G2108922


Basic Information

Item Value
gene id G2108922
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14943706 ~ 14945260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2411966
ctccATCTGCTCCCTTACCTCCCCTGCCTTTCACGCAGACCAATCTACCCCAAAGTCCAAGCTACATCACTCTCCAGTCAGCGCAGACACCTCCTGTAGATGCTGCCTCACCACCTCGTCCAACACTTTGCTGACGCCCTTACAGGCCGTCATTGCAGCCTCCATCAGTGTCTCTAGGTGGTCCTGGTGGAGTCGGGCGTCCATCTGTAGCAGGGCAATGTGCCCGCCACGAGGCAACAATGCCAGGGCCAGTGATGTGCCCCCTCCACTCTCTTCAGCATGGCACAGGTCTGCCAATGGGGTCTCATCCACAAAGCCTGCAGTGCAGGCGCACACATAGTCACGCATGGGGATGCCCGCATCGACTACTGCCAGAGTAGCGGCGTTCACACACGCGCTGTAGTTTCCTCCATCTGACTGCAAGAtCTTGACATAAATGTCTATTTGAGAGCGTGGGTACAGATTAGTCAACACTGCTGCCTCGAAAGTCTGCTTGAGGTGAAGGCTCATCTCTGTGGACTTGCGGTCCCCGTGGGGTCTTCTCTTCCTTTCAGCTGTACTGAAGGTAGCCATGCTGTATTGGCAGTTGATGACAGCACGGTCATGGAGGGTCTTGCTGCGGGAACCTCGCACCTATGAGGACCATACACAACTGCCAGCGCTTTGGTATTTCCCTGTTCTATGTACGCAGACCCGTCAGCTTGGGCAAATACACCCATACGAGCTTGTACTTTCCGCAGTTCAGCAGCTTTTCTTCCATCAAGACGATATCCTTGATCCGACAATAACTCCAGGCCTGCCATATTTCAACGTTTGAACGAACTggcgattaaaaaaaaa
>TU2411967
ctccATCTGCTCCCTTACCTCCCCTGCCTTTCACGCAGACCAATCTACCCCAAAGTCCAAGCTACATCACTCTCCAGTCAGCGCAGACACCTCCTGTAGATGCTGCCTCACCACCTCGTCCAACACTTTGCTGACGCCCTTACAGGCCGTCATTGCAGCCTCCATCAGTGTCTCTAGGTGGTCCTGGTGGAGTCGGGCGTCCATCTGTAGCAGGGCAATGTGCCCGCCACGAGGCAACAATGCCAGGGCCAGTGATGTGCCCCCTCCACTCTCTTCAGCATGGCACAGGTCTGCCAATGGGGTCTCATCCACAAAGCCTGCAGTGCAGGCGCACACATAGTCACGCATGGGGATGCCCGCATCGACTACTGCCAGAGTAGCGGCGTTCACACACGCGCTGTAGTTTCCTCCATCTGACTGCAAGAtCTTGACATAAATGTCTATTTGAGAGCGTGGGTACAGATTAGTCAACACTGCTGCCTCGAAAGTCTGCTTGAGGTGAAGGCTCATCTCTGTGGACTTGCGGTCCCCGTGGGGTCTTCTCTTCCTTTCAGCTGTACTGAAGGTAGCCATGCTGTATTGGCAGTTGATGACAGCACGGTCATGGAGGGTCTTGCTGCGGGAACCTCGCACTTCATGAGGACCATACACAACTGCCAGCGCTTTGGTATTTCCCTGTTCTATGTACGCAGACCCGTCAGCTTGGGCAAATACACCCATACGAGCTTGTACTTTCCGCAGTTCAGCAGCTTTTCTTCCATCAAGACGATATCCTTGATCCGACAATAACTCCAGGCCTGCCATATTTCAACGTTTGAACGAACTggcgattaaaaaaaaa

Function

NR:

description
exosome complex component RRP41

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2411966 False 840 lncRNA 0.54 3 14943706 14945260
TU2411967 True 841 lncRNA 0.54 3 14943706 14945260

Neighbor

gene id symbol gene type direction distance location
LOC110508613 NA coding downstream 181084 14761477 ~ 14762622 (-)
LOC110508612 LOC106599764 coding downstream 291115 14629535 ~ 14652591 (-)
LOC110508608 LOC106599765 coding downstream 317805 14615917 ~ 14625901 (-)
LOC110508166 NA coding downstream 422736 14516805 ~ 14520970 (-)
dtna LOC100195747 coding downstream 651157 14259507 ~ 14292549 (-)
LOC110508618 LOC106599747 coding upstream 6453 14951713 ~ 14971756 (-)
LOC110508622 LOC106599742 coding upstream 368443 15313703 ~ 15315936 (-)
LOC110508623 LOC106599911 coding upstream 387007 15332267 ~ 15335367 (-)
LOC110508624 LOC106599739 coding upstream 394025 15339285 ~ 15341799 (-)
irf-10 LOC106569155 coding upstream 540813 15486073 ~ 15502959 (-)
G2108921 NA non-coding downstream 545 14942905 ~ 14943161 (-)
G2108918 NA non-coding downstream 16398 14927076 ~ 14927308 (-)
G2108696 NA non-coding downstream 91150 14852312 ~ 14852556 (-)
G2108694 NA non-coding downstream 92837 14850633 ~ 14850869 (-)
G2108693 NA non-coding downstream 93500 14850000 ~ 14850206 (-)
G2108924 NA non-coding upstream 1677 14946937 ~ 14947147 (-)
G2108925 NA non-coding upstream 1950 14947210 ~ 14947515 (-)
G2108928 NA non-coding upstream 4578 14949838 ~ 14950186 (-)
G2108970 NA non-coding upstream 73510 15018770 ~ 15019436 (-)
G2105419 LOC104953893 other downstream 3443634 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 4049626 10886198 ~ 10894141 (-)
G2103920 NA other downstream 4235207 10708012 ~ 10708499 (-)
G2103257 NA other downstream 4737030 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 4828309 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 594508 15539768 ~ 15554897 (-)
G2109705 NA other upstream 658425 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 758076 15703333 ~ 15793545 (-)
G2110939 NA other upstream 1854130 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 2310948 17254319 ~ 17260420 (-)

Expression


Co-expression Network