103257 NA other downstream 4401817 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 4493096 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 927948 15539768 ~ 15554897 (-)
G2109705 NA other upstream 991865 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 1091516 15703333 ~ 15793545 (-)
G2110939 NA other upstream 2187570 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 2644388 17254319 ~ 17260420 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G138664 NA non-coding CI01000027 null 2253548 ~ 2253749 (+)
eurasian perch (Perca fluviatilis) G116893 LOC104955993 non-coding NC_053122.1 CM020919.1 21997794 ~ 22002858 (-)
tiger barb (Puntius tetrazona) G106637 NA non-coding NC_056713.1 CM032082.1 14081810 ~ 14083998 (-)
mexican tetra (Astyanax mexicanus) G116629 NA non-coding NC_035909.1 CM008312.1 37252216 ~ 37252761 (-)