G2111499


Basic Information

Item Value
gene id G2111499
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 16894939 ~ 16925687 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2414694
TGCAGTTTTTCCAGTGACATACTGTACCATTTAACATCACAGTGACACTTACAGTAACAACCCCATCATATTGGCTACAGGGTGCTGAATGAAAAACAAAACATTAATTACAAGATATGTACTACAGTATACCAAGGTTAGTATCTTTGAGGCTGACTGGAAATCAATGATATACTTCTCTTCTCTGTAACATGTGAATGGTGTCCATGTAGTAATAGTGTATCAAGCCCAAGGTTTAATAGAATAACACAACTAGTCTGTACAAGCGTAAGATGCTGCATGACATTAATGGAAATGTATCTCAAAGCCTCACAACACACTCCCTCTGAGTGTTTCATGTGATATTGTACCTAACTCACATTCGGTTGGTGGTAACGTACAACATGACAATTTGAATTACACGTTTATTCTGGGGGGGAAATGGCTtacgtcattgtaaagaagactCCATCAGACTGAAATAATCTTATGTGGGACTGATTATACTGAATGTACGAGTGAGTCTGATTGGACAGTCTGTGGTCAAAGCACTCCCCCAGACCCATAATGGGAATATTCAGTATGGACATAATGTTCATAAAGTTGCAAATAAAAAATGTTATGTATCGAGCAGACACTATTCTCCATCACATGGAACAGAGATCTGTGTCGGATGTACATTAAGACATATGTTTGGAATTTCGCCCAACTGAATAAAGCTCTTAACCAGCTGTCCAATAACAGAGCACACTGAAGCGTCAAGGCCATATTCTGACAACAGATACTGTAGATGCTACTGACTTTAACCTTTAGGAGTAGCAGGGGGCATTGGAAGCATTCAGGTGCcctattcataaagcgtctcagagtaggagtgctgatcttggGTCCATGTAGTCCTTCACACTGTGATCGCCAAGTAAAAACTGATCGCAAATCAGCTATCCTAAACAGACACTTTACGAGTTTGGGCTCAGCGCGGttttacatacatacagtgcattcggaaagtatttacacaccttcactttttccatattttgtaacgttacaaccttatgctaaaatggatttaataaaataaaaactcaatctacacacaataccccataattaaaaagagaaaacaggtttttaataaACATTtgcaaattgttttttttttttttttacagaaataccctatttacataactactcagaccctttgctactgGACTCgagattgagctcaggtgcatcctgtttccattgatcatcattgagatgtttctgcaacttgattggagtccacctgtggtaaattcaattgattggacatgatttggaaaggcacacacatgtctaagtaaggtcctacagttgacagtgcatgttagagcaaaaaccaagccataaggtagaagcaattgtccgtagagctgagacatttctgcatcattgaaggtccccaagaacacagtggcctccattcttaaatggaagtttggaaccaccaagactcttcatagagctgagcaatcgggagagaaggaccttggtcagggaggtgcctaagaacccaatggtcattctgacagagctccagagttcctctgtggagatgggagaatgttccaggaggacaaccatctctgtagctcaccaccaagcaggcctttatggtagtggtcagaaggaagccactcctcagtaaaaggcacagcagcccgcttggaatttgccaaaaggcacctaaaggatttaagattctctggtctgatgaaaccaagattgaactcattggcctgaatgccaagcgtcacatctggaggaaacctggcagcatcatgtcgggatgtttttcagcagcagggactggtagactaatcaggatcgagggaaagatgaatggagcaaagtacagagatccttgatgaaaacctgctccagagcgctcaggacctcaataCTGGgcagaaggttcaccttccaacaggacaacgaccctaagcacaagaCAGGAGTGGATTCTGGACAGGTCTCAAAGTcattgagtggctcagccagagcctggagttgaacccgatcaaacatctctggagacctgaaaatagctgtgcagcgacactccccatccaacctgacaaagcatgagaggatctgcaaagaagaaccggataaactccccaaatacagtggggcaaaaaaCTACCCAGCcatttggcatgagtcctcaaACTGATAACCCAACAATGCTGCTAAAGTAACCCCTGCTACTCCTAACATGGCCCATGACTATAGCCTCCTTCAATTACTGTCCCTACAAATCAAATCAGACTTTATTTGcgacatgcgccgaata

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2414694 True 2323 lncRNA 0.43 2 16894939 16925687

Neighbor

gene id symbol gene type direction distance location
LOC110508642 NA coding downstream 66662 16819286 ~ 16828277 (-)
LOC110508637 LOC106599711 coding downstream 743182 16143163 ~ 16151757 (-)
LOC110508634 LOC106569165 coding downstream 840593 16029118 ~ 16054346 (-)
LOC110508633 LOC106599720 coding downstream 876989 15934185 ~ 16017950 (-)
LOC110508632 igfbp-3b2 coding downstream 974089 15908442 ~ 15920850 (-)
LOC110508646 LOC106599672 coding upstream 328632 17254319 ~ 17260420 (-)
LOC110508647 LOC106599671 coding upstream 337536 17263223 ~ 17285064 (-)
LOC110508648 LOC106599664 coding upstream 361269 17286956 ~ 17401108 (-)
LOC100653470 LOC106599250 coding upstream 640065 17565752 ~ 17622150 (-)
LOC110508653 LOC106599252 coding upstream 703310 17628997 ~ 17767340 (-)
G2111501 NA non-coding downstream 54716 16840013 ~ 16840223 (-)
G2110980 NA non-coding downstream 58086 16835836 ~ 16836853 (-)
G2110948 NA non-coding downstream 83582 16811139 ~ 16811357 (-)
G2110941 NA non-coding downstream 93466 16801271 ~ 16801473 (-)
G2111565 NA non-coding upstream 13342 16939029 ~ 16939257 (-)
G2111573 NA non-coding upstream 32660 16958347 ~ 16963196 (-)
G2111655 NA non-coding upstream 227458 17153145 ~ 17154914 (-)
G2111700 NA non-coding upstream 253651 17179338 ~ 17179540 (-)
G2111742 NA non-coding upstream 307883 17233570 ~ 17253437 (-)
G2110939 NA other downstream 95070 16799390 ~ 16799869 (-)
LOC110508627 LOC106599725 other downstream 1184010 15703333 ~ 15793545 (-)
G2109705 NA other downstream 1290476 15603685 ~ 15604463 (-)
G2109663 LOC106599735 other downstream 1340042 15539768 ~ 15554897 (-)
G2105419 LOC104953893 other downstream 5394867 11499126 ~ 11500072 (-)
G2112905 NA other upstream 1535487 18461174 ~ 18461538 (-)
G2112922 NA other upstream 1573854 18499541 ~ 18499966 (-)
G2113211 NA other upstream 1731866 18657553 ~ 18659728 (-)
G2113287 NA other upstream 1816231 18741918 ~ 18742284 (-)

Expression


Co-expression Network