XLOC_004007 (si:dkey-27d5.3)


Basic Information

Item Value
gene id XLOC_004007
gene name si:dkey-27d5.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12510223 ~ 12512122 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007646
CAACGgttctttttgtgttgttttgaacttgCTCTGTCATTGGCATCTGATCTCGGCGTCCTTCCTGGCAACTGATTCCCagattattgatattattgattGTTGGATACATCGATTGATCGCCTGCTGCTCCCTTCATTCAGGTTTGACCCTTGTTATCACactgtgttttgtgtttagtATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGGCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTAAAGTCATCAAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgaGAATCTGGCTGAAGCAAAGGCATCAGAGGAGGACAAGCTAAAAGCGGTGATGTACCAGTCCAGTCTGTGCTACTACTCCAGCAGggcagcagctctgctTCGCAAAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGATGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCTTCCTTCTGCCAGACCAAGCCGCtgtcctcctcttcctcagctgGTACAGCATCTTCAGTCCAGGACGTCAGAGGGAAACGTTCCCGCTCCCCATCTTCACCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGAGACCTGGAGCCAACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA
>TCONS_00007647
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGGCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTAAAGTCATCAAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgaGAATCTGGCTGAAGCAAAGGCATCAGAGGAGGACAAGCTAAAAGCGGTGATGTACCAGTCCAGTCTGTGCTACTACTCCAGCAGggcagcagctctgctTCGCAAAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

symbol description
si:dkey-27d5.3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000111245

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007646 False 1016 mRNA 0.49 6 12510223 12512122
TCONS_00007647 True 525 mRNA 0.51 5 12510628 12511941

Neighbor

gene id symbol gene type direction distance location
XLOC_004005 si:dkey-27d5.4 coding downstream 11107 12497180 ~ 12499116 (-)
XLOC_003997 NA coding downstream 18944 12429383 ~ 12491279 (-)
XLOC_004004 si:dkey-27d5.5 coding downstream 26921 12481385 ~ 12483302 (-)
XLOC_004003 si:dkey-27d5.6 coding downstream 38217 12470089 ~ 12472006 (-)
XLOC_003998 NA coding downstream 44814 12430155 ~ 12465409 (-)
XLOC_004009 zgc:174354 coding upstream 16259 12528381 ~ 12530304 (-)
XLOC_004010 zgc:174354 coding upstream 35069 12547191 ~ 12549110 (-)
XLOC_004011 CABZ01022569.2 coding upstream 60184 12572306 ~ 12573680 (-)
XLOC_004012 zgc:91850 coding upstream 76512 12588634 ~ 12589948 (-)
XLOC_004014 CR450764.17 coding upstream 98454 12610576 ~ 12619789 (-)
XLOC_004006 BX000700.27 misc downstream 9961 12499966 ~ 12500262 (-)
XLOC_004000 BX000700.23 misc downstream 71843 12438084 ~ 12438380 (-)
XLOC_003995 BX000700.6 misc downstream 114409 12395518 ~ 12395814 (-)
XLOC_003991 BX000700.22 misc downstream 158668 12351259 ~ 12351555 (-)
XLOC_003988 LO017719.2 misc downstream 186297 12323630 ~ 12323926 (-)
XLOC_004008 BX000700.19 misc upstream 844 12512966 ~ 12513262 (-)
XLOC_004013 CABZ01022569.1 misc upstream 78877 12590999 ~ 12591296 (-)
XLOC_004015 CR450764.4 misc upstream 109396 12621518 ~ 12621767 (-)
XLOC_004019 CR450764.8 misc upstream 179273 12691395 ~ 12691691 (-)
XLOC_004063 CR854846.1 misc upstream 3615260 16127382 ~ 16127678 (-)
XLOC_004002 NA non-coding downstream 45737 12463700 ~ 12464486 (-)
XLOC_003977 NA non-coding downstream 296792 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 324079 12185854 ~ 12186144 (-)
XLOC_004024 CR450764.5 non-coding upstream 244021 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 970549 13482671 ~ 13482787 (-)
XLOC_004032 CR555295.1 non-coding upstream 1286331 13798453 ~ 13800802 (-)
XLOC_004034 NA non-coding upstream 1635541 14147663 ~ 14148426 (-)
XLOC_004035 NA non-coding upstream 1796775 14308897 ~ 14311237 (-)

Expression


Co-expression Network