G2109663 (LOC106599735)


Basic Information

Item Value
gene id G2109663
gene name LOC106599735
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 15539768 ~ 15554897 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2412752
taaccaaaaaacaaaaatagttcaaaaaaatatatttttgaaaatgtaatcaaaataaaaaacaggaaaTACCTTAAtaccttaagtattcagaccctttgctatgatactcgaaattgagctcgggtgcatcctgtttccaattatcatccttgagatgtttctgcaacttgattggagtccacctgtggtaaaatcaattggaaaggcacatacctgtctatataaggtcccaccgttgacggttcatgtcagagcaaaaaccaagccatgaggtcaaaggaattgtccgtacagcgagacaagattgtgtcgaggcacagatctggggaaggctaccaaaatatgtctgcagcattgaaggtccccaagaacacagtggcctctatcattcttaaattaaagaagtttggaaccaccaagactcttcctagagctggccgcccggccaaattgagAAATCGTGgaagaagggtcttggtcagggaggtgaacaagaacccaattgtggagatgggagaacctaccagaaggacaaccatccagcattccaccaatcaggcatttatggtaaggtggccagacggaagccactcctcaattaAAAagcacacgacagcccgcttggaatttgccaaaaggcacctaaaggtcttagaccatgagaaacaagattctctagtctgatgtaaccaatattgaactatttggcctgaatgccaagtgtcacgtctggaggaaacttggcaccatccttactgtgaagtatggtggtggcagcatcatgctgtggggatgtttttcagtggcagggactgggagactagtaagcGTCGtgtgaaagatgaacggagcaaaagagatccttgatgaaaacctgctccagagcgctcaggacctcagactggggcgaaggttcaccttccaacaggacaacgaccctaagcacaaagccaagacaatggcttcgggacaagtctctgaatgtccttgagtggccgagccagagcccggacttgaacccgatcaaacatctctggagagacctgaaaatagctgtgcagggacgctacccatccaacctgacagagcttgagaggatctgcagagaagaatgggagaaattccccaaatagaggtgtgccaagcttgtagtgtcatacccgacaagactcaaggctataatcgctggtgaaggtgattcaacaaaatactcagtaaagggtctgaatactaatgtaaatgtttttctttttttgaatttttacccctttttctccccaatttcatggtatccaatttttgtagtagctactatcttgtctcatcgctacaactcccgtacgggctcgaggttgaaagtcatgcgtcctccgatacacaatccAACCAGCCGCATTGCTTCttacatatttgtaccttgtcagctcgggggtttgaacttgcaaccttccggttactagtccaacgctctaaccactaggctacgtaacaaaatgttgacaaagtcaaggggtctgaatactttccgaatgcactgtatgtctatggttgcggCTGTTGCAAATGTGAAAATACAATCAAAAGTTTGCAAAGCGAATGGTTTGCTATCCGAGGTTgctatcattttttattttacctttatttatctgggcaagtcagttaagaacaaattcttatttcaaatgacggcctaggaacagtgacggcctaggaaccttgtcagctcaggggtttgaacttgcaaccttccggttactagtccaacgctctaacccgccctattACAACTGTATGTGTAAtatgaagattttttttttttttttacacacaaaaacacataatACAAACATTTAAATCAGTCGGCTTCCTCAAATGGAGGGGATGATGACAAGCTTTGCATGGAGGGTATCTGATTGAATTATTCCTCAACTTTTGGCTCAGAAACTTCATTCAGGATAAAAATGTGTTGCCGATTATCCCGAGGATTTGACCAAGGTTGCCTCGCCAACTCCTCAAACCTGATTTGTAGTATAGGGCTCTGATGTGGcacaacagttgaactaaactcatgaggcatttataagttcaTTCTTCAATAATCAAATGGGTATATATTGTTAACTTAAGCCCCAAAATGGATAAAGCAACTGCAGatttcccaaagattggaatggTGTATTTGGGCTGCTACACTCATATCCATATCATATGGCAAGAAATTACAGCCAGACTACCGTACAGTAAGTAAGTAGTTCAAAGTCAATACTAACAACTCAACTGACAATCATTACACGTTAGACTGGTTGGTAGGAATGTAAGGGTGAGGGTGGGGGGCTGGAGTCAATAGTAACCCCTCTGGTATAGGGGTAGGCGCAATTGAATACAGTTGATACAGGCTACCGTACCTACAGAGAACTGTTGGTCCCGCTGGAGTGCAGAAGCCTCTTCAACAGGTCGACTTTAACACAGTTCTCCAGGGCTCTGCAGAGCCGGCCCACGGTGCAGCCCACACAGCCCTCCTTCATCCTCCAGCGCTCCAGCATCTGGTGCACCTTTTCAGGCAGCCCGTCACGTTGGTAGTCATGGTCGAtggtctccacctccacctcgcTCAGGCCCAGACGACGGGCGCAGCGCTTCCAGTCCTTCCCGATATTATCTCTCAGGAGATCCAGGTGCTCCTCCGTCACTGCC

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2412752 True 2697 TUCP 0.45 3 15539768 15554897

Neighbor

gene id symbol gene type direction distance location
irf-10 LOC106569155 coding downstream 36809 15486073 ~ 15502959 (-)
LOC110508624 LOC106599739 coding downstream 197969 15339285 ~ 15341799 (-)
LOC110508623 LOC106599911 coding downstream 204401 15332267 ~ 15335367 (-)
LOC110508622 LOC106599742 coding downstream 223832 15313703 ~ 15315936 (-)
LOC110508618 LOC106599747 coding downstream 568012 14951713 ~ 14971756 (-)
LOC110508626 LOC106599727 coding upstream 66767 15621664 ~ 15700456 (-)
LOC110508627 LOC106599725 coding upstream 148436 15703333 ~ 15793545 (-)
LOC110508632 igfbp-3b2 coding upstream 353545 15908442 ~ 15920850 (-)
LOC110508633 LOC106599720 coding upstream 379288 15934185 ~ 16017950 (-)
LOC110508634 LOC106569165 coding upstream 474221 16029118 ~ 16054346 (-)
G2109634 NA non-coding downstream 30658 15508840 ~ 15509110 (-)
G2109228 NA non-coding downstream 218888 15320678 ~ 15320880 (-)
G2109212 NA non-coding downstream 232288 15307257 ~ 15307480 (-)
G2109193 NA non-coding downstream 242205 15297246 ~ 15297563 (-)
G2109163 NA non-coding downstream 266082 15273327 ~ 15273686 (-)
G2109672 NA non-coding upstream 6223 15561120 ~ 15561394 (-)
G2109675 NA non-coding upstream 9545 15564442 ~ 15564642 (-)
G2109684 NA non-coding upstream 21728 15576625 ~ 15576840 (-)
G2109700 NA non-coding upstream 41832 15596729 ~ 15596940 (-)
G2109704 NA non-coding upstream 46449 15601346 ~ 15601578 (-)
G2105419 LOC104953893 other downstream 4039696 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 4645688 10886198 ~ 10894141 (-)
G2103920 NA other downstream 4831269 10708012 ~ 10708499 (-)
G2103257 NA other downstream 5333092 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 5424371 10113428 ~ 10115397 (-)
G2109705 NA other upstream 48788 15603685 ~ 15604463 (-)
G2110939 NA other upstream 1244493 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 1701311 17254319 ~ 17260420 (-)
G2112905 NA other upstream 2906277 18461174 ~ 18461538 (-)

Expression


Co-expression Network